Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416215.1

Orthogroup ID

OG0007746

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1352

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ccgagtccgagtccgagctcgtcgccggcggcgtcgaatccgagaagaggagagaggcagaagaagaaggagagctggtggttttcgaaaggagggaaatggaagtggcagccgattgtgcaggcccaggagattgggattctgctgttgcagttggggattgttattgtcgttatgcggttgctccggcccggaattccgttgcccgggtcggaccccaggccgccgacgacgtttattagtgtgccttatagtgactttttgagtaagattaatactaaccaggtgcagaaggtggaggttgatggggttcatgttatgtttaagctcaagtcggagccgggtggtgaggtggagagtgaaatgaatggtgccagtaagtttcaggagtcggaggctttgctaagaagtgtggctccgacgaggagggtggtttatacgaccactaggccgactgatatcaagacgccgtatgagaagatgcttgagaatgaggtggagtttggatccccggataagcgctctggcggattcatgaactctgcgatgatagctttgttttacgttgctgtgcttgcagggcttctccaccggttccctgttagcttttctcagcatactgctggtcagattaggaatagaaaacctgggggctctggtggtgccaaaacatctgaaccctcggaagcaataacctttgctgatgttgctggtgttgacgaggctaaggaggagctagaggaaattgtggaatttcttcggaatccagacaggtatatacgacttggtgctcgtcctccccgtggtgttctgctggtgagctttaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

276

Amino Acids

30.48

Weight (kDa)

9.47

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47060 AT5G58870
fragaria_vesca	FvH4_3g38190 FvH4_3g38190 FvH4_3g38190
malus_domestica	MD03G1074100.v1.1 MD11G1080400.v1.1
prunus_persica	Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1
pyrus_communis	pycom03g05990 pycom11g06770
rosa_chinensis	RchiOBHm_Chr5g0068621
rosa_laevigata	RLG00000035985
rosa_multiflora	Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012250
rosa_rugosa	Rorug05G0392000
rosa_samantha	Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200
rosa_wichuraiana	Rw5G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	371, 662
AciI	CCGC	4 cut(s)	29, 178, 224, 528
AclWI	GGATC	2 cut(s)	501, 514
AcsI	RAATTY	2 cut(s)	195, 752
AcyI	GRCGYC	2 cut(s)	32, 467
AfeI	AGCGCT	1 cut(s)	521
AfiI	CCNNNNNNNGG	3 cut(s)	47, 206, 803
AgeI	ACCGGT	1 cut(s)	591
AjnI	CCWGG	4 cut(s)	126, 218, 282, 646
AluBI	AGCT	7 cut(s)	18, 75, 328, 554, 606, 736, 822
AluI	AGCT	7 cut(s)	18, 75, 328, 554, 606, 736, 822
Alw21I	GWGCWC	2 cut(s)	20, 793
AlwI	GGATC	2 cut(s)	501, 514
Ama87I	CYCGRG	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	521
AoxI	GGCC	4 cut(s)	123, 188, 221, 449
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	195, 752
AseI	ATTAAT	1 cut(s)	273
AsiGI	ACCGGT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	3 cut(s)	124, 189, 214
AsuC2I	CCSGG	5 cut(s)	192, 207, 208, 342, 512
AsuHPI	GGTGA	2 cut(s)	359, 829
AsuII	TTCGAA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	506
BanI	GGYRCC	2 cut(s)	371, 662
BanII	GRGCYC	2 cut(s)	20, 656
Bbv12I	GWGCWC	2 cut(s)	20, 793
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	4 cut(s)	128, 220, 284, 648
BcnI	CCSGG	5 cut(s)	192, 207, 208, 342, 512
BfaI	CTAG	2 cut(s)	447, 737
BfoI	RGCGCY	1 cut(s)	523
BisI	GCNGC	3 cut(s)	30, 110, 224
BlsI	GCNGC	3 cut(s)	31, 111, 225
Bme1390I	CCNGG	9 cut(s)	128, 192, 207, 208, 220, 284, 342, 512, 648
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	124, 189, 214
BmiI	GGNNCC	7 cut(s)	216, 339, 373, 417, 508, 596, 664
BmrFI	CCNGG	9 cut(s)	128, 192, 207, 208, 220, 284, 342, 512, 648
BmsI	GCATC	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	726
Bpu14I	TTCGAA	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	314, 506
BpuMI	CCSGG	5 cut(s)	192, 207, 208, 342, 512
BsaHI	GRCGYC	2 cut(s)	32, 467
BsaJI	CCNNGG	7 cut(s)	126, 206, 218, 510, 647, 681, 802
BsaWI	WCCGGW	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 206, 803
Bse118I	RCCGGY	2 cut(s)	25, 591
Bse1I	ACTGG	1 cut(s)	375
BseBI	CCWGG	4 cut(s)	128, 220, 284, 648
BseDI	CCNNGG	7 cut(s)	126, 206, 218, 510, 647, 681, 802
BseLI	CCNNNNNNNGG	3 cut(s)	47, 206, 803
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	3 cut(s)	63, 439, 746
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	2 cut(s)	140, 308
BshFI	GGCC	4 cut(s)	125, 190, 223, 451
BshNI	GGYRCC	2 cut(s)	371, 662
BshTI	ACCGGT	1 cut(s)	591
BsiHKAI	GWGCWC	2 cut(s)	20, 793
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	7 cut(s)	26, 187, 192, 207, 341, 512, 592
BslI	CCNNNNNNNGG	3 cut(s)	47, 206, 803
BsnI	GGCC	4 cut(s)	125, 190, 223, 451
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	3 cut(s)	20, 656, 793
Bsp143I	GATC	1 cut(s)	506
BspACI	CCGC	4 cut(s)	29, 178, 224, 528
BspANI	GGCC	4 cut(s)	125, 190, 223, 451
BspCNI	CTCAG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	7 cut(s)	216, 339, 373, 417, 508, 596, 664
BspPI	GGATC	2 cut(s)	501, 514
BspT104I	TTCGAA	1 cut(s)	86
BspT107I	GGYRCC	2 cut(s)	371, 662
BsrFI	RCCGGY	2 cut(s)	25, 591
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	2 cut(s)	25, 591
BssECI	CCNNGG	7 cut(s)	126, 206, 218, 510, 647, 681, 802
BssMI	GATC	1 cut(s)	506
BssNI	GRCGYC	2 cut(s)	32, 467
Bst2UI	CCWGG	4 cut(s)	128, 220, 284, 648
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	2 cut(s)	32, 467
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	3 cut(s)	27, 123, 576
BstDEI	CTNAG	3 cut(s)	404, 612, 726
BstDSI	CCRYGG	1 cut(s)	802
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	1 cut(s)	509
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 551, 575, 580, 707
BstNI	CCWGG	4 cut(s)	128, 220, 284, 648
BstSCI	CCNGG	9 cut(s)	126, 190, 205, 206, 218, 282, 340, 510, 646
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	4 cut(s)	125, 190, 223, 451
BtgI	CCRYGG	1 cut(s)	802
BtgZI	GCGATG	1 cut(s)	560
Cac8I	GCNNGC	3 cut(s)	27, 123, 576
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	1 cut(s)	522
Cfr10I	RCCGGY	2 cut(s)	25, 591
Cfr13I	GGNCC	3 cut(s)	124, 189, 214
Cfr9I	CCCGGG	1 cut(s)	206
CseI	GACGC	2 cut(s)	21, 475
CsiI	ACCWGGT	1 cut(s)	282
CspAI	ACCGGT	1 cut(s)	591
CviAII	CATG	2 cut(s)	314, 535
DdeI	CTNAG	3 cut(s)	404, 612, 726
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	543
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	20, 656
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	214
Eco47III	AGCGCT	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	4 cut(s)	126, 218, 282, 646
EcoRV	GATATC	1 cut(s)	460
EcoT38I	GRGCYC	2 cut(s)	20, 656
FaeI	CATG	2 cut(s)	317, 538
FatI	CATG	2 cut(s)	313, 534
Fnu4HI	GCNGC	3 cut(s)	30, 110, 224
FriOI	GRGCYC	2 cut(s)	20, 656
Fsp4HI	GCNGC	3 cut(s)	30, 110, 224
FspBI	CTAG	2 cut(s)	447, 737
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	3 cut(s)	30, 110, 224
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	4 cut(s)	125, 190, 223, 451
HapII	CCGG	7 cut(s)	26, 187, 192, 207, 341, 512, 592
HgaI	GACGC	2 cut(s)	21, 475
HhaI	GCGC	1 cut(s)	522
Hin1I	GRCGYC	2 cut(s)	32, 467
Hin1II	CATG	2 cut(s)	317, 538
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	7 cut(s)	4, 10, 37, 139, 389, 531, 763
HpaII	CCGG	7 cut(s)	26, 187, 192, 207, 341, 512, 592
HphI	GGTGA	2 cut(s)	359, 829
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188III	TCNNGA	4 cut(s)	386, 463, 535, 767
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	5 cut(s)	25, 37, 232, 235, 424
HpyAV	CCTTC	2 cut(s)	61, 286
HpyCH4IV	ACGT	2 cut(s)	233, 564
HpyCH4V	TGCA	4 cut(s)	121, 151, 289, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 551, 575, 580, 707
HpyF3I	CTNAG	3 cut(s)	404, 612, 726
HpySE526I	ACGT	2 cut(s)	233, 564
Hsp92I	GRCGYC	2 cut(s)	32, 467
Hsp92II	CATG	2 cut(s)	317, 538
HspAI	GCGC	1 cut(s)	520
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	4 cut(s)	189, 337, 421, 733
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	471
MabI	ACCWGGT	1 cut(s)	282
MaeI	CTAG	2 cut(s)	447, 737
MaeII	ACGT	2 cut(s)	233, 564
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	5 cut(s)	57, 73, 76, 490, 749
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	3 cut(s)	20, 656, 793
MluCI	AATT	4 cut(s)	195, 744, 752, 826
MlyI	GAGTC	3 cut(s)	13, 19, 398
MmeI	TCCRAC	4 cut(s)	192, 315, 372, 443
MreI	CGCCGGCG	1 cut(s)	25
MroNI	GCCGGC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	3 cut(s)	273, 324, 825
MspI	CCGG	7 cut(s)	26, 187, 192, 207, 341, 512, 592
MspR9I	CCNGG	9 cut(s)	128, 192, 207, 208, 220, 284, 342, 512, 648
MvaI	CCWGG	4 cut(s)	128, 220, 284, 648
MwoI	GCNNNNNNNGC	5 cut(s)	118, 551, 575, 580, 707
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	5 cut(s)	192, 207, 208, 342, 512
NdeII	GATC	1 cut(s)	506
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	317, 538
NlaIV	GGNNCC	7 cut(s)	216, 339, 373, 417, 508, 596, 664
NmuCI	GTSAC	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	86
PagI	TCATGA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 799
PdiI	GCCGGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	4 cut(s)	37, 139, 531, 763
PinAI	ACCGGT	1 cut(s)	591
PkrI	GCNGC	3 cut(s)	31, 111, 225
PleI	GAGTC	3 cut(s)	12, 18, 397
PpsI	GAGTC	3 cut(s)	12, 18, 397
PshBI	ATTAAT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	4 cut(s)	126, 218, 282, 646
PspGI	CCWGG	4 cut(s)	126, 218, 282, 646
PspN4I	GGNNCC	7 cut(s)	216, 339, 373, 417, 508, 596, 664
PspPI	GGNCC	3 cut(s)	124, 189, 214
PsuI	RGATCY	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	3 cut(s)	273, 324, 825
SatI	GCNGC	3 cut(s)	30, 110, 224
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	3 cut(s)	124, 189, 214
SchI	GAGTC	3 cut(s)	13, 19, 398
ScrFI	CCNGG	9 cut(s)	128, 192, 207, 208, 220, 284, 342, 512, 648
SduI	GDGCHC	3 cut(s)	20, 656, 793
SexAI	ACCWGGT	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	471
SfuI	TTCGAA	1 cut(s)	86
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	214
SmaI	CCCGGG	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	329, 485
SmoI	CTYRAG	2 cut(s)	329, 485
Sse9I	AATT	4 cut(s)	195, 744, 752, 826
SsiI	CCGC	4 cut(s)	29, 178, 224, 528
SspMI	CTAG	2 cut(s)	447, 737
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	9 cut(s)	126, 190, 205, 206, 218, 282, 340, 510, 646
TaiI	ACGT	2 cut(s)	236, 567
TaqI	TCGA	2 cut(s)	35, 86
TasI	AATT	4 cut(s)	195, 744, 752, 826
TauI	GCSGC	2 cut(s)	32, 226
TfiI	GAWTC	4 cut(s)	37, 139, 531, 763
Tru1I	TTAA	3 cut(s)	273, 324, 825
Tru9I	TTAA	3 cut(s)	273, 324, 825
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	302, 380, 523, 551
TspGWI	ACGGA	1 cut(s)	189
TspMI	CCCGGG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	2 cut(s)	195, 752
XmaI	CCCGGG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	2 cut(s)	447, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.