Rmu_sc0004721.1_g000004

ATP-dependent zinc metalloprotease FTSH

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004721.1
Physical Location & Seq
Forward (+)
28380 .. 30058
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004721.1_g000004.1.cds

Sequence Viewer

Length: 1158 bp
atgtcatcggcggtggagtatttacgtccgacaatccacactcggttctgcttgtactccaattctaatctccgtcactgcagtaatggattgggcttcttcttcctccgcggcgcccagtctagggttttcagtcccgacgtgaaacgctgcgtttcggcggcgccgttcccgaatgttgcgagggtctccgagaaaaggttcgggcatgtgggaggttacaatggaggagggttcagggcggttagggtttttgcgaacgagccggagagcgattccggcgagaagagcgaggcaagcgaggggcagggcgtgaatggccagacgccgagtccgagtccgagctcgtcgccggcggcgtcgaatccgagaagaggagagaggcagaagaagaaggagagctggtggttttcgaaaggagggaaatggaagtggcagccgattgtgcaggcccaggagattgggattctgctgttgcagttggggattgttattgtcgttatgcggttgctccggcccggaattccgttgcccgggtcggaccccaggccgccgacgacgtttattagtgtgccttatagtgactttttgagtaagattaatactaaccaggtgcagaaggtggaggttgatggggttcatgttatgtttaagctcaagtcggagccgggtggtgaggtggagagtgaaatgaatggtgccagtaagtttcaggagtcggaggctttgctaagaagtgtggctccgacgaggagggtggtttatacgaccactaggccgactgatatcaagacgccgtatgagaagatgcttgagaatgaggtggagtttggatccccggataagcgctctggcggattcatgaactctgcgatgatagctttgttttacgttgctgtgcttgcagggcttctccaccggttccctgttagcttttctcagcatactgctggtcagattaggaatagaaaacctgggggctctggtggtgccaaaacatctgaaccctcggaagcaataacctttgctgatgttgctggtgttgacgaggctaaggaggagctagaggaaattgtggaatttcttcggaatccagacaggtatatacgacttggtgctcgtcctccccgtggtgttctgctggtgagctttaattag

Protein Analysis

385

Amino Acids

42.31

Weight (kDa)

9.49

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 113, 163, 698, 989
AccII CGCG 1 cut(s) 111
AciI CCGC 9 cut(s) 11, 109, 111, 161, 242, 356, 505, 551, 855
AclWI GGATC 2 cut(s) 828, 841
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 2 cut(s) 522, 1079
AcyI GRCGYC 5 cut(s) 114, 164, 326, 359, 794
AfaI GTAC 1 cut(s) 56
AfeI AGCGCT 1 cut(s) 848
AfiI CCNNNNNNNGG 6 cut(s) 123, 124, 198, 374, 533, 1130
AgeI ACCGGT 1 cut(s) 918
AhdI GACNNNNNGTC 1 cut(s) 330
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 4 cut(s) 453, 545, 609, 973
AluBI AGCT 7 cut(s) 345, 402, 655, 881, 933, 1063, 1149
AluI AGCT 7 cut(s) 345, 402, 655, 881, 933, 1063, 1149
Alw21I GWGCWC 2 cut(s) 347, 1120
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 2 cut(s) 828, 841
Ama87I CYCGRG 1 cut(s) 533
Aor51HI AGCGCT 1 cut(s) 848
AoxI GGCC 5 cut(s) 319, 450, 515, 548, 776
ApeKI GCWGC 2 cut(s) 150, 436
ApoI RAATTY 2 cut(s) 522, 1079
AseI ATTAAT 1 cut(s) 600
AsiGI ACCGGT 1 cut(s) 918
Asp700I GAANNNNTTC 2 cut(s) 200, 1083
AspLEI GCGC 3 cut(s) 116, 166, 849
AspS9I GGNCC 3 cut(s) 451, 516, 541
AsuC2I CCSGG 5 cut(s) 519, 534, 535, 669, 839
AsuHPI GGTGA 2 cut(s) 686, 1156
AsuII TTCGAA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 1 cut(s) 541
BalI TGGCCA 1 cut(s) 321
BamHI GGATCC 1 cut(s) 833
BanI GGYRCC 4 cut(s) 113, 163, 698, 989
BanII GRGCYC 2 cut(s) 347, 983
Bbv12I GWGCWC 2 cut(s) 347, 1120
BbvI GCAGC 2 cut(s) 137, 448
BccI CCATC 1 cut(s) 626
BceAI ACGGC 2 cut(s) 151, 781
BciT130I CCWGG 4 cut(s) 455, 547, 611, 975
BcnI CCSGG 5 cut(s) 519, 534, 535, 669, 839
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 3 cut(s) 123, 774, 1064
BfmI CTRYAG 1 cut(s) 79
BfoI RGCGCY 3 cut(s) 117, 167, 850
BisI GCNGC 6 cut(s) 112, 151, 162, 357, 437, 551
BlsI GCNGC 6 cut(s) 113, 152, 163, 358, 438, 552
Bme1390I CCNGG 9 cut(s) 455, 519, 534, 535, 547, 611, 669, 839, 975
Bme18I GGWCC 1 cut(s) 541
BmeRI GACNNNNNGTC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 533
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 451, 516, 541
BmiI GGNNCC 9 cut(s) 115, 165, 543, 666, 700, 744, 835, 923, 991
BmrFI CCNGG 9 cut(s) 455, 519, 534, 535, 547, 611, 669, 839, 975
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 798
BmuI ACTGGG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 1053
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 2 cut(s) 641, 833
BpuMI CCSGG 5 cut(s) 519, 534, 535, 669, 839
BsaHI GRCGYC 5 cut(s) 114, 164, 326, 359, 794
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 8 cut(s) 109, 453, 533, 545, 837, 974, 1008, 1129
BsaWI WCCGGW 1 cut(s) 918
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 124, 198, 374, 533, 1130
Bse118I RCCGGY 2 cut(s) 352, 918
Bse1I ACTGG 2 cut(s) 118, 702
BseBI CCWGG 4 cut(s) 455, 547, 611, 975
BseDI CCNNGG 8 cut(s) 109, 453, 533, 545, 837, 974, 1008, 1129
BseLI CCNNNNNNNGG 6 cut(s) 123, 124, 198, 374, 533, 1130
BseMII CTCAG 1 cut(s) 953
BseNI ACTGG 2 cut(s) 118, 702
BseRI GAGGAG 4 cut(s) 243, 390, 766, 1073
BseXI GCAGC 2 cut(s) 137, 448
BsgI GTGCAG 2 cut(s) 467, 635
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 5 cut(s) 321, 452, 517, 550, 778
BshNI GGYRCC 4 cut(s) 113, 163, 698, 989
BshTI ACCGGT 1 cut(s) 918
BsiHKAI GWGCWC 2 cut(s) 347, 1120
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 9 cut(s) 266, 279, 353, 514, 519, 534, 668, 839, 919
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 6 cut(s) 123, 124, 198, 374, 533, 1130
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 5 cut(s) 321, 452, 517, 550, 778
Bso31I GGTCTC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 3 cut(s) 347, 983, 1120
Bsp143I GATC 1 cut(s) 833
BspACI CCGC 9 cut(s) 11, 109, 111, 161, 242, 356, 505, 551, 855
BspANI GGCC 5 cut(s) 321, 452, 517, 550, 778
BspCNI CTCAG 1 cut(s) 952
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 9 cut(s) 115, 165, 543, 666, 700, 744, 835, 923, 991
BspMAI CTGCAG 1 cut(s) 83
BspPI GGATC 2 cut(s) 828, 841
BspQI GCTCTTC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 413
BspT107I GGYRCC 4 cut(s) 113, 163, 698, 989
BspTNI GGTCTC 1 cut(s) 193
BsrFI RCCGGY 2 cut(s) 352, 918
BsrI ACTGG 2 cut(s) 118, 702
BssAI RCCGGY 2 cut(s) 352, 918
BssECI CCNNGG 8 cut(s) 109, 453, 533, 545, 837, 974, 1008, 1129
BssMI GATC 1 cut(s) 833
BssNI GRCGYC 5 cut(s) 114, 164, 326, 359, 794
Bst2UI CCWGG 4 cut(s) 455, 547, 611, 975
Bst6I CTCTTC 2 cut(s) 281, 367
BstACI GRCGYC 5 cut(s) 114, 164, 326, 359, 794
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 4 cut(s) 298, 354, 450, 903
BstDEI CTNAG 3 cut(s) 731, 939, 1053
BstDSI CCRYGG 2 cut(s) 109, 1129
BstFNI CGCG 1 cut(s) 111
BstH2I RGCGCY 3 cut(s) 117, 167, 850
BstHHI GCGC 3 cut(s) 116, 166, 849
BstKTI GATC 1 cut(s) 836
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 833
BstMWI GCNNNNNNNGC 9 cut(s) 279, 288, 297, 318, 445, 878, 902, 907, 1034
BstNI CCWGG 4 cut(s) 455, 547, 611, 975
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 9 cut(s) 453, 517, 532, 533, 545, 609, 667, 837, 973
BstSFI CTRYAG 1 cut(s) 79
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 137, 448
BstX2I RGATCY 1 cut(s) 833
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 833
BsuRI GGCC 5 cut(s) 321, 452, 517, 550, 778
BtgI CCRYGG 2 cut(s) 109, 1129
BtgZI GCGATG 1 cut(s) 887
BtrI CACGTC 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 4 cut(s) 298, 354, 450, 903
CciI TCATGA 1 cut(s) 861
CfoI GCGC 3 cut(s) 116, 166, 849
Cfr10I RCCGGY 2 cut(s) 352, 918
Cfr13I GGNCC 3 cut(s) 451, 516, 541
Cfr42I CCGCGG 1 cut(s) 112
Cfr9I CCCGGG 1 cut(s) 533
CseI GACGC 3 cut(s) 334, 348, 802
CsiI ACCWGGT 1 cut(s) 609
Csp6I GTAC 1 cut(s) 55
CspAI ACCGGT 1 cut(s) 918
CviAII CATG 3 cut(s) 209, 641, 862
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 3 cut(s) 731, 939, 1053
DinI GGCGCC 2 cut(s) 115, 165
DpnI GATC 1 cut(s) 835
DpnII GATC 1 cut(s) 833
DriI GACNNNNNGTC 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 281, 367
Eam1105I GACNNNNNGTC 1 cut(s) 330
EarI CTCTTC 2 cut(s) 281, 367
EciI GGCGGA 1 cut(s) 870
Ecl136II GAGCTC 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 347, 983
Eco31I GGTCTC 1 cut(s) 193
Eco32I GATATC 1 cut(s) 787
Eco47I GGWCC 1 cut(s) 541
Eco47III AGCGCT 1 cut(s) 848
Eco53kI GAGCTC 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 522
EcoRII CCWGG 4 cut(s) 453, 545, 609, 973
EcoRV GATATC 1 cut(s) 787
EcoT38I GRGCYC 2 cut(s) 347, 983
EgeI GGCGCC 2 cut(s) 115, 165
EheI GGCGCC 2 cut(s) 115, 165
FaeI CATG 3 cut(s) 212, 644, 865
FaqI GGGAC 1 cut(s) 120
FatI CATG 3 cut(s) 208, 640, 861
Fnu4HI GCNGC 6 cut(s) 112, 151, 162, 357, 437, 551
FriOI GRGCYC 2 cut(s) 347, 983
Fsp4HI GCNGC 6 cut(s) 112, 151, 162, 357, 437, 551
FspBI CTAG 3 cut(s) 123, 774, 1064
GlaI GCGC 3 cut(s) 115, 165, 848
GluI GCNGC 6 cut(s) 112, 151, 162, 357, 437, 551
HaeII RGCGCY 3 cut(s) 117, 167, 850
HaeIII GGCC 5 cut(s) 321, 452, 517, 550, 778
HapII CCGG 9 cut(s) 266, 279, 353, 514, 519, 534, 668, 839, 919
HgaI GACGC 3 cut(s) 334, 348, 802
HhaI GCGC 3 cut(s) 116, 166, 849
Hin1I GRCGYC 5 cut(s) 114, 164, 326, 359, 794
Hin1II CATG 3 cut(s) 212, 644, 865
Hin6I GCGC 3 cut(s) 114, 164, 847
HinP1I GCGC 3 cut(s) 114, 164, 847
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 8 cut(s) 275, 331, 337, 364, 466, 716, 858, 1090
HpaII CCGG 9 cut(s) 266, 279, 353, 514, 519, 534, 668, 839, 919
HphI GGTGA 2 cut(s) 686, 1156
Hpy166II GTNNAC 1 cut(s) 1045
Hpy188III TCNNGA 6 cut(s) 137, 172, 713, 790, 862, 1094
Hpy8I GTNNAC 1 cut(s) 1045
Hpy99I CGWCG 6 cut(s) 143, 352, 364, 559, 562, 751
HpyAV CCTTC 2 cut(s) 388, 613
HpyCH4IV ACGT 4 cut(s) 25, 141, 560, 891
HpyCH4V TGCA 5 cut(s) 81, 448, 478, 616, 905
HpyF10VI GCNNNNNNNGC 9 cut(s) 279, 288, 297, 318, 445, 878, 902, 907, 1034
HpyF3I CTNAG 3 cut(s) 731, 939, 1053
HpySE526I ACGT 4 cut(s) 25, 141, 560, 891
Hsp92I GRCGYC 5 cut(s) 114, 164, 326, 359, 794
Hsp92II CATG 3 cut(s) 212, 644, 865
HspAI GCGC 3 cut(s) 114, 164, 847
KasI GGCGCC 2 cut(s) 113, 163
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 833
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 4 cut(s) 516, 664, 748, 1060
Lsp1109I GCAGC 2 cut(s) 137, 448
LweI GCATC 1 cut(s) 798
MabI ACCWGGT 1 cut(s) 609
MaeI CTAG 3 cut(s) 123, 774, 1064
MaeII ACGT 4 cut(s) 25, 141, 560, 891
MaeIII GTNAC 3 cut(s) 74, 218, 581
MalI GATC 1 cut(s) 835
MboI GATC 1 cut(s) 833
MboII GAAGA 8 cut(s) 91, 94, 298, 384, 400, 403, 817, 1076
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 3 cut(s) 347, 983, 1120
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 5 cut(s) 61, 522, 1071, 1079, 1153
MluNI TGGCCA 1 cut(s) 321
Mly113I GGCGCC 2 cut(s) 114, 164
MlyI GAGTC 3 cut(s) 340, 346, 725
MmeI TCCRAC 5 cut(s) 53, 519, 642, 699, 770
Mox20I TGGCCA 1 cut(s) 321
MreI CGCCGGCG 1 cut(s) 352
MroNI GCCGGC 1 cut(s) 352
MroXI GAANNNNTTC 2 cut(s) 200, 1083
MscI TGGCCA 1 cut(s) 321
MseI TTAA 3 cut(s) 600, 651, 1152
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 9 cut(s) 266, 279, 353, 514, 519, 534, 668, 839, 919
MspR9I CCNGG 9 cut(s) 455, 519, 534, 535, 547, 611, 669, 839, 975
MvaI CCWGG 4 cut(s) 455, 547, 611, 975
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 9 cut(s) 279, 288, 297, 318, 445, 878, 902, 907, 1034
NaeI GCCGGC 1 cut(s) 354
NarI GGCGCC 2 cut(s) 114, 164
NciI CCSGG 5 cut(s) 519, 534, 535, 669, 839
NdeII GATC 1 cut(s) 833
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 3 cut(s) 212, 644, 865
NlaIV GGNNCC 9 cut(s) 115, 165, 543, 666, 700, 744, 835, 923, 991
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 2 cut(s) 74, 581
NspI RCATGY 1 cut(s) 212
NspV TTCGAA 1 cut(s) 413
PagI TCATGA 1 cut(s) 861
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 4 cut(s) 164, 332, 356, 1126
PdiI GCCGGC 1 cut(s) 354
PdmI GAANNNNTTC 2 cut(s) 200, 1083
PfeI GAWTC 5 cut(s) 275, 364, 466, 858, 1090
PinAI ACCGGT 1 cut(s) 918
PkrI GCNGC 6 cut(s) 113, 152, 163, 358, 438, 552
PleI GAGTC 3 cut(s) 339, 345, 724
PluTI GGCGCC 2 cut(s) 117, 167
PpsI GAGTC 3 cut(s) 339, 345, 724
PshBI ATTAAT 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 347
Psp6I CCWGG 4 cut(s) 453, 545, 609, 973
PspGI CCWGG 4 cut(s) 453, 545, 609, 973
PspN4I GGNNCC 9 cut(s) 115, 165, 543, 666, 700, 744, 835, 923, 991
PspPI GGNCC 3 cut(s) 451, 516, 541
PstI CTGCAG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 833
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 347
SacII CCGCGG 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 3 cut(s) 600, 651, 1152
SatI GCNGC 6 cut(s) 112, 151, 162, 357, 437, 551
Sau3AI GATC 1 cut(s) 833
Sau96I GGNCC 3 cut(s) 451, 516, 541
SchI GAGTC 3 cut(s) 340, 346, 725
ScrFI CCNGG 9 cut(s) 455, 519, 534, 535, 547, 611, 669, 839, 975
SduI GDGCHC 3 cut(s) 347, 983, 1120
SexAI ACCWGGT 1 cut(s) 609
SfaNI GCATC 1 cut(s) 798
SfcI CTRYAG 1 cut(s) 79
SfoI GGCGCC 2 cut(s) 115, 165
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 413
SgrAI CRCCGGYG 1 cut(s) 352
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 1 cut(s) 541
SmaI CCCGGG 1 cut(s) 535
SmlI CTYRAG 2 cut(s) 656, 812
SmoI CTYRAG 2 cut(s) 656, 812
Sse9I AATT 5 cut(s) 61, 522, 1071, 1079, 1153
SsiI CCGC 9 cut(s) 11, 109, 111, 161, 242, 356, 505, 551, 855
SspDI GGCGCC 2 cut(s) 113, 163
SspMI CTAG 3 cut(s) 123, 774, 1064
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 9 cut(s) 453, 517, 532, 533, 545, 609, 667, 837, 973
TaiI ACGT 4 cut(s) 28, 144, 563, 894
TaqI TCGA 2 cut(s) 362, 413
TasI AATT 5 cut(s) 61, 522, 1071, 1079, 1153
TatI WGTACW 1 cut(s) 54
TauI GCSGC 4 cut(s) 114, 164, 359, 553
TfiI GAWTC 5 cut(s) 275, 364, 466, 858, 1090
Tru1I TTAA 3 cut(s) 600, 651, 1152
Tru9I TTAA 3 cut(s) 600, 651, 1152
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 2 cut(s) 74, 581
TseI GCWGC 2 cut(s) 150, 436
Tsp45I GTSAC 2 cut(s) 74, 581
TspDTI ATGAA 4 cut(s) 629, 707, 850, 878
TspGWI ACGGA 2 cut(s) 62, 516
TspMI CCCGGG 1 cut(s) 533
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 541
VspI ATTAAT 1 cut(s) 600
XapI RAATTY 2 cut(s) 522, 1079
XceI RCATGY 1 cut(s) 212
XmaI CCCGGG 1 cut(s) 533
XmnI GAANNNNTTC 2 cut(s) 200, 1083
XspI CTAG 3 cut(s) 123, 774, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.