Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007746

Physical Location & Seq

Genomic Coordinates Forward (+)

68283089 .. 68288958

Gene Structure 5870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG489600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGTCATCGGCGGTGGAGTATTTACGTCCGACAATCCACACTCGGTTCTGCTTGTACTCCAATTCTAATCTCCGTCACTGCAGTAATGGATTGGGCTTCTTCTTCCTCCGCGGCGCCCAGTCTAGGGTTTTCAGTCCCGACGTGAAACGCTGCGTTTCGGCGGCGCCGTTCCCGAATGTTGCGAGGGTCTCCGAGAAAAGGTTCGGGCATGTGGGAGGTTACAATGGAGGAGGGTTCAGGACGGTTAGGGTTTTTGCGAACGAGCCGGAGAGCGATTCCGGCGAGAAGAGCGAGGCAAGCGAGGGGCAGGGCGTGAATGGCCAGACGCCGAGTCCGAGTCCGAGTCCGAGCTCGTCGCCGGCGGCGTCGAATCCGAGAAGAGGAGAGAGGCAGAAGAAGAAGGAGAGCTGGTGGTTTTCGAAAGGAGGGAAATGGAAGTGGCAGCCGATTGTGCAGGCCCAGGAGATTGGGATTCTGCTGTTGCAGTTGGGGATTGTTATTGTCGTTATGCGGTTGCTCCGGCCCGGAATTCCGTTGCCCGGGTCGGACCCCAGGCCGCCGACGACGTTTATTAGTGTGCCTTATAGTGACTTTTTGAGTAAGATTAATACTAACCAGGTGCAGAAGGTGGAGGTTGATGGGGTTCATGTTATGTTTAAGCTCAAGTCGGAGCAGGGTGGTGAGGTGGAGAGTGAAATGAATGGTGCCAGTAAGTTTCAGGAGTCGGAGGCTTTGCTAAGAAGTGTGGCTCCGACGAGGAGGGTGGTTTATACGACCACTAGGCCGACTGATATCAAGACTCCGTATGAGAAGATGCTTGAGAATGAGGTGGAGTTTGGGTCCCCGGATAAGCGCTCCGGCGGATTCATGAACTCTGCGATGATAGCTTTGTTTTACGTTGCTGTGCTTGCAGGGCTTCTCCACCGGTTCCCTGTTAGCTTTTCTCAGCATACTGCTGGTCAGATTAGGAATAGAAAACCTGGGGGCTCTGGTGGTGCCAAAACATCTGAACCCTCGGAAGCAATAACCTTTGCTGATGTTGCTGGTGTTGACGAGGCTAAGGAGGAGCTAGAGGAAATTGTGGAATTTCTTCGGAATCCAGACAGGTATATACGACTTGGTGCTCGTCCTCCCCGTGGTGTTCTGCTGGTGGGTCTTCCTGGGACAGGTAAGACTCTTCTTGCAAAGGCTGTGGCTGGGGAAGCTGAAGTACCCTTTATAAGTTGCTCTGCTAGTGAGTTCGTAGAGCTCTATGTGGGCATGGGTGCCTCTCGTGTAAGGGACCTATTTGCACGGGCCAAAAAGGAAGCACCGTCAATAATATTTATTGATGAGATAGATGCTGTGGCAAAAAGTCGTGATGGAAAACACCGCATTGTCAGCAATGACGAGAGAGAACAAACATTGAATCAGTTGCTCACTGAGATGGATGGGTTTGACAGCAACTCTGCGGTTATTGTTCTTGGAGCTACTAATCGCGCAGATGTTTTAGACCCAGCACTTCGTCGACCAGGGAGATTTGATCGTGTAGTTATGGTGGAAACGCCTGATAGGATTGGAAGAGAATCAATTCTCAAAGTGCATGTTTCCAAAAAGGAACTTCCTTTAGCTAAAGATGTTTACCTTGGTGACATTGCTTCTATGACCACAGGCTTTACTGGGGCTGATCTTGCAAATTTGGTGAATGAAGCTGCTTTGTTGGCCGGAAGACAAAGCAAGGTGGTTGTGGAAAAGATTGATTTCATTCAGGCTGTGGAGAGATCAATAGCTGGAATTGAAAAGAAGACTGCCAAGTTGCAGGGATGTGAGAAGGGTGTAGTTGCACGACATGAAGCTGGTCATGCAGTTGTAGGGACAGCTATTGCAAGTCTTGTTGCTGGACAGCCACGTGTGGAGAAATTGAGCATATTGCCAAGGACAGGGGGGGCATTGGGTTTTACTTACACTCCTCCAGCGACTGAAGATAGATATTTACTATTCATTGATGAGTTACGTGGACGTTTGGTTACACTTCTTGGAGGACGCGCAGCAGAGGAGTTTGTATATTCAGGTCGTGTATCAACTGGTGCGCTTGATGACATACGGCGAGCCACGGAAATGGCATATAAAGCAGTATCTGAGTATGGTCTTAATGAGAACATTGGCCCTGTGTCTATAGCAACACTTTCTGCTGGTGGAATGGATGAGTCTGGGGGACTTTTTGGAAGGGATCAGGGACACCTTGTTAATCTTGCTCAACGAGAGACTCAAGAATTGCTGCAATCTGCTATGGAGGTAGCCCTTTGTGTTGTACGTGCTAATCCTGTTGTTTTGGAGGGCCTTGGTGCTCATTTGGAAGGTAATATTCTTTTGCTTTGTTTTCCTTTTTTCTTATTTAATTATTTTATCATGGTATTTCATGTGTTCCTAGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

805

Amino Acids

87.53

Weight (kDa)

8.28

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	381 - 514	1.1e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	539 - 581	3.7e-10	AAA+ lid domain
Peptidase_M41	PF01434	602 - 769	4.4e-30	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47060 AT5G58870
fragaria_vesca	FvH4_3g38190 FvH4_3g38190 FvH4_3g38190
malus_domestica	MD03G1074100.v1.1 MD11G1080400.v1.1
prunus_persica	Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1
pyrus_communis	pycom03g05990 pycom11g06770
rosa_chinensis	RchiOBHm_Chr5g0068621
rosa_laevigata	RLG00000035985
rosa_multiflora	Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012250
rosa_rugosa	Rorug05G0392000
rosa_samantha	Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200
rosa_wichuraiana	Rw5G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1220
AccB1I	GGYRCC	5 cut(s)	113, 163, 704, 995, 1265
AccI	GTMKAC	1 cut(s)	1507
AccII	CGCG	3 cut(s)	111, 1479, 2025
AclWI	GGATC	1 cut(s)	2217
AcoI	YGGCCR	2 cut(s)	319, 1701
AcsI	RAATTY	3 cut(s)	528, 1085, 1675
AcuI	CTGAAG	2 cut(s)	1227, 1980
AcvI	CACGTG	1 cut(s)	1889
AcyI	GRCGYC	4 cut(s)	114, 164, 326, 365
AfaI	GTAC	3 cut(s)	56, 1212, 2292
AfeI	AGCGCT	1 cut(s)	854
AfiI	CCNNNNNNNGG	8 cut(s)	123, 124, 198, 380, 539, 1136, 1166, 1919
AflIII	ACRYGT	1 cut(s)	1888
AgeI	ACCGGT	1 cut(s)	924
AgsI	TTSAA	2 cut(s)	1408, 1778
AhdI	GACNNNNNGTC	1 cut(s)	330
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	6 cut(s)	459, 551, 615, 979, 1159, 1510
Alw21I	GWGCWC	4 cut(s)	353, 1126, 1251, 2329
Alw26I	GTCTC	2 cut(s)	193, 2237
AlwI	GGATC	1 cut(s)	2217
AlwNI	CAGNNNCTG	2 cut(s)	1958, 2117
Ama87I	CYCGRG	1 cut(s)	539
Aor51HI	AGCGCT	1 cut(s)	854
AoxI	GGCC	9 cut(s)	319, 456, 521, 554, 782, 1296, 1701, 2143, 2317
ApeKI	GCWGC	5 cut(s)	150, 442, 1691, 2027, 2257
ApoI	RAATTY	3 cut(s)	528, 1085, 1675
AseI	ATTAAT	1 cut(s)	606
AsiGI	ACCGGT	1 cut(s)	924
Asp700I	GAANNNNTTC	3 cut(s)	200, 1089, 1569
AspLEI	GCGC	6 cut(s)	116, 166, 855, 1481, 2027, 2071
AspS9I	GGNCC	8 cut(s)	457, 522, 547, 840, 1282, 1296, 2144, 2317
AsuC2I	CCSGG	4 cut(s)	525, 540, 541, 845
AsuHPI	GGTGA	3 cut(s)	692, 1640, 1693
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	3 cut(s)	547, 840, 1282
BalI	TGGCCA	1 cut(s)	321
BanI	GGYRCC	5 cut(s)	113, 163, 704, 995, 1265
BanII	GRGCYC	3 cut(s)	353, 989, 1251
BarI	GAAGNNNNNNTAC	2 cut(s)	1194, 1226
BauI	CACGAG	1 cut(s)	1272
BbrPI	CACGTG	1 cut(s)	1889
BbsI	GAAGAC	3 cut(s)	1148, 1714, 1790
Bbv12I	GWGCWC	4 cut(s)	353, 1126, 1251, 2329
BbvI	GCAGC	5 cut(s)	137, 454, 1678, 2039, 2244
BccI	CCATC	4 cut(s)	632, 1355, 1420, 1424
BceAI	ACGGC	2 cut(s)	151, 2099
BciT130I	CCWGG	6 cut(s)	461, 553, 617, 981, 1161, 1512
BcnI	CCSGG	4 cut(s)	525, 540, 541, 845
BcoDI	GTCTC	2 cut(s)	193, 2237
BfaI	CTAG	5 cut(s)	123, 780, 1070, 1233, 2408
BfmI	CTRYAG	2 cut(s)	79, 2154
BfoI	RGCGCY	3 cut(s)	117, 167, 856
BisI	GCNGC	9 cut(s)	112, 151, 162, 363, 443, 557, 1692, 2028, 2258
BlsI	GCNGC	9 cut(s)	113, 152, 163, 364, 444, 558, 1693, 2029, 2259
Bme18I	GGWCC	3 cut(s)	547, 840, 1282
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	8 cut(s)	457, 522, 547, 840, 1282, 1296, 2144, 2317
BmrI	ACTGGG	2 cut(s)	112, 1668
BmsI	GCATC	2 cut(s)	804, 1330
BmuI	ACTGGG	2 cut(s)	112, 1668
BpiI	GAAGAC	3 cut(s)	1148, 1714, 1790
BpmI	CTGGAG	1 cut(s)	1935
Bpu10I	CCTNAGC	1 cut(s)	1059
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	3 cut(s)	647, 839, 2232
BpuMI	CCSGG	4 cut(s)	525, 540, 541, 845
BsaAI	YACGTR	3 cut(s)	1889, 1994, 2294
BsaHI	GRCGYC	4 cut(s)	114, 164, 326, 365
BsaI	GGTCTC	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	924
BsaXI	ACNNNNNCTCC	6 cut(s)	395, 425, 824, 854, 1930, 1960
Bsc4I	CCNNNNNNNGG	8 cut(s)	123, 124, 198, 380, 539, 1136, 1166, 1919
Bse118I	RCCGGY	2 cut(s)	358, 924
Bse1I	ACTGG	4 cut(s)	118, 708, 1663, 2068
Bse3DI	GCAATG	2 cut(s)	1390, 1632
BseBI	CCWGG	6 cut(s)	461, 553, 617, 981, 1161, 1512
BseGI	GGATG	3 cut(s)	1435, 1808, 2188
BseLI	CCNNNNNNNGG	8 cut(s)	123, 124, 198, 380, 539, 1136, 1166, 1919
BseMI	GCAATG	2 cut(s)	1390, 1632
BseMII	CTCAG	3 cut(s)	959, 1413, 2109
BseNI	ACTGG	4 cut(s)	118, 708, 1663, 2068
BseRI	GAGGAG	6 cut(s)	243, 396, 772, 1079, 1938, 2048
BseXI	GCAGC	5 cut(s)	137, 454, 1678, 2039, 2244
BseYI	CCCAGC	2 cut(s)	1196, 1495
BsgI	GTGCAG	2 cut(s)	473, 641
Bsh1236I	CGCG	3 cut(s)	111, 1479, 2025
BshFI	GGCC	9 cut(s)	321, 458, 523, 556, 784, 1298, 1703, 2145, 2319
BshNI	GGYRCC	5 cut(s)	113, 163, 704, 995, 1265
BshTI	ACCGGT	1 cut(s)	924
BsiHKAI	GWGCWC	4 cut(s)	353, 1126, 1251, 2329
BsiHKCI	CYCGRG	1 cut(s)	539
BslFI	GGGAC	7 cut(s)	120, 826, 1177, 1295, 1867, 2208, 2229
BslI	CCNNNNNNNGG	8 cut(s)	123, 124, 198, 380, 539, 1136, 1166, 1919
BsmAI	GTCTC	2 cut(s)	193, 2237
BsmFI	GGGAC	7 cut(s)	120, 826, 1177, 1295, 1867, 2208, 2229
BsnI	GGCC	9 cut(s)	321, 458, 523, 556, 784, 1298, 1703, 2145, 2319
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	539
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	5 cut(s)	353, 989, 1126, 1251, 2329
Bsp143I	GATC	4 cut(s)	1522, 1666, 1760, 2209
BspANI	GGCC	9 cut(s)	321, 458, 523, 556, 784, 1298, 1703, 2145, 2319
BspCNI	CTCAG	3 cut(s)	958, 1414, 2110
BspFNI	CGCG	3 cut(s)	111, 1479, 2025
BspHI	TCATGA	1 cut(s)	867
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	2217
BspQI	GCTCTTC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	5 cut(s)	113, 163, 704, 995, 1265
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	2 cut(s)	1390, 1632
BsrFI	RCCGGY	2 cut(s)	358, 924
BsrI	ACTGG	4 cut(s)	118, 708, 1663, 2068
BssAI	RCCGGY	2 cut(s)	358, 924
BssMI	GATC	4 cut(s)	1522, 1666, 1760, 2209
BssNI	GRCGYC	4 cut(s)	114, 164, 326, 365
BssSI	CACGAG	1 cut(s)	1272
BssT1I	CCWWGG	3 cut(s)	1624, 1913, 2320
Bst2BI	CACGAG	1 cut(s)	1272
Bst2UI	CCWGG	6 cut(s)	461, 553, 617, 981, 1161, 1512
Bst4CI	ACNGT	2 cut(s)	244, 1314
Bst6I	CTCTTC	4 cut(s)	281, 373, 1182, 1555
BstACI	GRCGYC	4 cut(s)	114, 164, 326, 365
BstBAI	YACGTR	3 cut(s)	1889, 1994, 2294
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	5 cut(s)	298, 360, 456, 909, 2088
BstDEI	CTNAG	5 cut(s)	737, 945, 1059, 1422, 2118
BstDSI	CCRYGG	3 cut(s)	109, 1135, 2091
BstENI	CCTNNNNNAGG	1 cut(s)	1164
BstF5I	GGATG	3 cut(s)	1435, 1808, 2188
BstFNI	CGCG	3 cut(s)	111, 1479, 2025
BstH2I	RGCGCY	3 cut(s)	117, 167, 856
BstHHI	GCGC	6 cut(s)	116, 166, 855, 1481, 2027, 2071
BstKTI	GATC	4 cut(s)	1525, 1669, 1763, 2212
BstMAI	GTCTC	2 cut(s)	193, 2237
BstMBI	GATC	4 cut(s)	1522, 1666, 1760, 2209
BstNI	CCWGG	6 cut(s)	461, 553, 617, 981, 1161, 1512
BstNSI	RCATGY	2 cut(s)	212, 1586
BstSFI	CTRYAG	2 cut(s)	79, 2154
BstUI	CGCG	3 cut(s)	111, 1479, 2025
BstV1I	GCAGC	5 cut(s)	137, 454, 1678, 2039, 2244
BstV2I	GAAGAC	3 cut(s)	1148, 1714, 1790
BstXI	CCANNNNNNTGG	2 cut(s)	467, 2098
BsuRI	GGCC	9 cut(s)	321, 458, 523, 556, 784, 1298, 1703, 2145, 2319
BtgI	CCRYGG	3 cut(s)	109, 1135, 2091
BtgZI	GCGATG	1 cut(s)	893
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	1435, 1808, 2188
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 1419
Cac8I	GCNNGC	5 cut(s)	298, 360, 456, 909, 2088
CaiI	CAGNNNCTG	2 cut(s)	1958, 2117
CciI	TCATGA	1 cut(s)	867
CfoI	GCGC	6 cut(s)	116, 166, 855, 1481, 2027, 2071
Cfr10I	RCCGGY	2 cut(s)	358, 924
Cfr13I	GGNCC	8 cut(s)	457, 522, 547, 840, 1282, 1296, 2144, 2317
Cfr42I	CCGCGG	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	539
CseI	GACGC	3 cut(s)	334, 354, 2031
CsiI	ACCWGGT	1 cut(s)	615
Csp6I	GTAC	3 cut(s)	55, 1211, 2291
CspAI	ACCGGT	1 cut(s)	924
CspCI	CAANNNNNGTGG	2 cut(s)	1173, 1208
CviAII	CATG	9 cut(s)	209, 647, 868, 1261, 1583, 1829, 1841, 2389, 2399
CviQI	GTAC	3 cut(s)	55, 1211, 2291
DdeI	CTNAG	5 cut(s)	737, 945, 1059, 1422, 2118
DinI	GGCGCC	2 cut(s)	115, 165
DpnI	GATC	4 cut(s)	1524, 1668, 1762, 2211
DpnII	GATC	4 cut(s)	1522, 1666, 1760, 2209
DriI	GACNNNNNGTC	1 cut(s)	330
EaeI	YGGCCR	2 cut(s)	319, 1701
Eam1104I	CTCTTC	4 cut(s)	281, 373, 1182, 1555
Eam1105I	GACNNNNNGTC	1 cut(s)	330
EarI	CTCTTC	4 cut(s)	281, 373, 1182, 1555
EciI	GGCGGA	1 cut(s)	876
Ecl136II	GAGCTC	2 cut(s)	351, 1249
Eco130I	CCWWGG	3 cut(s)	1624, 1913, 2320
Eco24I	GRGCYC	3 cut(s)	353, 989, 1251
Eco31I	GGTCTC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	3 cut(s)	547, 840, 1282
Eco47III	AGCGCT	1 cut(s)	854
Eco53kI	GAGCTC	2 cut(s)	351, 1249
Eco57I	CTGAAG	2 cut(s)	1227, 1980
Eco72I	CACGTG	1 cut(s)	1889
Eco88I	CYCGRG	1 cut(s)	539
EcoICRI	GAGCTC	2 cut(s)	351, 1249
EcoNI	CCTNNNNNAGG	1 cut(s)	1164
EcoO109I	RGGNCCY	3 cut(s)	840, 1282, 2317
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	6 cut(s)	459, 551, 615, 979, 1159, 1510
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	3 cut(s)	1624, 1913, 2320
EcoT38I	GRGCYC	3 cut(s)	353, 989, 1251
EgeI	GGCGCC	2 cut(s)	115, 165
EheI	GGCGCC	2 cut(s)	115, 165
ErhI	CCWWGG	3 cut(s)	1624, 1913, 2320
FaeI	CATG	9 cut(s)	212, 650, 871, 1264, 1586, 1832, 1844, 2392, 2402
FaqI	GGGAC	7 cut(s)	120, 826, 1177, 1295, 1867, 2208, 2229
FatI	CATG	9 cut(s)	208, 646, 867, 1260, 1582, 1828, 1840, 2388, 2398
FblI	GTMKAC	1 cut(s)	1507
Fnu4HI	GCNGC	9 cut(s)	112, 151, 162, 363, 443, 557, 1692, 2028, 2258
FokI	GGATG	3 cut(s)	1442, 1815, 2195
FriOI	GRGCYC	3 cut(s)	353, 989, 1251
Fsp4HI	GCNGC	9 cut(s)	112, 151, 162, 363, 443, 557, 1692, 2028, 2258
FspBI	CTAG	5 cut(s)	123, 780, 1070, 1233, 2408
GlaI	GCGC	6 cut(s)	115, 165, 854, 1480, 2026, 2070
GluI	GCNGC	9 cut(s)	112, 151, 162, 363, 443, 557, 1692, 2028, 2258
GsaI	CCCAGC	2 cut(s)	1200, 1499
GsuI	CTGGAG	1 cut(s)	1935
HaeII	RGCGCY	3 cut(s)	117, 167, 856
HaeIII	GGCC	9 cut(s)	321, 458, 523, 556, 784, 1298, 1703, 2145, 2319
HgaI	GACGC	3 cut(s)	334, 354, 2031
HhaI	GCGC	6 cut(s)	116, 166, 855, 1481, 2027, 2071
Hin1I	GRCGYC	4 cut(s)	114, 164, 326, 365
Hin1II	CATG	9 cut(s)	212, 650, 871, 1264, 1586, 1832, 1844, 2392, 2402
Hin6I	GCGC	6 cut(s)	114, 164, 853, 1479, 2025, 2069
HinP1I	GCGC	6 cut(s)	114, 164, 853, 1479, 2025, 2069
HincII	GTYRAC	2 cut(s)	1051, 1508
HindII	GTYRAC	2 cut(s)	1051, 1508
HphI	GGTGA	3 cut(s)	692, 1640, 1693
Hpy166II	GTNNAC	4 cut(s)	1051, 1508, 1621, 1997
Hpy188III	TCNNGA	9 cut(s)	137, 172, 238, 719, 796, 868, 1100, 1358, 2249
Hpy8I	GTNNAC	4 cut(s)	1051, 1508, 1621, 1997
Hpy99I	CGWCG	7 cut(s)	143, 358, 370, 565, 568, 757, 1509
HpyAV	CCTTC	5 cut(s)	394, 619, 1804, 2199, 2330
HpyCH4III	ACNGT	2 cut(s)	244, 1314
HpyCH4IV	ACGT	8 cut(s)	25, 141, 566, 897, 1888, 1993, 1999, 2293
HpyF3I	CTNAG	5 cut(s)	737, 945, 1059, 1422, 2118
HpySE526I	ACGT	8 cut(s)	25, 141, 566, 897, 1888, 1993, 1999, 2293
Hsp92I	GRCGYC	4 cut(s)	114, 164, 326, 365
Hsp92II	CATG	9 cut(s)	212, 650, 871, 1264, 1586, 1832, 1844, 2392, 2402
HspAI	GCGC	6 cut(s)	114, 164, 853, 1479, 2025, 2069
KasI	GGCGCC	2 cut(s)	113, 163
KflI	GGGWCCC	1 cut(s)	840
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	1522, 1666, 1760, 2209
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	6 cut(s)	522, 670, 754, 860, 1066, 1466
Lsp1109I	GCAGC	5 cut(s)	137, 454, 1678, 2039, 2244
LweI	GCATC	2 cut(s)	804, 1330
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	5 cut(s)	123, 780, 1070, 1233, 2408
MaeII	ACGT	8 cut(s)	25, 141, 566, 897, 1888, 1993, 1999, 2293
MaeIII	GTNAC	6 cut(s)	74, 218, 587, 1628, 1989, 2005
MalI	GATC	4 cut(s)	1524, 1668, 1762, 2211
MboI	GATC	4 cut(s)	1522, 1666, 1760, 2209
MhlI	GDGCHC	5 cut(s)	353, 989, 1126, 1251, 2329
MlsI	TGGCCA	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	321
Mly113I	GGCGCC	2 cut(s)	114, 164
MlyI	GAGTC	8 cut(s)	340, 346, 352, 731, 793, 1168, 2195, 2239
MmeI	TCCRAC	5 cut(s)	53, 525, 648, 705, 776
Mox20I	TGGCCA	1 cut(s)	321
MreI	CGCCGGCG	1 cut(s)	358
MroNI	GCCGGC	1 cut(s)	358
MroXI	GAANNNNTTC	3 cut(s)	200, 1089, 1569
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	5 cut(s)	606, 657, 2130, 2226, 2376
MslI	CAYNNNNRTG	2 cut(s)	1424, 2096
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	111
MvaI	CCWGG	6 cut(s)	461, 553, 617, 981, 1161, 1512
MvnI	CGCG	3 cut(s)	111, 1479, 2025
NaeI	GCCGGC	1 cut(s)	360
NarI	GGCGCC	2 cut(s)	114, 164
NciI	CCSGG	4 cut(s)	525, 540, 541, 845
NdeII	GATC	4 cut(s)	1522, 1666, 1760, 2209
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	9 cut(s)	212, 650, 871, 1264, 1586, 1832, 1844, 2392, 2402
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	3 cut(s)	74, 587, 1628
NspI	RCATGY	2 cut(s)	212, 1586
NspV	TTCGAA	1 cut(s)	419
PagI	TCATGA	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	4 cut(s)	164, 332, 362, 1132
PdiI	GCCGGC	1 cut(s)	360
PdmI	GAANNNNTTC	3 cut(s)	200, 1089, 1569
PfeI	GAWTC	7 cut(s)	275, 370, 472, 864, 1096, 1408, 1565
PinAI	ACCGGT	1 cut(s)	924
PkrI	GCNGC	9 cut(s)	113, 152, 163, 364, 444, 558, 1693, 2029, 2259
PleI	GAGTC	8 cut(s)	339, 345, 351, 730, 793, 1168, 2194, 2239
PluTI	GGCGCC	2 cut(s)	117, 167
PmaCI	CACGTG	1 cut(s)	1889
PmlI	CACGTG	1 cut(s)	1889
PpsI	GAGTC	8 cut(s)	339, 345, 351, 730, 793, 1168, 2194, 2239
Ppu21I	YACGTR	3 cut(s)	1889, 1994, 2294
PpuMI	RGGWCCY	2 cut(s)	840, 1282
PshBI	ATTAAT	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	1220
Psp124BI	GAGCTC	2 cut(s)	353, 1251
Psp5II	RGGWCCY	2 cut(s)	840, 1282
Psp6I	CCWGG	6 cut(s)	459, 551, 615, 979, 1159, 1510
PspCI	CACGTG	1 cut(s)	1889
PspFI	CCCAGC	2 cut(s)	1196, 1495
PspGI	CCWGG	6 cut(s)	459, 551, 615, 979, 1159, 1510
PspPI	GGNCC	8 cut(s)	457, 522, 547, 840, 1282, 1296, 2144, 2317
PspPPI	RGGWCCY	2 cut(s)	840, 1282
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	2 cut(s)	1958, 2117
RsaI	GTAC	3 cut(s)	56, 1212, 2292
RsaNI	GTAC	3 cut(s)	55, 1211, 2291
RseI	CAYNNNNRTG	2 cut(s)	1424, 2096
SacI	GAGCTC	2 cut(s)	353, 1251
SacII	CCGCGG	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	1506
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	5 cut(s)	606, 657, 2130, 2226, 2376
SatI	GCNGC	9 cut(s)	112, 151, 162, 363, 443, 557, 1692, 2028, 2258
Sau3AI	GATC	4 cut(s)	1522, 1666, 1760, 2209
Sau96I	GGNCC	8 cut(s)	457, 522, 547, 840, 1282, 1296, 2144, 2317
SchI	GAGTC	8 cut(s)	340, 346, 352, 731, 793, 1168, 2195, 2239
SduI	GDGCHC	5 cut(s)	353, 989, 1126, 1251, 2329
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	2 cut(s)	804, 1330
SfcI	CTRYAG	2 cut(s)	79, 2154
SfoI	GGCGCC	2 cut(s)	115, 165
Sfr303I	CCGCGG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	419
SgrAI	CRCCGGYG	1 cut(s)	358
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	547, 840, 1282
SmaI	CCCGGG	1 cut(s)	541
SmiMI	CAYNNNNRTG	2 cut(s)	1424, 2096
SmlI	CTYRAG	3 cut(s)	662, 818, 2247
SmoI	CTYRAG	3 cut(s)	662, 818, 2247
SspDI	GGCGCC	2 cut(s)	113, 163
SspI	AATATT	2 cut(s)	1323, 2344
SspMI	CTAG	5 cut(s)	123, 780, 1070, 1233, 2408
SstI	GAGCTC	2 cut(s)	353, 1251
StyI	CCWWGG	3 cut(s)	1624, 1913, 2320
TaaI	ACNGT	2 cut(s)	244, 1314
TaiI	ACGT	8 cut(s)	28, 144, 569, 900, 1891, 1996, 2002, 2296
TaqI	TCGA	3 cut(s)	368, 419, 1507
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	4 cut(s)	114, 164, 365, 559
TfiI	GAWTC	7 cut(s)	275, 370, 472, 864, 1096, 1408, 1565
Tru1I	TTAA	5 cut(s)	606, 657, 2130, 2226, 2376
Tru9I	TTAA	5 cut(s)	606, 657, 2130, 2226, 2376
TscAI	CASTG	2 cut(s)	83, 1426
TseFI	GTSAC	3 cut(s)	74, 587, 1628
TseI	GCWGC	5 cut(s)	150, 442, 1691, 2027, 2257
Tsp45I	GTSAC	3 cut(s)	74, 587, 1628
TspDTI	ATGAA	9 cut(s)	635, 713, 856, 884, 1701, 1732, 1845, 1969, 2387
TspGWI	ACGGA	4 cut(s)	62, 522, 792, 2108
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	2 cut(s)	83, 1426
VpaK11BI	GGWCC	3 cut(s)	547, 840, 1282
VspI	ATTAAT	1 cut(s)	606
XagI	CCTNNNNNAGG	1 cut(s)	1164
XapI	RAATTY	3 cut(s)	528, 1085, 1675
XceI	RCATGY	2 cut(s)	212, 1586
XmaI	CCCGGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	1507
XmnI	GAANNNNTTC	3 cut(s)	200, 1089, 1569
XspI	CTAG	5 cut(s)	123, 780, 1070, 1233, 2408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.