Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007746

Physical Location & Seq

Genomic Coordinates Reverse (-)

6851180 .. 6857363

Gene Structure 6184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1080400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGTCGTCGGTCGAGTATTTACGTCCAACAATCCACAATAGGTTTTGCTTGAATTTGAATTTTAATGCGTATCACTCCCGCCATGGATTGGGATTCCTCCGCAGTCAATCGAGGGATTTCAACCAGGAAGCGAGACAGTGCGTTTCGAACACGGCGGTGTTCCCTCTGGTCACGTTGTACGGACAGGGCGGCAGAGCTATGACAGTTTCGGACAGGTTCGGCGGCCTCTGGAGGAGCCATGGGGGGTTTCGGACGGTTAGGGCCTCGGCGAGCGGTCAGGACACCGATTCCGGGGAGAAGAGCGACGCGAATACGACGGAGAGCCAGGCGGTGAACAATAACCCGCCGAATTCGAACTCGCCGGCTTCTAATCGGCGGCGAGATAGTCATAAGAAAGAGAAATGGTGGTGGTCGAAAGGAGGGAAGTGGCGGTGGCAGCCGATAGTTCAGGCACAAGAAATTGGAATCTTGCTGTTACAATTGGGTATTGTTATTTTCGTTATGCGGTTGCTCCGGCCCGGAATTCCGTTACCCGGGTCGGAGCCAAGGACACCGACTACGTTCGTTAGCGTTCCGTACAGTGATTTTTTGAGCAAGATTAATAGTAACCAGGTGCAGAAGGTTGAGGTTGATGGGGTTCATGTCATGTTTAAGTTGAAGTCTGCTCAGGGTGAGCAAGAAAGTGAAGTGAGCGGTGGTGGGGTGAGCAAGTTTCAGGAATCTGAGGCTTTGGTAAGAAGCGTGGCTCCGACGAAGAGGGTGGTTTACACGACGACAAGGCCAACTGATATCAAGACGCCGTATGAGAAGATGCTTGAGAATGAGGTGGAGTTTGGGTCGCCGGATAAGCGGTCTGGCGGATTCTTGAACTCTGCAATGATATCTTTGTTTTATGTTGCTGTGCTTGCTGGGCTTCTCCACAGGTTCCCTGTAAACTTTACTCAGCAAACAGCCGGTCAGATTAGGAACAGGAAATCTGGGGGCTCTGCTGGTGCTAAAGCATCTGAACAAGGAGAAGCAATAACCTTTGCTGATGTTGCTGGCGTGGATGAGGCTAAAGAGGAGTTGGAAGAAATCGTGGAATTTCTTCGGAATCCAGACAAATATATACGCCTTGGTGCTCGTCCTCCACGTGGAGTTCTCCTGGTGGGTCTTCCTGGGACAGGTAAGACTCTTCTTGCCAAGGCTGTGGCTGGGGAAGCTGATGTGCCCTTTATAAGTTGCTCTGCTAGTGAGTTTGTAGAGTTGTATGTTGGCATGGGTGCCTCTCGTGTAAGGGATCTATTTGCACGGGCAAAAAAGGAGTCACCATCTATAATATTTATTGATGAGATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGTATTGTCAGCAATGATGAGCGAGAACAAACCTTGAATCAGTTGCTCACTATGGATGGATTTGACAGCAGCTCTGCAGTTATTGTTCTTGGAGCAACTAATCGCGCAGATGTCTTAGACCCAGCACTTCGTCGACCAGGGAGATTTGATCGTGTGGTTATGGTGGAAACACCAGATAGGAGAGGAAGAGAAGAGATTCTAAAGGTGCATGCTACCCAAAAAGAGCTTCCTTTGGCAAAAGATGTCTACCTTGGTGACATTGCTTCTATGACTACTGGCTTTACTGGGGCAGATCTTGCAAATTTGGTGAATGAAGCTGCTTTATTGGCTGGAAGACAAAGCAAGTTGGTTGTGGAAAAAATTGATTTTATTCAAGCTGTGGAGAGATCAATAGCTGGTATAGAAAAGAAGACTGCCAAGTTGCAGGGAATTGAGAAGGCTGTTGTTGCACGACATGAAGCTGGTCATGCAGTAGTAGGGACTGCTGTTGCAAGTCTTCTTCCTGGACAGCCACGTGTTGAGAAATTGAGCATATTGCCAAGGTCGGGAGGGGCGTTGGGCTTTACTTATATTCCTCCAACAACTGAAGACAGATATTTACTCTTCATCGATGAGTTGCGTGGACGTTTGGTTACACTTCTTGGAGGACGTGCAGCAGAAGAATTTGTGTATTCAGGTCGTGTCTCAACAGGTGCACTTGATGATATACGACGAGCGACTGACATGGCATACAAAGCAGTAGCTGAGTATGGTCTCAATCAGAACATTGGCCCTGTGTCTATAGCAACACTTTCTGCTGGTGGAATGGATGAGTCTGGAGGAGGTGCTCCTTGGGGAAGGGATCAGGGGCGTCTTGTTGATCTTGTTCAAGGAGAGGTTAAAGCTTTGCTACAATCTGCCTTGGACATAGCTCTTTCGGTTGTACGTGCTAATCCTACTGTTTTGGAGGGTCTTGGTGCTCAGTTGGAAGAAAGAGAGAAGGTAGAAGGCGAAGAGCTACAGAAGTGGTTAAAATTGGTGGTTGCACCAACGGAACTGTCAATCTTCATTAGTGGCAAGCCAGAGTCTCTTCCCCCGTTGCAGACCATCGAGTCTCTTCTCCCATTGCAGACCGGCTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

831

Amino Acids

90.32

Weight (kDa)

8.14

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsH_ext	PF06480	161 - 254	6.3e-06	FtsH Extracellular
AAA	PF00004	380 - 512	2.3e-40	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	537 - 579	2.2e-10	AAA+ lid domain
Peptidase_M41	PF01434	600 - 791	1.8e-34	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47060 AT5G58870
fragaria_vesca	FvH4_3g38190 FvH4_3g38190 FvH4_3g38190
malus_domestica	MD03G1074100.v1.1 MD11G1080400.v1.1
prunus_persica	Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1
pyrus_communis	pycom03g05990 pycom11g06770
rosa_chinensis	RchiOBHm_Chr5g0068621
rosa_laevigata	RLG00000035985
rosa_multiflora	Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012250
rosa_rugosa	Rorug05G0392000
rosa_samantha	Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200
rosa_wichuraiana	Rw5G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1217
AasI	GACNNNNNNGTC	1 cut(s)	2458
AccB1I	GGYRCC	1 cut(s)	1262
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	2 cut(s)	273, 693
AccI	GTMKAC	2 cut(s)	1501, 1614
AccII	CGCG	2 cut(s)	308, 1473
AclWI	GGATC	2 cut(s)	1287, 2217
AcsI	RAATTY	8 cut(s)	52, 58, 349, 522, 1082, 1364, 1669, 2030
AcuI	CTGAAG	1 cut(s)	1974
AcvI	CACGTG	2 cut(s)	1133, 1883
AcyI	GRCGYC	2 cut(s)	797, 2218
AfaI	GTAC	3 cut(s)	179, 578, 2292
AfiI	CCNNNNNNNGG	6 cut(s)	88, 291, 533, 1133, 1163, 1913
AflIII	ACRYGT	1 cut(s)	1882
AgsI	TTSAA	8 cut(s)	52, 58, 121, 658, 868, 1405, 1742, 2237
AjiI	CACGTC	1 cut(s)	2018
AjnI	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1504, 1870
AjuI	GAANNNNNNNTTGG	2 cut(s)	1578, 1610
AleI	CACNNNNGTG	1 cut(s)	155
Alw21I	GWGCWC	4 cut(s)	1123, 2065, 2197, 2329
Alw26I	GTCTC	5 cut(s)	127, 2056, 2126, 2439, 2466
Alw44I	GTGCAC	1 cut(s)	2061
AlwI	GGATC	2 cut(s)	1287, 2217
AlwNI	CAGNNNCTG	1 cut(s)	2111
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	5 cut(s)	223, 261, 515, 779, 2137
ApaLI	GTGCAC	1 cut(s)	2061
ApeKI	GCWGC	4 cut(s)	436, 1437, 1685, 2021
ApoI	RAATTY	8 cut(s)	52, 58, 349, 522, 1082, 1364, 1669, 2030
ArsI	GACNNNNNNTTYG	4 cut(s)	940, 972, 1289, 1321
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	2 cut(s)	1086, 1563
AspLEI	GCGC	1 cut(s)	1475
AspS9I	GGNCC	3 cut(s)	261, 516, 2138
AsuC2I	CCSGG	4 cut(s)	292, 519, 534, 535
AsuHPI	GGTGA	6 cut(s)	343, 683, 715, 1299, 1634, 1687
AsuII	TTCGAA	2 cut(s)	146, 353
AvaI	CYCGRG	1 cut(s)	533
BaeGI	GKGCMC	2 cut(s)	1212, 2065
BanI	GGYRCC	1 cut(s)	1262
BanII	GRGCYC	1 cut(s)	986
BauI	CACGAG	1 cut(s)	1269
BbrPI	CACGTG	2 cut(s)	1133, 1883
BbsI	GAAGAC	5 cut(s)	1145, 1708, 1784, 1856, 1962
Bbv12I	GWGCWC	4 cut(s)	1123, 2065, 2197, 2329
BbvI	GCAGC	4 cut(s)	448, 1449, 1672, 2033
BccI	CCATC	5 cut(s)	626, 1318, 1352, 1418, 2462
BceAI	ACGGC	3 cut(s)	168, 784, 1338
BciT130I	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1506, 1872
BcnI	CCSGG	4 cut(s)	292, 519, 534, 535
BcoDI	GTCTC	5 cut(s)	127, 2056, 2126, 2439, 2466
BfaI	CTAG	1 cut(s)	1230
BfmI	CTRYAG	3 cut(s)	1443, 2148, 2366
BglII	AGATCT	1 cut(s)	1660
BisI	GCNGC	7 cut(s)	190, 223, 377, 437, 1438, 1686, 2022
BlsI	GCNGC	7 cut(s)	191, 224, 378, 438, 1439, 1687, 2023
BmeT110I	CYCGRG	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	2018
BmgT120I	GGNCC	3 cut(s)	261, 516, 2138
BmiI	GGNNCC	5 cut(s)	236, 543, 747, 926, 1264
BmrI	ACTGGG	1 cut(s)	1662
BmsI	GCATC	3 cut(s)	801, 1010, 1327
BmuI	ACTGGG	1 cut(s)	1662
BpiI	GAAGAC	5 cut(s)	1145, 1708, 1784, 1856, 1962
BpmI	CTGGAG	2 cut(s)	250, 2205
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	2 cut(s)	146, 353
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	4 cut(s)	292, 519, 534, 535
Bsa29I	ATCGAT	1 cut(s)	1977
BsaAI	YACGTR	3 cut(s)	1133, 1883, 2294
BsaHI	GRCGYC	2 cut(s)	797, 2218
BsaI	GGTCTC	1 cut(s)	2126
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	6 cut(s)	88, 291, 533, 1133, 1163, 1913
Bse118I	RCCGGY	3 cut(s)	361, 953, 2480
Bse1I	ACTGG	2 cut(s)	1648, 1657
Bse3DI	GCAATG	4 cut(s)	882, 1387, 1626, 2471
BseBI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1506, 1872
BseCI	ATCGAT	1 cut(s)	1977
BseGI	GGATG	3 cut(s)	1054, 1429, 2182
BseLI	CCNNNNNNNGG	6 cut(s)	88, 291, 533, 1133, 1163, 1913
BseMI	GCAATG	4 cut(s)	882, 1387, 1626, 2471
BseMII	CTCAG	5 cut(s)	680, 714, 956, 2103, 2342
BseNI	ACTGG	2 cut(s)	1648, 1657
BseRI	GAGGAG	3 cut(s)	247, 1076, 2202
BseSI	GKGCMC	2 cut(s)	1212, 2065
BseXI	GCAGC	4 cut(s)	448, 1449, 1672, 2033
BseYI	CCCAGC	3 cut(s)	908, 1193, 1489
BsgI	GTGCAG	2 cut(s)	635, 2040
Bsh1236I	CGCG	2 cut(s)	308, 1473
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	5 cut(s)	225, 263, 517, 781, 2139
BshNI	GGYRCC	1 cut(s)	1262
BshVI	ATCGAT	1 cut(s)	1977
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	4 cut(s)	1123, 2065, 2197, 2329
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	8 cut(s)	291, 362, 514, 519, 534, 842, 954, 2481
BslFI	GGGAC	2 cut(s)	1174, 1861
BslI	CCNNNNNNNGG	6 cut(s)	88, 291, 533, 1133, 1163, 1913
BsmAI	GTCTC	5 cut(s)	127, 2056, 2126, 2439, 2466
BsmFI	GGGAC	2 cut(s)	1174, 1861
BsnI	GGCC	5 cut(s)	225, 263, 517, 781, 2139
Bso31I	GGTCTC	1 cut(s)	2126
BsoBI	CYCGRG	1 cut(s)	533
Bsp119I	TTCGAA	2 cut(s)	146, 353
Bsp1286I	GDGCHC	6 cut(s)	986, 1123, 1212, 2065, 2197, 2329
Bsp143I	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
Bsp19I	CCATGG	2 cut(s)	82, 238
BspANI	GGCC	5 cut(s)	225, 263, 517, 781, 2139
BspCNI	CTCAG	5 cut(s)	679, 715, 955, 2104, 2341
BspDI	ATCGAT	1 cut(s)	1977
BspFNI	CGCG	2 cut(s)	308, 1473
BspLI	GGNNCC	5 cut(s)	236, 543, 747, 926, 1264
BspMAI	CTGCAG	1 cut(s)	1447
BspPI	GGATC	2 cut(s)	1287, 2217
BspQI	GCTCTTC	2 cut(s)	293, 2355
BspT104I	TTCGAA	2 cut(s)	146, 353
BspT107I	GGYRCC	1 cut(s)	1262
BspTNI	GGTCTC	1 cut(s)	2126
BsrBI	CCGCTC	2 cut(s)	273, 693
BsrDI	GCAATG	4 cut(s)	882, 1387, 1626, 2471
BsrFI	RCCGGY	3 cut(s)	361, 953, 2480
BsrI	ACTGG	2 cut(s)	1648, 1657
BssAI	RCCGGY	3 cut(s)	361, 953, 2480
BssMI	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
BssNI	GRCGYC	2 cut(s)	797, 2218
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	9 cut(s)	82, 238, 545, 1114, 1182, 1618, 1907, 2198, 2268
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1506, 1872
Bst4CI	ACNGT	6 cut(s)	138, 205, 256, 581, 2308, 2406
Bst6I	CTCTTC	9 cut(s)	293, 749, 1179, 1549, 1554, 1976, 2355, 2442, 2469
BstACI	GRCGYC	2 cut(s)	797, 2218
BstAPI	GCANNNNNTGC	1 cut(s)	1664
BstBAI	YACGTR	3 cut(s)	1133, 1883, 2294
BstBI	TTCGAA	2 cut(s)	146, 353
BstC8I	GCNNGC	6 cut(s)	271, 363, 906, 1042, 1578, 2426
BstDEI	CTNAG	6 cut(s)	666, 723, 942, 1483, 2112, 2328
BstDSI	CCRYGG	2 cut(s)	82, 238
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	3 cut(s)	1054, 1429, 2182
BstFNI	CGCG	2 cut(s)	308, 1473
BstHHI	GCGC	1 cut(s)	1475
BstKTI	GATC	6 cut(s)	1282, 1519, 1663, 1757, 2212, 2230
BstMAI	GTCTC	5 cut(s)	127, 2056, 2126, 2439, 2466
BstMBI	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
BstMCI	CGRYCG	1 cut(s)	12
BstNI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1506, 1872
BstNSI	RCATGY	1 cut(s)	1580
BstSFI	CTRYAG	3 cut(s)	1443, 2148, 2366
BstSLI	GKGCMC	2 cut(s)	1212, 2065
BstUI	CGCG	2 cut(s)	308, 1473
BstV1I	GCAGC	4 cut(s)	448, 1449, 1672, 2033
BstV2I	GAAGAC	5 cut(s)	1145, 1708, 1784, 1856, 1962
BstX2I	RGATCY	2 cut(s)	1279, 1660
BstXI	CCANNNNNNTGG	1 cut(s)	1189
BstYI	RGATCY	2 cut(s)	1279, 1660
Bsu15I	ATCGAT	1 cut(s)	1977
BsuRI	GGCC	5 cut(s)	225, 263, 517, 781, 2139
BsuTUI	ATCGAT	1 cut(s)	1977
BtgI	CCRYGG	2 cut(s)	82, 238
BtrI	CACGTC	1 cut(s)	2018
BtsCI	GGATG	3 cut(s)	1054, 1429, 2182
BtsIMutI	CAGTG	2 cut(s)	143, 586
Cac8I	GCNNGC	6 cut(s)	271, 363, 906, 1042, 1578, 2426
CaiI	CAGNNNCTG	1 cut(s)	2111
CfoI	GCGC	1 cut(s)	1475
Cfr10I	RCCGGY	3 cut(s)	361, 953, 2480
Cfr13I	GGNCC	3 cut(s)	261, 516, 2138
Cfr9I	CCCGGG	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	1977
CseI	GACGC	3 cut(s)	314, 805, 2207
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	3 cut(s)	178, 577, 2291
CviAII	CATG	9 cut(s)	83, 239, 641, 646, 1258, 1577, 1823, 1835, 2092
CviQI	GTAC	3 cut(s)	178, 577, 2291
DdeI	CTNAG	6 cut(s)	666, 723, 942, 1483, 2112, 2328
DpnI	GATC	6 cut(s)	1281, 1518, 1662, 1756, 2211, 2229
DpnII	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
DrdI	GACNNNNNNGTC	1 cut(s)	2458
DseDI	GACNNNNNNGTC	1 cut(s)	2458
Eam1104I	CTCTTC	9 cut(s)	293, 749, 1179, 1549, 1554, 1976, 2355, 2442, 2469
EarI	CTCTTC	9 cut(s)	293, 749, 1179, 1549, 1554, 1976, 2355, 2442, 2469
EciI	GGCGGA	1 cut(s)	873
Eco130I	CCWWGG	9 cut(s)	82, 238, 545, 1114, 1182, 1618, 1907, 2198, 2268
Eco24I	GRGCYC	1 cut(s)	986
Eco31I	GGTCTC	1 cut(s)	2126
Eco32I	GATATC	2 cut(s)	790, 882
Eco57I	CTGAAG	1 cut(s)	1974
Eco72I	CACGTG	2 cut(s)	1133, 1883
Eco88I	CYCGRG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRI	GAATTC	2 cut(s)	349, 522
EcoRII	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1504, 1870
EcoRV	GATATC	2 cut(s)	790, 882
EcoT14I	CCWWGG	9 cut(s)	82, 238, 545, 1114, 1182, 1618, 1907, 2198, 2268
EcoT38I	GRGCYC	1 cut(s)	986
ErhI	CCWWGG	9 cut(s)	82, 238, 545, 1114, 1182, 1618, 1907, 2198, 2268
FaeI	CATG	9 cut(s)	86, 242, 644, 649, 1261, 1580, 1826, 1838, 2095
FaqI	GGGAC	2 cut(s)	1174, 1861
FatI	CATG	9 cut(s)	82, 238, 640, 645, 1257, 1576, 1822, 1834, 2091
FauI	CCCGC	2 cut(s)	86, 351
FblI	GTMKAC	2 cut(s)	1501, 1614
Fnu4HI	GCNGC	7 cut(s)	190, 223, 377, 437, 1438, 1686, 2022
FokI	GGATG	3 cut(s)	1061, 1436, 2189
FriOI	GRGCYC	1 cut(s)	986
Fsp4HI	GCNGC	7 cut(s)	190, 223, 377, 437, 1438, 1686, 2022
FspBI	CTAG	1 cut(s)	1230
GlaI	GCGC	1 cut(s)	1474
GluI	GCNGC	7 cut(s)	190, 223, 377, 437, 1438, 1686, 2022
GsaI	CCCAGC	3 cut(s)	912, 1197, 1493
GsuI	CTGGAG	2 cut(s)	250, 2205
HaeIII	GGCC	5 cut(s)	225, 263, 517, 781, 2139
HapII	CCGG	8 cut(s)	291, 362, 514, 519, 534, 842, 954, 2481
HgaI	GACGC	3 cut(s)	314, 805, 2207
HhaI	GCGC	1 cut(s)	1475
Hin1I	GRCGYC	2 cut(s)	797, 2218
Hin1II	CATG	9 cut(s)	86, 242, 644, 649, 1261, 1580, 1826, 1838, 2095
Hin6I	GCGC	1 cut(s)	1473
HinP1I	GCGC	1 cut(s)	1473
HincII	GTYRAC	1 cut(s)	1502
HindII	GTYRAC	1 cut(s)	1502
HindIII	AAGCTT	1 cut(s)	2250
HpaII	CCGG	8 cut(s)	291, 362, 514, 519, 534, 842, 954, 2481
HphI	GGTGA	6 cut(s)	343, 683, 715, 1299, 1634, 1687
Hpy166II	GTNNAC	7 cut(s)	334, 766, 934, 1502, 1615, 1991, 2063
Hpy188I	TCNGA	9 cut(s)	211, 252, 541, 724, 750, 960, 1006, 1092, 2130
Hpy188III	TCNNGA	8 cut(s)	229, 278, 716, 793, 865, 1097, 1914, 2184
Hpy8I	GTNNAC	7 cut(s)	334, 766, 934, 1502, 1615, 1991, 2063
Hpy99I	CGWCG	7 cut(s)	10, 308, 319, 754, 775, 1503, 2082
HpyAV	CCTTC	5 cut(s)	613, 1798, 2199, 2341, 2348
HpyCH4III	ACNGT	6 cut(s)	138, 205, 256, 581, 2308, 2406
HpyCH4IV	ACGT	8 cut(s)	22, 173, 560, 1132, 1882, 1993, 2017, 2293
HpyF3I	CTNAG	6 cut(s)	666, 723, 942, 1483, 2112, 2328
HpySE526I	ACGT	8 cut(s)	22, 173, 560, 1132, 1882, 1993, 2017, 2293
Hsp92I	GRCGYC	2 cut(s)	797, 2218
Hsp92II	CATG	9 cut(s)	86, 242, 644, 649, 1261, 1580, 1826, 1838, 2095
HspAI	GCGC	1 cut(s)	1473
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
LguI	GCTCTTC	2 cut(s)	293, 2355
LmnI	GCTCC	6 cut(s)	234, 516, 541, 751, 1460, 2200
Lsp1109I	GCAGC	4 cut(s)	448, 1449, 1672, 2033
LweI	GCATC	3 cut(s)	801, 1010, 1327
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	1 cut(s)	1230
MaeII	ACGT	8 cut(s)	22, 173, 560, 1132, 1882, 1993, 2017, 2293
MaeIII	GTNAC	7 cut(s)	169, 474, 528, 605, 1305, 1622, 1999
MalI	GATC	6 cut(s)	1281, 1518, 1662, 1756, 2211, 2229
MbiI	CCGCTC	2 cut(s)	273, 693
MboI	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	2 cut(s)	1279, 1660
MhlI	GDGCHC	6 cut(s)	986, 1123, 1212, 2065, 2197, 2329
MlyI	GAGTC	5 cut(s)	1165, 1313, 2189, 2441, 2468
MmeI	TCCRAC	6 cut(s)	50, 519, 773, 1047, 1970, 2313
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	2 cut(s)	1086, 1563
MseI	TTAA	6 cut(s)	63, 600, 651, 2247, 2378, 2491
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	8 cut(s)	291, 362, 514, 519, 534, 842, 954, 2481
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	7 cut(s)	125, 326, 611, 1145, 1158, 1506, 1872
MvnI	CGCG	2 cut(s)	308, 1473
NaeI	GCCGGC	1 cut(s)	363
NciI	CCSGG	4 cut(s)	292, 519, 534, 535
NcoI	CCATGG	2 cut(s)	82, 238
NdeII	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	9 cut(s)	86, 242, 644, 649, 1261, 1580, 1826, 1838, 2095
NlaIV	GGNNCC	5 cut(s)	236, 543, 747, 926, 1264
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	3 cut(s)	169, 1305, 1622
NspI	RCATGY	1 cut(s)	1580
NspV	TTCGAA	2 cut(s)	146, 353
OliI	CACNNNNGTG	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	1580
PciSI	GCTCTTC	2 cut(s)	293, 2355
PcsI	WCGNNNNNNNCGW	2 cut(s)	1129, 1919
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	2 cut(s)	1086, 1563
PfeI	GAWTC	8 cut(s)	93, 287, 465, 719, 861, 1093, 1405, 1564
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	1870
PkrI	GCNGC	7 cut(s)	191, 224, 378, 438, 1439, 1687, 2023
PleI	GAGTC	5 cut(s)	1165, 1312, 2188, 2440, 2467
PmaCI	CACGTG	2 cut(s)	1133, 1883
PmlI	CACGTG	2 cut(s)	1133, 1883
PpsI	GAGTC	5 cut(s)	1165, 1312, 2188, 2440, 2467
Ppu21I	YACGTR	3 cut(s)	1133, 1883, 2294
PshBI	ATTAAT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	1217
Psp6I	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1504, 1870
PspCI	CACGTG	2 cut(s)	1133, 1883
PspFI	CCCAGC	3 cut(s)	908, 1193, 1489
PspGI	CCWGG	7 cut(s)	123, 324, 609, 1143, 1156, 1504, 1870
PspN4I	GGNNCC	5 cut(s)	236, 543, 747, 926, 1264
PspPI	GGNCC	3 cut(s)	261, 516, 2138
PstI	CTGCAG	1 cut(s)	1447
PstNI	CAGNNNCTG	1 cut(s)	2111
PsuI	RGATCY	2 cut(s)	1279, 1660
RsaI	GTAC	3 cut(s)	179, 578, 2292
RsaNI	GTAC	3 cut(s)	178, 577, 2291
RseI	CAYNNNNRTG	1 cut(s)	155
SalI	GTCGAC	1 cut(s)	1500
SapI	GCTCTTC	2 cut(s)	293, 2355
SaqAI	TTAA	6 cut(s)	63, 600, 651, 2247, 2378, 2491
SatI	GCNGC	7 cut(s)	190, 223, 377, 437, 1438, 1686, 2022
Sau3AI	GATC	6 cut(s)	1279, 1516, 1660, 1754, 2209, 2227
Sau96I	GGNCC	3 cut(s)	261, 516, 2138
SchI	GAGTC	5 cut(s)	1165, 1313, 2189, 2441, 2468
SduI	GDGCHC	6 cut(s)	986, 1123, 1212, 2065, 2197, 2329
SexAI	ACCWGGT	1 cut(s)	609
SfaNI	GCATC	3 cut(s)	801, 1010, 1327
SfcI	CTRYAG	3 cut(s)	1443, 2148, 2366
SfuI	TTCGAA	2 cut(s)	146, 353
SmaI	CCCGGG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SphI	GCATGC	1 cut(s)	1580
SspI	AATATT	1 cut(s)	1320
SspMI	CTAG	1 cut(s)	1230
StyI	CCWWGG	9 cut(s)	82, 238, 545, 1114, 1182, 1618, 1907, 2198, 2268
TaaI	ACNGT	6 cut(s)	138, 205, 256, 581, 2308, 2406
TaiI	ACGT	8 cut(s)	25, 176, 563, 1135, 1885, 1996, 2020, 2296
TaqI	TCGA	8 cut(s)	12, 110, 146, 353, 413, 1501, 1977, 2457
TauI	GCSGC	3 cut(s)	192, 225, 379
TfiI	GAWTC	8 cut(s)	93, 287, 465, 719, 861, 1093, 1405, 1564
Tru1I	TTAA	6 cut(s)	63, 600, 651, 2247, 2378, 2491
Tru9I	TTAA	6 cut(s)	63, 600, 651, 2247, 2378, 2491
TscAI	CASTG	2 cut(s)	143, 586
TseFI	GTSAC	3 cut(s)	169, 1305, 1622
TseI	GCWGC	4 cut(s)	436, 1437, 1685, 2021
Tsp45I	GTSAC	3 cut(s)	169, 1305, 1622
TspDTI	ATGAA	5 cut(s)	629, 1695, 1839, 1963, 2404
TspGWI	ACGGA	6 cut(s)	195, 332, 516, 564, 1358, 2414
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	2 cut(s)	143, 586
Van91I	CCANNNNNTGG	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	2061
VspI	ATTAAT	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	8 cut(s)	52, 58, 349, 522, 1082, 1364, 1669, 2030
XceI	RCATGY	1 cut(s)	1580
XmaI	CCCGGG	1 cut(s)	533
XmiI	GTMKAC	2 cut(s)	1501, 1614
XmnI	GAANNNNTTC	2 cut(s)	1086, 1563
XspI	CTAG	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.