Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007746

Physical Location & Seq

Genomic Coordinates Forward (+)

75875917 .. 75880918

Gene Structure 5002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG481200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGTCATCGGCGGTGGAGTATTTACGTCCGACAATCCACACTCGGTTCTGCTTGTACTCCAATTCTAATCTCCGTCACTGCAGTAATGGATTGGGCTTCTTCTACCTCCACGGCGCCCAGTCTAGGGTTTTCAGTCCCGACGTGAAACGCTGCGTTTCGGCGGCGCCGTTCCCGAAGGTTGCGAGGGTCTCCGAGAAAAGGTTCGGGCACAATGGAGGAGGGTTCAGGACGGTTAGGGTTTTGGCGAACGAGCCGGAGAGCGATTCCGGCGAGAGGAGCGAGGCAAGCGAGGGGCAGGGTGTGAATGGCCAGACGCCGAGTCCGAGTCCGAGCTCGTCGCCGGCGGCGTCCAATCCGAGAAGAGGAGAGAGGCAGAAGAAGAAAGAGAGCTGGTGGTTTTCGAAAGGAGGGAAATGGAAGTGGCAGCCGATTGTGCAGGCCCAGGAGATTGGGATTCTGCTGTTGCAGTTGGGGATTGTGATTTTCGTTATGCGGTTGCTCCGGCCCGGAATTCCGTTGCCCGGGTCCGACCCGAGGCCGCCGACGACGTTTATAAGTGTGCCGTATAGTGACTTTTTGAGTAAGATTAATACTAACCAGGTGCAGAAGGTGGAGGTTGATGGGGTTCATGTTATGTTTAAGCTCAAGTCGGAGCCGGGTGGTGAGGTGGAGAGTGAAATGAATGGTGCCAGTAAGCTTCAGGAGTCGGAGGCTTTGATAAGAAGTGTGGCTCCGACGAGGAGGGTGGTTTATACGACGACCAGGCCAACTGATATCAAGACGCCGTATGAGAAGATGCTTGAGAATGAGGTGGAGTTTGGGTCGCCGGATAAGCGCTCCGGCGGATTCATGAACTCTGCGATGATAGCTTTGTTTTATGTTGCTGTGCTTGCAGGGCTTCTCCACAGGTTCCCTGTAAGCTTTTCTCAGCATACGGCTGGTCAGATTAGGAATAGAAAACCTGGGGGCTCTGGTGGTGCCAAAACATCTGAACCCTCGGAAGCAATAACCTTTGCTGATGTTGCTGGTGTTGATGAGGCTAAGGAGGAGCTAGAGGAAATTGTGGAATTTCTTCGGAATCCAGACAGGTATATACGACTTGGTGCTCGTCCTCCCCGTGGTGTTCTGCTGGTGGGTCTTCCTGGGACAGGTAAGACTCTTCTTGCAAAGGCTGTGGCTGGGGAAGCTGAAGTACCCTTTATAAGTTGCTCTGCTAGTGAGTTCGTAGAGCTCTATGTGGGCATGGGTGCCTCTCGTGTAAGGGACCTATTTGCACGGGCAAAAAAGGAAGCACCGTCAATAATATTTATTGATGAGATAGATGCTGTGGCAAAAAGTCGTGATGGAAAACACCGCATTGTCAGCAATGACGAGAGAGAACAAACATTGAATCAGTTGCTCACTGAGATGGATGGGTTTGACAGCAACTCTGCGGTTATTGTTCTTGGAGCTACTAATCGCGCAGATGTTTTAGACCCGGCACTTCGTCGACCGGGGAGATTTGATCGTGTAGTTATGGTGGAAACGCCTGATAGGATTGGAAGAGAATCAATTCTCAAAGTGCATGTTTCCAAAAAGGAACTTCCTTTAGCTAAAGATGTTTACCTTGGTGACATTGCTTCTATGACCACAGGCTTTACTGGGGCTGATCTTGCAAATTTGGTGAATGAAGCTGCTTTGTTGGCCGGAAGACAAAGCAAGTTGGTTGTGGAAAAGATTGATTTCATTCAGGCTGTGGAGAGATCAATAGCTGGAATTGAAAAGAAGACTGCCAAGTTGCAGGGATGTGAGAAGGGTGTAGTTGCACGACATGAAGCTGGTCATGCAGTTGTAGGGACAGCTATTGCAAGTCTTGTTGCTGGACAGCCACGTGTGGAGAAATTGAGCATATTGCCAAGGACAGGGGGGGCATTGGGCTTTACTTACACTCCTCCAGCGACTGAAGATAGATATTTACTATTCATTGATGAGTTACGTGGACGTTTGGTTACGCTTCTTGGAGGACGTGCAGCAGAGGAGTTTGTATATTCAGGTCGTGTATCAACTGGTGCGCTTGATGACATACGGCGAGCCACGGAAATGGCATATAAAGCAGTATCTGAGTATGGTCTTAATGAGAACATTGGCCCTGTGTCTATAGCAACACTTTCTGCTGGTGGAATGGATGAGTCTGGGGGACTTTTTGGAAGGGATCAGGGACACCTTGTTAATCTTGCTCAACGAGAGACTCAAGAATTGCTGCAATCTGCTATGGAGGTAGCCCTTTGTGTTGTACGTGCTAATCCTGTTGTTTTGGAGGGCCTTGGTGCTCATTTGGAAGAAAAAGAGAAAGTAGAAGGTGAAGAGCTACACAAGTGGTTAAAAATGGTGGTTGCACCAGCAGAACTTGCTGCCTTCATTAAAGGCAAGCAACAGGCCCTTCTTCCATTGCAGACCACCTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

815

Amino Acids

88.45

Weight (kDa)

8.29

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	375 - 508	1.1e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	533 - 575	2.1e-10	AAA+ lid domain
Peptidase_M41	PF01434	596 - 784	1.1e-32	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47060 AT5G58870
fragaria_vesca	FvH4_3g38190 FvH4_3g38190 FvH4_3g38190
malus_domestica	MD03G1074100.v1.1 MD11G1080400.v1.1
prunus_persica	Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1
pyrus_communis	pycom03g05990 pycom11g06770
rosa_chinensis	RchiOBHm_Chr5g0068621
rosa_laevigata	RLG00000035985
rosa_multiflora	Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012250
rosa_rugosa	Rorug05G0392000
rosa_samantha	Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200
rosa_wichuraiana	Rw5G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	554, 1202
AccB1I	GGYRCC	5 cut(s)	113, 163, 686, 977, 1247
AccI	GTMKAC	1 cut(s)	1489
AccII	CGCG	1 cut(s)	1461
AciI	CCGC	8 cut(s)	11, 161, 344, 493, 539, 843, 1354, 1433
AclWI	GGATC	1 cut(s)	2199
AcoI	YGGCCR	2 cut(s)	307, 1683
AcsI	RAATTY	3 cut(s)	510, 1067, 1657
AcuI	CTGAAG	3 cut(s)	683, 1209, 1962
AcvI	CACGTG	1 cut(s)	1871
AcyI	GRCGYC	5 cut(s)	114, 164, 314, 347, 782
AfaI	GTAC	3 cut(s)	56, 1194, 2274
AfeI	AGCGCT	1 cut(s)	836
AflIII	ACRYGT	1 cut(s)	1870
AgsI	TTSAA	2 cut(s)	1390, 1760
AhdI	GACNNNNNGTC	1 cut(s)	318
AjiI	CACGTC	2 cut(s)	142, 2006
AjnI	CCWGG	5 cut(s)	441, 597, 761, 961, 1141
Alw21I	GWGCWC	4 cut(s)	335, 1108, 1233, 2311
Alw26I	GTCTC	2 cut(s)	193, 2219
AlwI	GGATC	1 cut(s)	2199
AlwNI	CAGNNNCTG	2 cut(s)	1940, 2099
Ama87I	CYCGRG	2 cut(s)	521, 532
Aor51HI	AGCGCT	1 cut(s)	836
AoxI	GGCC	9 cut(s)	307, 438, 503, 536, 764, 1683, 2125, 2299, 2415
ApeKI	GCWGC	6 cut(s)	150, 424, 1673, 2009, 2239, 2390
ApoI	RAATTY	3 cut(s)	510, 1067, 1657
AseI	ATTAAT	1 cut(s)	588
Asp700I	GAANNNNTTC	3 cut(s)	200, 1071, 1551
AspLEI	GCGC	5 cut(s)	116, 166, 837, 1463, 2053
AspS9I	GGNCC	7 cut(s)	439, 504, 525, 1264, 2126, 2299, 2416
AsuC2I	CCSGG	6 cut(s)	507, 522, 523, 657, 1478, 1494
AsuHPI	GGTGA	4 cut(s)	674, 1622, 1675, 2351
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	2 cut(s)	521, 532
AvaII	GGWCC	2 cut(s)	525, 1264
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	5 cut(s)	113, 163, 686, 977, 1247
BanII	GRGCYC	3 cut(s)	335, 971, 1233
BarI	GAAGNNNNNNTAC	2 cut(s)	1176, 1208
BauI	CACGAG	1 cut(s)	1254
BbrPI	CACGTG	1 cut(s)	1871
BbsI	GAAGAC	3 cut(s)	1130, 1696, 1772
Bbv12I	GWGCWC	4 cut(s)	335, 1108, 1233, 2311
BbvI	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
BccI	CCATC	4 cut(s)	614, 1337, 1402, 1406
BceAI	ACGGC	6 cut(s)	127, 151, 547, 769, 951, 2081
BciT130I	CCWGG	5 cut(s)	443, 599, 763, 963, 1143
BcnI	CCSGG	6 cut(s)	507, 522, 523, 657, 1478, 1494
BcoDI	GTCTC	2 cut(s)	193, 2219
BfaI	CTAG	3 cut(s)	123, 1052, 1215
BfmI	CTRYAG	2 cut(s)	79, 2136
BfoI	RGCGCY	3 cut(s)	117, 167, 838
BisI	GCNGC	9 cut(s)	151, 162, 345, 425, 539, 1674, 2010, 2240, 2391
BlsI	GCNGC	9 cut(s)	152, 163, 346, 426, 540, 1675, 2011, 2241, 2392
Bme18I	GGWCC	2 cut(s)	525, 1264
BmeRI	GACNNNNNGTC	1 cut(s)	318
BmeT110I	CYCGRG	2 cut(s)	521, 532
BmgBI	CACGTC	2 cut(s)	142, 2006
BmgT120I	GGNCC	7 cut(s)	439, 504, 525, 1264, 2126, 2299, 2416
BmrI	ACTGGG	2 cut(s)	112, 1650
BmsI	GCATC	2 cut(s)	786, 1312
BmuI	ACTGGG	2 cut(s)	112, 1650
BpiI	GAAGAC	3 cut(s)	1130, 1696, 1772
BpmI	CTGGAG	1 cut(s)	1917
Bpu10I	CCTNAGC	1 cut(s)	1041
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	3 cut(s)	629, 821, 2214
BpuMI	CCSGG	6 cut(s)	507, 522, 523, 657, 1478, 1494
BsaAI	YACGTR	3 cut(s)	1871, 1976, 2276
BsaHI	GRCGYC	5 cut(s)	114, 164, 314, 347, 782
BsaI	GGTCTC	1 cut(s)	193
BsaXI	ACNNNNNCTCC	4 cut(s)	806, 836, 1912, 1942
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	4 cut(s)	118, 690, 1645, 2050
Bse3DI	GCAATG	3 cut(s)	1372, 1614, 2426
BseBI	CCWGG	5 cut(s)	443, 599, 763, 963, 1143
BseGI	GGATG	3 cut(s)	1417, 1790, 2170
BseMI	GCAATG	3 cut(s)	1372, 1614, 2426
BseMII	CTCAG	3 cut(s)	941, 1395, 2091
BseNI	ACTGG	4 cut(s)	118, 690, 1645, 2050
BseRI	GAGGAG	7 cut(s)	231, 289, 378, 754, 1061, 1920, 2030
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
BseYI	CCCAGC	1 cut(s)	1178
BsgI	GTGCAG	3 cut(s)	455, 623, 2028
Bsh1236I	CGCG	1 cut(s)	1461
Bsh1285I	CGRYCG	1 cut(s)	1493
BshFI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
BshNI	GGYRCC	5 cut(s)	113, 163, 686, 977, 1247
BsiEI	CGRYCG	1 cut(s)	1493
BsiHKAI	GWGCWC	4 cut(s)	335, 1108, 1233, 2311
BsiHKCI	CYCGRG	2 cut(s)	521, 532
BslFI	GGGAC	6 cut(s)	120, 1159, 1277, 1849, 2190, 2211
BsmAI	GTCTC	2 cut(s)	193, 2219
BsmFI	GGGAC	6 cut(s)	120, 1159, 1277, 1849, 2190, 2211
BsnI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	2 cut(s)	521, 532
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	6 cut(s)	210, 335, 971, 1108, 1233, 2311
Bsp143I	GATC	4 cut(s)	1504, 1648, 1742, 2191
BspACI	CCGC	8 cut(s)	11, 161, 344, 493, 539, 843, 1354, 1433
BspANI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
BspCNI	CTCAG	3 cut(s)	940, 1396, 2092
BspFNI	CGCG	1 cut(s)	1461
BspHI	TCATGA	1 cut(s)	849
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	2199
BspQI	GCTCTTC	1 cut(s)	2337
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	5 cut(s)	113, 163, 686, 977, 1247
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	3 cut(s)	1372, 1614, 2426
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	4 cut(s)	118, 690, 1645, 2050
BssAI	RCCGGY	1 cut(s)	340
BssMI	GATC	4 cut(s)	1504, 1648, 1742, 2191
BssNI	GRCGYC	5 cut(s)	114, 164, 314, 347, 782
BssSI	CACGAG	1 cut(s)	1254
BssT1I	CCWWGG	3 cut(s)	1606, 1895, 2302
Bst2BI	CACGAG	1 cut(s)	1254
Bst2UI	CCWGG	5 cut(s)	443, 599, 763, 963, 1143
Bst4CI	ACNGT	2 cut(s)	232, 1296
Bst6I	CTCTTC	4 cut(s)	355, 1164, 1537, 2337
BstACI	GRCGYC	5 cut(s)	114, 164, 314, 347, 782
BstAPI	GCANNNNNTGC	1 cut(s)	2387
BstBAI	YACGTR	3 cut(s)	1871, 1976, 2276
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	6 cut(s)	286, 342, 438, 891, 2070, 2408
BstDEI	CTNAG	4 cut(s)	927, 1041, 1404, 2100
BstDSI	CCRYGG	3 cut(s)	109, 1117, 2073
BstENI	CCTNNNNNAGG	1 cut(s)	1146
BstF5I	GGATG	3 cut(s)	1417, 1790, 2170
BstFNI	CGCG	1 cut(s)	1461
BstH2I	RGCGCY	3 cut(s)	117, 167, 838
BstHHI	GCGC	5 cut(s)	116, 166, 837, 1463, 2053
BstKTI	GATC	4 cut(s)	1507, 1651, 1745, 2194
BstMAI	GTCTC	2 cut(s)	193, 2219
BstMBI	GATC	4 cut(s)	1504, 1648, 1742, 2191
BstMCI	CGRYCG	1 cut(s)	1493
BstNI	CCWGG	5 cut(s)	443, 599, 763, 963, 1143
BstNSI	RCATGY	1 cut(s)	1568
BstSFI	CTRYAG	2 cut(s)	79, 2136
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	1 cut(s)	1461
BstV1I	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
BstV2I	GAAGAC	3 cut(s)	1130, 1696, 1772
BstXI	CCANNNNNNTGG	2 cut(s)	449, 2080
BsuRI	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
BtgI	CCRYGG	3 cut(s)	109, 1117, 2073
BtgZI	GCGATG	1 cut(s)	875
BtrI	CACGTC	2 cut(s)	142, 2006
BtsCI	GGATG	3 cut(s)	1417, 1790, 2170
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 1401
Cac8I	GCNNGC	6 cut(s)	286, 342, 438, 891, 2070, 2408
CaiI	CAGNNNCTG	2 cut(s)	1940, 2099
CciI	TCATGA	1 cut(s)	849
CfoI	GCGC	5 cut(s)	116, 166, 837, 1463, 2053
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	7 cut(s)	439, 504, 525, 1264, 2126, 2299, 2416
Cfr9I	CCCGGG	1 cut(s)	521
CseI	GACGC	3 cut(s)	322, 336, 790
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	55, 1193, 2273
CspCI	CAANNNNNGTGG	2 cut(s)	1155, 1190
CviAII	CATG	6 cut(s)	629, 850, 1243, 1565, 1811, 1823
CviQI	GTAC	3 cut(s)	55, 1193, 2273
DdeI	CTNAG	4 cut(s)	927, 1041, 1404, 2100
DinI	GGCGCC	2 cut(s)	115, 165
DpnI	GATC	4 cut(s)	1506, 1650, 1744, 2193
DpnII	GATC	4 cut(s)	1504, 1648, 1742, 2191
DriI	GACNNNNNGTC	1 cut(s)	318
EaeI	YGGCCR	2 cut(s)	307, 1683
Eam1104I	CTCTTC	4 cut(s)	355, 1164, 1537, 2337
Eam1105I	GACNNNNNGTC	1 cut(s)	318
EarI	CTCTTC	4 cut(s)	355, 1164, 1537, 2337
EciI	GGCGGA	1 cut(s)	858
Ecl136II	GAGCTC	2 cut(s)	333, 1231
Eco130I	CCWWGG	3 cut(s)	1606, 1895, 2302
Eco24I	GRGCYC	3 cut(s)	335, 971, 1233
Eco31I	GGTCTC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	525, 1264
Eco47III	AGCGCT	1 cut(s)	836
Eco53kI	GAGCTC	2 cut(s)	333, 1231
Eco57I	CTGAAG	3 cut(s)	683, 1209, 1962
Eco72I	CACGTG	1 cut(s)	1871
Eco88I	CYCGRG	2 cut(s)	521, 532
EcoICRI	GAGCTC	2 cut(s)	333, 1231
EcoNI	CCTNNNNNAGG	1 cut(s)	1146
EcoO109I	RGGNCCY	3 cut(s)	1264, 2299, 2416
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	5 cut(s)	441, 597, 761, 961, 1141
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	3 cut(s)	1606, 1895, 2302
EcoT38I	GRGCYC	3 cut(s)	335, 971, 1233
EgeI	GGCGCC	2 cut(s)	115, 165
EheI	GGCGCC	2 cut(s)	115, 165
ErhI	CCWWGG	3 cut(s)	1606, 1895, 2302
FaeI	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
FaqI	GGGAC	6 cut(s)	120, 1159, 1277, 1849, 2190, 2211
FatI	CATG	6 cut(s)	628, 849, 1242, 1564, 1810, 1822
FblI	GTMKAC	1 cut(s)	1489
Fnu4HI	GCNGC	9 cut(s)	151, 162, 345, 425, 539, 1674, 2010, 2240, 2391
FokI	GGATG	3 cut(s)	1424, 1797, 2177
FriOI	GRGCYC	3 cut(s)	335, 971, 1233
Fsp4HI	GCNGC	9 cut(s)	151, 162, 345, 425, 539, 1674, 2010, 2240, 2391
FspBI	CTAG	3 cut(s)	123, 1052, 1215
GlaI	GCGC	5 cut(s)	115, 165, 836, 1462, 2052
GluI	GCNGC	9 cut(s)	151, 162, 345, 425, 539, 1674, 2010, 2240, 2391
GsaI	CCCAGC	1 cut(s)	1182
GsuI	CTGGAG	1 cut(s)	1917
HaeII	RGCGCY	3 cut(s)	117, 167, 838
HaeIII	GGCC	9 cut(s)	309, 440, 505, 538, 766, 1685, 2127, 2301, 2417
HgaI	GACGC	3 cut(s)	322, 336, 790
HhaI	GCGC	5 cut(s)	116, 166, 837, 1463, 2053
Hin1I	GRCGYC	5 cut(s)	114, 164, 314, 347, 782
Hin1II	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
Hin6I	GCGC	5 cut(s)	114, 164, 835, 1461, 2051
HinP1I	GCGC	5 cut(s)	114, 164, 835, 1461, 2051
HincII	GTYRAC	1 cut(s)	1490
HindII	GTYRAC	1 cut(s)	1490
HindIII	AAGCTT	2 cut(s)	695, 919
HphI	GGTGA	4 cut(s)	674, 1622, 1675, 2351
Hpy166II	GTNNAC	3 cut(s)	1490, 1603, 1979
Hpy188III	TCNNGA	9 cut(s)	137, 172, 226, 701, 778, 850, 1082, 1340, 2231
Hpy8I	GTNNAC	3 cut(s)	1490, 1603, 1979
Hpy99I	CGWCG	7 cut(s)	143, 340, 547, 550, 739, 760, 1491
HpyAV	CCTTC	7 cut(s)	169, 601, 1786, 2181, 2330, 2404, 2429
HpyCH4III	ACNGT	2 cut(s)	232, 1296
HpyCH4IV	ACGT	8 cut(s)	25, 141, 548, 1870, 1975, 1981, 2005, 2275
HpyF3I	CTNAG	4 cut(s)	927, 1041, 1404, 2100
HpySE526I	ACGT	8 cut(s)	25, 141, 548, 1870, 1975, 1981, 2005, 2275
Hsp92I	GRCGYC	5 cut(s)	114, 164, 314, 347, 782
Hsp92II	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
HspAI	GCGC	5 cut(s)	114, 164, 835, 1461, 2051
KasI	GGCGCC	2 cut(s)	113, 163
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	1504, 1648, 1742, 2191
LguI	GCTCTTC	1 cut(s)	2337
LmnI	GCTCC	7 cut(s)	276, 504, 652, 736, 842, 1048, 1448
Lsp1109I	GCAGC	6 cut(s)	137, 436, 1660, 2021, 2226, 2377
LweI	GCATC	2 cut(s)	786, 1312
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	3 cut(s)	123, 1052, 1215
MaeII	ACGT	8 cut(s)	25, 141, 548, 1870, 1975, 1981, 2005, 2275
MaeIII	GTNAC	5 cut(s)	74, 569, 1610, 1971, 1987
MalI	GATC	4 cut(s)	1506, 1650, 1744, 2193
MboI	GATC	4 cut(s)	1504, 1648, 1742, 2191
MhlI	GDGCHC	6 cut(s)	210, 335, 971, 1108, 1233, 2311
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	9 cut(s)	61, 510, 1059, 1067, 1551, 1657, 1755, 1880, 2234
MluNI	TGGCCA	1 cut(s)	309
Mly113I	GGCGCC	2 cut(s)	114, 164
MlyI	GAGTC	6 cut(s)	328, 334, 713, 1150, 2177, 2221
MmeI	TCCRAC	5 cut(s)	53, 552, 630, 687, 758
Mox20I	TGGCCA	1 cut(s)	309
MreI	CGCCGGCG	1 cut(s)	340
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	3 cut(s)	200, 1071, 1551
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
MslI	CAYNNNNRTG	2 cut(s)	1406, 2078
Msp20I	TGGCCA	1 cut(s)	309
MvaI	CCWGG	5 cut(s)	443, 599, 763, 963, 1143
MvnI	CGCG	1 cut(s)	1461
NaeI	GCCGGC	1 cut(s)	342
NarI	GGCGCC	2 cut(s)	114, 164
NciI	CCSGG	6 cut(s)	507, 522, 523, 657, 1478, 1494
NdeII	GATC	4 cut(s)	1504, 1648, 1742, 2191
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	6 cut(s)	632, 853, 1246, 1568, 1814, 1826
NmeAIII	GCCGAG	1 cut(s)	342
NmuCI	GTSAC	3 cut(s)	74, 569, 1610
NspI	RCATGY	1 cut(s)	1568
NspV	TTCGAA	1 cut(s)	401
PagI	TCATGA	1 cut(s)	849
PciSI	GCTCTTC	1 cut(s)	2337
PcsI	WCGNNNNNNNCGW	4 cut(s)	164, 320, 344, 1114
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	3 cut(s)	200, 1071, 1551
PfeI	GAWTC	6 cut(s)	263, 454, 846, 1078, 1390, 1547
PkrI	GCNGC	9 cut(s)	152, 163, 346, 426, 540, 1675, 2011, 2241, 2392
PleI	GAGTC	6 cut(s)	327, 333, 712, 1150, 2176, 2221
PluTI	GGCGCC	2 cut(s)	117, 167
PmaCI	CACGTG	1 cut(s)	1871
PmlI	CACGTG	1 cut(s)	1871
PpsI	GAGTC	6 cut(s)	327, 333, 712, 1150, 2176, 2221
Ppu21I	YACGTR	3 cut(s)	1871, 1976, 2276
PpuMI	RGGWCCY	1 cut(s)	1264
PshBI	ATTAAT	1 cut(s)	588
PsiI	TTATAA	2 cut(s)	554, 1202
Psp124BI	GAGCTC	2 cut(s)	335, 1233
Psp5II	RGGWCCY	1 cut(s)	1264
Psp6I	CCWGG	5 cut(s)	441, 597, 761, 961, 1141
PspCI	CACGTG	1 cut(s)	1871
PspFI	CCCAGC	1 cut(s)	1178
PspGI	CCWGG	5 cut(s)	441, 597, 761, 961, 1141
PspPI	GGNCC	7 cut(s)	439, 504, 525, 1264, 2126, 2299, 2416
PspPPI	RGGWCCY	1 cut(s)	1264
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	2 cut(s)	1940, 2099
RsaI	GTAC	3 cut(s)	56, 1194, 2274
RsaNI	GTAC	3 cut(s)	55, 1193, 2273
RseI	CAYNNNNRTG	2 cut(s)	1406, 2078
SacI	GAGCTC	2 cut(s)	335, 1233
SalI	GTCGAC	1 cut(s)	1488
SapI	GCTCTTC	1 cut(s)	2337
SaqAI	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
SatI	GCNGC	9 cut(s)	151, 162, 345, 425, 539, 1674, 2010, 2240, 2391
Sau3AI	GATC	4 cut(s)	1504, 1648, 1742, 2191
Sau96I	GGNCC	7 cut(s)	439, 504, 525, 1264, 2126, 2299, 2416
SchI	GAGTC	6 cut(s)	328, 334, 713, 1150, 2177, 2221
SduI	GDGCHC	6 cut(s)	210, 335, 971, 1108, 1233, 2311
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	786, 1312
SfcI	CTRYAG	2 cut(s)	79, 2136
SfoI	GGCGCC	2 cut(s)	115, 165
SfuI	TTCGAA	1 cut(s)	401
SgrAI	CRCCGGYG	1 cut(s)	340
SinI	GGWCC	2 cut(s)	525, 1264
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	1406, 2078
SmlI	CTYRAG	3 cut(s)	644, 800, 2229
SmoI	CTYRAG	3 cut(s)	644, 800, 2229
Sse9I	AATT	9 cut(s)	61, 510, 1059, 1067, 1551, 1657, 1755, 1880, 2234
SsiI	CCGC	8 cut(s)	11, 161, 344, 493, 539, 843, 1354, 1433
SspDI	GGCGCC	2 cut(s)	113, 163
SspI	AATATT	1 cut(s)	1305
SspMI	CTAG	3 cut(s)	123, 1052, 1215
SstI	GAGCTC	2 cut(s)	335, 1233
StyI	CCWWGG	3 cut(s)	1606, 1895, 2302
TaaI	ACNGT	2 cut(s)	232, 1296
TaiI	ACGT	8 cut(s)	28, 144, 551, 1873, 1978, 1984, 2008, 2278
TaqI	TCGA	2 cut(s)	401, 1489
TasI	AATT	9 cut(s)	61, 510, 1059, 1067, 1551, 1657, 1755, 1880, 2234
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	3 cut(s)	164, 347, 541
TfiI	GAWTC	6 cut(s)	263, 454, 846, 1078, 1390, 1547
Tru1I	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
Tru9I	TTAA	7 cut(s)	588, 639, 2112, 2208, 2360, 2400, 2446
TscAI	CASTG	2 cut(s)	83, 1408
TseFI	GTSAC	3 cut(s)	74, 569, 1610
TseI	GCWGC	6 cut(s)	150, 424, 1673, 2009, 2239, 2390
Tsp45I	GTSAC	3 cut(s)	74, 569, 1610
TspDTI	ATGAA	9 cut(s)	617, 695, 838, 866, 1683, 1714, 1827, 1951, 2386
TspGWI	ACGGA	3 cut(s)	62, 504, 2090
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	2 cut(s)	83, 1408
VpaK11BI	GGWCC	2 cut(s)	525, 1264
VspI	ATTAAT	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	1146
XapI	RAATTY	3 cut(s)	510, 1067, 1657
XceI	RCATGY	1 cut(s)	1568
XmaI	CCCGGG	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	1489
XmnI	GAANNNNTTC	3 cut(s)	200, 1071, 1551
XspI	CTAG	3 cut(s)	123, 1052, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.