ATP-dependent zinc metalloprotease FTSH
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47060 AT5G58870 |
| fragaria_vesca | FvH4_3g38190 FvH4_3g38190 FvH4_3g38190 |
| malus_domestica | MD03G1074100.v1.1 MD11G1080400.v1.1 |
| prunus_persica | Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 |
| pyrus_communis | pycom03g05990 pycom11g06770 |
| rosa_chinensis | RchiOBHm_Chr5g0068621 |
| rosa_laevigata | RLG00000035985 |
| rosa_multiflora | Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00012250 |
| rosa_rugosa | Rorug05G0392000 |
| rosa_samantha | Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200 |
| rosa_wichuraiana | Rw5G041980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1208 |
| AccB1I | GGYRCC | 2 cut(s) | 787, 1297 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 88 |
| AccI | GTMKAC | 1 cut(s) | 1495 |
| AccII | CGCG | 3 cut(s) | 173, 1263, 2013 |
| AciI | CCGC | 7 cut(s) | 79, 370, 424, 499, 841, 864, 1439 |
| AclWI | GGATC | 2 cut(s) | 1278, 2211 |
| AcoI | YGGCCR | 1 cut(s) | 1689 |
| AcsI | RAATTY | 7 cut(s) | 52, 58, 516, 1073, 1355, 1663, 2024 |
| AcuI | CTGAAG | 1 cut(s) | 1215 |
| AcvI | CACGTG | 2 cut(s) | 1283, 1877 |
| AcyI | GRCGYC | 2 cut(s) | 158, 788 |
| AfaI | GTAC | 3 cut(s) | 179, 572, 1101 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 88, 414, 527, 840, 1124, 1154, 1907 |
| AflIII | ACRYGT | 1 cut(s) | 1876 |
| AgeI | ACCGGT | 1 cut(s) | 912 |
| AgsI | TTSAA | 9 cut(s) | 121, 443, 646, 652, 707, 859, 1396, 1736, 2231 |
| AjnI | CCWGG | 7 cut(s) | 123, 511, 526, 603, 1147, 1498, 1864 |
| Alw21I | GWGCWC | 5 cut(s) | 353, 1114, 2059, 2191, 2323 |
| Alw26I | GTCTC | 6 cut(s) | 127, 224, 2120, 2318, 2433, 2457 |
| Alw44I | GTGCAC | 1 cut(s) | 2055 |
| AlwI | GGATC | 2 cut(s) | 1278, 2211 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 222, 2105 |
| AoxI | GGCC | 4 cut(s) | 316, 770, 1689, 2131 |
| ApaLI | GTGCAC | 1 cut(s) | 2055 |
| ApeKI | GCWGC | 3 cut(s) | 430, 1679, 2015 |
| ApoI | RAATTY | 7 cut(s) | 52, 58, 516, 1073, 1355, 1663, 2024 |
| AseI | ATTAAT | 1 cut(s) | 594 |
| AsiGI | ACCGGT | 1 cut(s) | 912 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1077, 1557 |
| AspLEI | GCGC | 2 cut(s) | 790, 2015 |
| AspS9I | GGNCC | 3 cut(s) | 316, 405, 2132 |
| AsuHPI | GGTGA | 5 cut(s) | 337, 677, 1628, 1681, 2363 |
| AsuII | TTCGAA | 3 cut(s) | 56, 146, 362 |
| AvaII | GGWCC | 1 cut(s) | 405 |
| BaeGI | GKGCMC | 2 cut(s) | 1203, 2059 |
| BanI | GGYRCC | 2 cut(s) | 787, 1297 |
| BanII | GRGCYC | 1 cut(s) | 353 |
| BauI | CACGAG | 1 cut(s) | 1122 |
| BbrPI | CACGTG | 2 cut(s) | 1283, 1877 |
| BbsI | GAAGAC | 4 cut(s) | 1136, 1702, 1778, 1850 |
| Bbv12I | GWGCWC | 5 cut(s) | 353, 1114, 2059, 2191, 2323 |
| BbvI | GCAGC | 3 cut(s) | 442, 1666, 2027 |
| BccI | CCATC | 4 cut(s) | 620, 1343, 1408, 1412 |
| BceAI | ACGGC | 3 cut(s) | 553, 775, 1829 |
| BciT130I | CCWGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| BcoDI | GTCTC | 6 cut(s) | 127, 224, 2120, 2318, 2433, 2457 |
| BfaI | CTAG | 4 cut(s) | 111, 1058, 1221, 2298 |
| BfmI | CTRYAG | 4 cut(s) | 1332, 1803, 2142, 2360 |
| BfoI | RGCGCY | 1 cut(s) | 791 |
| BglII | AGATCT | 1 cut(s) | 1654 |
| BisI | GCNGC | 4 cut(s) | 79, 431, 1680, 2016 |
| BlsI | GCNGC | 4 cut(s) | 80, 432, 1681, 2017 |
| Bme1390I | CCNGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| Bme18I | GGWCC | 1 cut(s) | 405 |
| BmgT120I | GGNCC | 3 cut(s) | 316, 405, 2132 |
| BmiI | GGNNCC | 6 cut(s) | 537, 738, 789, 917, 959, 1299 |
| BmrFI | CCNGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| BmrI | ACTGGG | 1 cut(s) | 1656 |
| BmsI | GCATC | 4 cut(s) | 792, 1001, 1318, 2221 |
| BmuI | ACTGGG | 1 cut(s) | 1656 |
| BpiI | GAAGAC | 4 cut(s) | 1136, 1702, 1778, 1850 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 721, 753, 1116, 1148 |
| BpmI | CTGGAG | 1 cut(s) | 990 |
| Bpu14I | TTCGAA | 3 cut(s) | 56, 146, 362 |
| BpuEI | CTTGAG | 1 cut(s) | 827 |
| BsaAI | YACGTR | 3 cut(s) | 1283, 1877, 1982 |
| BsaBI | GATNNNNATC | 1 cut(s) | 458 |
| BsaHI | GRCGYC | 2 cut(s) | 158, 788 |
| BsaI | GGTCTC | 2 cut(s) | 2120, 2318 |
| BsaWI | WCCGGW | 1 cut(s) | 912 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 812, 842, 1286, 1316, 1918, 1948 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 88, 414, 527, 840, 1124, 1154, 1907 |
| Bse118I | RCCGGY | 3 cut(s) | 154, 355, 912 |
| Bse1I | ACTGG | 3 cut(s) | 1642, 1651, 2476 |
| Bse3DI | GCAATG | 4 cut(s) | 873, 1378, 1620, 2462 |
| Bse8I | GATNNNNATC | 1 cut(s) | 458 |
| BseBI | CCWGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| BseGI | GGATG | 4 cut(s) | 1354, 1423, 2176, 2272 |
| BseJI | GATNNNNATC | 1 cut(s) | 458 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 88, 414, 527, 840, 1124, 1154, 1907 |
| BseMI | GCAATG | 4 cut(s) | 873, 1378, 1620, 2462 |
| BseMII | CTCAG | 6 cut(s) | 520, 648, 947, 1401, 1482, 2097 |
| BseNI | ACTGG | 3 cut(s) | 1642, 1651, 2476 |
| BseRI | GAGGAG | 3 cut(s) | 1067, 1140, 1926 |
| BseSI | GKGCMC | 2 cut(s) | 1203, 2059 |
| BseXI | GCAGC | 3 cut(s) | 442, 1666, 2027 |
| BseYI | CCCAGC | 2 cut(s) | 1184, 1483 |
| BsgI | GTGCAG | 2 cut(s) | 629, 893 |
| Bsh1236I | CGCG | 3 cut(s) | 173, 1263, 2013 |
| Bsh1285I | CGRYCG | 1 cut(s) | 12 |
| BshFI | GGCC | 4 cut(s) | 318, 772, 1691, 2133 |
| BshNI | GGYRCC | 2 cut(s) | 787, 1297 |
| BshTI | ACCGGT | 1 cut(s) | 912 |
| BsiEI | CGRYCG | 1 cut(s) | 12 |
| BsiHKAI | GWGCWC | 5 cut(s) | 353, 1114, 2059, 2191, 2323 |
| BsiSI | CCGG | 4 cut(s) | 155, 356, 913, 1692 |
| BslFI | GGGAC | 2 cut(s) | 1165, 1855 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 88, 414, 527, 840, 1124, 1154, 1907 |
| BsmAI | GTCTC | 6 cut(s) | 127, 224, 2120, 2318, 2433, 2457 |
| BsmBI | CGTCTC | 1 cut(s) | 127 |
| BsmFI | GGGAC | 2 cut(s) | 1165, 1855 |
| BsnI | GGCC | 4 cut(s) | 318, 772, 1691, 2133 |
| Bso31I | GGTCTC | 2 cut(s) | 2120, 2318 |
| Bsp119I | TTCGAA | 3 cut(s) | 56, 146, 362 |
| Bsp1286I | GDGCHC | 6 cut(s) | 353, 1114, 1203, 2059, 2191, 2323 |
| Bsp143I | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| Bsp19I | CCATGG | 2 cut(s) | 82, 232 |
| BspACI | CCGC | 7 cut(s) | 79, 370, 424, 499, 841, 864, 1439 |
| BspANI | GGCC | 4 cut(s) | 318, 772, 1691, 2133 |
| BspCNI | CTCAG | 6 cut(s) | 519, 649, 946, 1402, 1481, 2098 |
| BspFNI | CGCG | 3 cut(s) | 173, 1263, 2013 |
| BspLI | GGNNCC | 6 cut(s) | 537, 738, 789, 917, 959, 1299 |
| BspPI | GGATC | 2 cut(s) | 1278, 2211 |
| BspQI | GCTCTTC | 3 cut(s) | 221, 287, 2349 |
| BspT104I | TTCGAA | 3 cut(s) | 56, 146, 362 |
| BspT107I | GGYRCC | 2 cut(s) | 787, 1297 |
| BspTNI | GGTCTC | 2 cut(s) | 2120, 2318 |
| BsrDI | GCAATG | 4 cut(s) | 873, 1378, 1620, 2462 |
| BsrFI | RCCGGY | 3 cut(s) | 154, 355, 912 |
| BsrI | ACTGG | 3 cut(s) | 1642, 1651, 2476 |
| BssAI | RCCGGY | 3 cut(s) | 154, 355, 912 |
| BssMI | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| BssNI | GRCGYC | 2 cut(s) | 158, 788 |
| BssSI | CACGAG | 1 cut(s) | 1122 |
| BssT1I | CCWWGG | 7 cut(s) | 82, 232, 319, 1173, 1450, 1612, 2192 |
| Bst2BI | CACGAG | 1 cut(s) | 1122 |
| Bst2UI | CCWGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| Bst4CI | ACNGT | 5 cut(s) | 38, 250, 575, 1302, 1905 |
| Bst6I | CTCTTC | 7 cut(s) | 221, 287, 740, 1170, 1543, 2349, 2460 |
| BstACI | GRCGYC | 2 cut(s) | 158, 788 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1658 |
| BstBAI | YACGTR | 3 cut(s) | 1283, 1877, 1982 |
| BstBI | TTCGAA | 3 cut(s) | 56, 146, 362 |
| BstDEI | CTNAG | 7 cut(s) | 506, 657, 933, 1410, 1468, 1477, 2106 |
| BstDSI | CCRYGG | 3 cut(s) | 82, 232, 1901 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1122, 1152 |
| BstF5I | GGATG | 4 cut(s) | 1354, 1423, 2176, 2272 |
| BstFNI | CGCG | 3 cut(s) | 173, 1263, 2013 |
| BstH2I | RGCGCY | 1 cut(s) | 791 |
| BstHHI | GCGC | 2 cut(s) | 790, 2015 |
| BstKTI | GATC | 6 cut(s) | 1273, 1513, 1657, 1751, 2206, 2224 |
| BstMAI | GTCTC | 6 cut(s) | 127, 224, 2120, 2318, 2433, 2457 |
| BstMBI | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| BstMCI | CGRYCG | 1 cut(s) | 12 |
| BstNI | CCWGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| BstNSI | RCATGY | 1 cut(s) | 1574 |
| BstSCI | CCNGG | 7 cut(s) | 123, 511, 526, 603, 1147, 1498, 1864 |
| BstSFI | CTRYAG | 4 cut(s) | 1332, 1803, 2142, 2360 |
| BstSLI | GKGCMC | 2 cut(s) | 1203, 2059 |
| BstUI | CGCG | 3 cut(s) | 173, 1263, 2013 |
| BstV1I | GCAGC | 3 cut(s) | 442, 1666, 2027 |
| BstV2I | GAAGAC | 4 cut(s) | 1136, 1702, 1778, 1850 |
| BstX2I | RGATCY | 2 cut(s) | 1270, 1654 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 455, 1180 |
| BstYI | RGATCY | 2 cut(s) | 1270, 1654 |
| BsuRI | GGCC | 4 cut(s) | 318, 772, 1691, 2133 |
| BtgI | CCRYGG | 3 cut(s) | 82, 232, 1901 |
| BtsCI | GGATG | 4 cut(s) | 1354, 1423, 2176, 2272 |
| BtsI | GCAGTG | 2 cut(s) | 73, 988 |
| BtsIMutI | CAGTG | 4 cut(s) | 73, 580, 988, 1407 |
| CaiI | CAGNNNCTG | 2 cut(s) | 222, 2105 |
| CfoI | GCGC | 2 cut(s) | 790, 2015 |
| Cfr10I | RCCGGY | 3 cut(s) | 154, 355, 912 |
| Cfr13I | GGNCC | 3 cut(s) | 316, 405, 2132 |
| CseI | GACGC | 2 cut(s) | 147, 2019 |
| CsiI | ACCWGGT | 1 cut(s) | 603 |
| Csp6I | GTAC | 3 cut(s) | 178, 571, 1100 |
| CspAI | ACCGGT | 1 cut(s) | 912 |
| CviAII | CATG | 8 cut(s) | 83, 233, 635, 1249, 1571, 1817, 1829, 2086 |
| CviQI | GTAC | 3 cut(s) | 178, 571, 1100 |
| DdeI | CTNAG | 7 cut(s) | 506, 657, 933, 1410, 1468, 1477, 2106 |
| DinI | GGCGCC | 1 cut(s) | 789 |
| DpnI | GATC | 6 cut(s) | 1272, 1512, 1656, 1750, 2205, 2223 |
| DpnII | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| EaeI | YGGCCR | 1 cut(s) | 1689 |
| Eam1104I | CTCTTC | 7 cut(s) | 221, 287, 740, 1170, 1543, 2349, 2460 |
| EarI | CTCTTC | 7 cut(s) | 221, 287, 740, 1170, 1543, 2349, 2460 |
| EciI | GGCGGA | 1 cut(s) | 385 |
| Ecl136II | GAGCTC | 1 cut(s) | 351 |
| Eco130I | CCWWGG | 7 cut(s) | 82, 232, 319, 1173, 1450, 1612, 2192 |
| Eco24I | GRGCYC | 1 cut(s) | 353 |
| Eco31I | GGTCTC | 2 cut(s) | 2120, 2318 |
| Eco47I | GGWCC | 1 cut(s) | 405 |
| Eco53kI | GAGCTC | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 1 cut(s) | 1215 |
| Eco72I | CACGTG | 2 cut(s) | 1283, 1877 |
| EcoICRI | GAGCTC | 1 cut(s) | 351 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1122, 1152 |
| EcoRI | GAATTC | 3 cut(s) | 58, 516, 1073 |
| EcoRII | CCWGG | 7 cut(s) | 123, 511, 526, 603, 1147, 1498, 1864 |
| EcoT14I | CCWWGG | 7 cut(s) | 82, 232, 319, 1173, 1450, 1612, 2192 |
| EcoT38I | GRGCYC | 1 cut(s) | 353 |
| EgeI | GGCGCC | 1 cut(s) | 789 |
| EheI | GGCGCC | 1 cut(s) | 789 |
| ErhI | CCWWGG | 7 cut(s) | 82, 232, 319, 1173, 1450, 1612, 2192 |
| Esp3I | CGTCTC | 1 cut(s) | 127 |
| FaeI | CATG | 8 cut(s) | 86, 236, 638, 1252, 1574, 1820, 1832, 2089 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2439, 2471 |
| FaqI | GGGAC | 2 cut(s) | 1165, 1855 |
| FatI | CATG | 8 cut(s) | 82, 232, 634, 1248, 1570, 1816, 1828, 2085 |
| FblI | GTMKAC | 1 cut(s) | 1495 |
| Fnu4HI | GCNGC | 4 cut(s) | 79, 431, 1680, 2016 |
| FokI | GGATG | 4 cut(s) | 1361, 1430, 2183, 2279 |
| FriOI | GRGCYC | 1 cut(s) | 353 |
| Fsp4HI | GCNGC | 4 cut(s) | 79, 431, 1680, 2016 |
| FspBI | CTAG | 4 cut(s) | 111, 1058, 1221, 2298 |
| GlaI | GCGC | 2 cut(s) | 789, 2014 |
| GluI | GCNGC | 4 cut(s) | 79, 431, 1680, 2016 |
| GsaI | CCCAGC | 2 cut(s) | 1188, 1487 |
| GsuI | CTGGAG | 1 cut(s) | 990 |
| HaeII | RGCGCY | 1 cut(s) | 791 |
| HaeIII | GGCC | 4 cut(s) | 318, 772, 1691, 2133 |
| HapII | CCGG | 4 cut(s) | 155, 356, 913, 1692 |
| HgaI | GACGC | 2 cut(s) | 147, 2019 |
| HhaI | GCGC | 2 cut(s) | 790, 2015 |
| Hin1I | GRCGYC | 2 cut(s) | 158, 788 |
| Hin1II | CATG | 8 cut(s) | 86, 236, 638, 1252, 1574, 1820, 1832, 2089 |
| Hin6I | GCGC | 2 cut(s) | 788, 2013 |
| HinP1I | GCGC | 2 cut(s) | 788, 2013 |
| HincII | GTYRAC | 1 cut(s) | 1496 |
| HindII | GTYRAC | 1 cut(s) | 1496 |
| HindIII | AAGCTT | 1 cut(s) | 925 |
| HpaII | CCGG | 4 cut(s) | 155, 356, 913, 1692 |
| HphI | GGTGA | 5 cut(s) | 337, 677, 1628, 1681, 2363 |
| Hpy166II | GTNNAC | 6 cut(s) | 328, 757, 1496, 1609, 1985, 2057 |
| Hpy188III | TCNNGA | 9 cut(s) | 223, 244, 272, 707, 969, 1088, 1346, 1908, 2327 |
| Hpy8I | GTNNAC | 6 cut(s) | 328, 757, 1496, 1609, 1985, 2057 |
| Hpy99I | CGWCG | 8 cut(s) | 10, 553, 556, 745, 766, 769, 1497, 2076 |
| HpyAV | CCTTC | 6 cut(s) | 298, 607, 1088, 1792, 2193, 2342 |
| HpyCH4III | ACNGT | 5 cut(s) | 38, 250, 575, 1302, 1905 |
| HpyCH4IV | ACGT | 7 cut(s) | 22, 554, 885, 1282, 1876, 1981, 1987 |
| HpyF3I | CTNAG | 7 cut(s) | 506, 657, 933, 1410, 1468, 1477, 2106 |
| HpySE526I | ACGT | 7 cut(s) | 22, 554, 885, 1282, 1876, 1981, 1987 |
| Hsp92I | GRCGYC | 2 cut(s) | 158, 788 |
| Hsp92II | CATG | 8 cut(s) | 86, 236, 638, 1252, 1574, 1820, 1832, 2089 |
| HspAI | GCGC | 2 cut(s) | 788, 2013 |
| KasI | GGCGCC | 1 cut(s) | 787 |
| KroI | GCCGGC | 2 cut(s) | 154, 355 |
| KroNI | GCCGGC | 2 cut(s) | 156, 357 |
| Kzo9I | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| LguI | GCTCTTC | 3 cut(s) | 221, 287, 2349 |
| LmnI | GCTCC | 5 cut(s) | 535, 742, 1054, 1454, 2194 |
| Lsp1109I | GCAGC | 3 cut(s) | 442, 1666, 2027 |
| LweI | GCATC | 4 cut(s) | 792, 1001, 1318, 2221 |
| MabI | ACCWGGT | 1 cut(s) | 603 |
| MaeI | CTAG | 4 cut(s) | 111, 1058, 1221, 2298 |
| MaeII | ACGT | 7 cut(s) | 22, 554, 885, 1282, 1876, 1981, 1987 |
| MaeIII | GTNAC | 3 cut(s) | 599, 1616, 1977 |
| MalI | GATC | 6 cut(s) | 1272, 1512, 1656, 1750, 2205, 2223 |
| MboI | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| MfeI | CAATTG | 2 cut(s) | 473, 1400 |
| MflI | RGATCY | 2 cut(s) | 1270, 1654 |
| MhlI | GDGCHC | 6 cut(s) | 353, 1114, 1203, 2059, 2191, 2323 |
| Mly113I | GGCGCC | 1 cut(s) | 788 |
| MlyI | GAGTC | 5 cut(s) | 538, 1156, 2183, 2435, 2459 |
| MmeI | TCCRAC | 5 cut(s) | 50, 513, 572, 764, 1964 |
| MreI | CGCCGGCG | 1 cut(s) | 154 |
| MroNI | GCCGGC | 2 cut(s) | 154, 355 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1077, 1557 |
| MseI | TTAA | 4 cut(s) | 50, 594, 2241, 2482 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1412 |
| MspA1I | CMGCKG | 1 cut(s) | 944 |
| MspI | CCGG | 4 cut(s) | 155, 356, 913, 1692 |
| MspR9I | CCNGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| MunI | CAATTG | 2 cut(s) | 473, 1400 |
| MvaI | CCWGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| MvnI | CGCG | 3 cut(s) | 173, 1263, 2013 |
| NaeI | GCCGGC | 2 cut(s) | 156, 357 |
| NarI | GGCGCC | 1 cut(s) | 788 |
| NcoI | CCATGG | 2 cut(s) | 82, 232 |
| NdeII | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| NgoMIV | GCCGGC | 2 cut(s) | 154, 355 |
| NlaIII | CATG | 8 cut(s) | 86, 236, 638, 1252, 1574, 1820, 1832, 2089 |
| NlaIV | GGNNCC | 6 cut(s) | 537, 738, 789, 917, 959, 1299 |
| NmeAIII | GCCGAG | 1 cut(s) | 564 |
| NmuCI | GTSAC | 1 cut(s) | 1616 |
| NspI | RCATGY | 1 cut(s) | 1574 |
| NspV | TTCGAA | 3 cut(s) | 56, 146, 362 |
| PciSI | GCTCTTC | 3 cut(s) | 221, 287, 2349 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 359, 1120 |
| PdiI | GCCGGC | 2 cut(s) | 156, 357 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1077, 1557 |
| PfeI | GAWTC | 7 cut(s) | 281, 364, 459, 710, 1084, 1396, 1558 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 88 |
| PfoI | TCCNGGA | 1 cut(s) | 1864 |
| PinAI | ACCGGT | 1 cut(s) | 912 |
| PkrI | GCNGC | 4 cut(s) | 80, 432, 1681, 2017 |
| PleI | GAGTC | 5 cut(s) | 538, 1156, 2182, 2434, 2458 |
| PluTI | GGCGCC | 1 cut(s) | 791 |
| PmaCI | CACGTG | 2 cut(s) | 1283, 1877 |
| PmlI | CACGTG | 2 cut(s) | 1283, 1877 |
| PpsI | GAGTC | 5 cut(s) | 538, 1156, 2182, 2434, 2458 |
| Ppu21I | YACGTR | 3 cut(s) | 1283, 1877, 1982 |
| PshBI | ATTAAT | 1 cut(s) | 594 |
| PsiI | TTATAA | 1 cut(s) | 1208 |
| Psp124BI | GAGCTC | 1 cut(s) | 353 |
| Psp6I | CCWGG | 7 cut(s) | 123, 511, 526, 603, 1147, 1498, 1864 |
| PspCI | CACGTG | 2 cut(s) | 1283, 1877 |
| PspFI | CCCAGC | 2 cut(s) | 1184, 1483 |
| PspGI | CCWGG | 7 cut(s) | 123, 511, 526, 603, 1147, 1498, 1864 |
| PspN4I | GGNNCC | 6 cut(s) | 537, 738, 789, 917, 959, 1299 |
| PspPI | GGNCC | 3 cut(s) | 316, 405, 2132 |
| PstNI | CAGNNNCTG | 2 cut(s) | 222, 2105 |
| PsuI | RGATCY | 2 cut(s) | 1270, 1654 |
| PvuII | CAGCTG | 1 cut(s) | 944 |
| RsaI | GTAC | 3 cut(s) | 179, 572, 1101 |
| RsaNI | GTAC | 3 cut(s) | 178, 571, 1100 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1412 |
| SacI | GAGCTC | 1 cut(s) | 353 |
| SalI | GTCGAC | 1 cut(s) | 1494 |
| SapI | GCTCTTC | 3 cut(s) | 221, 287, 2349 |
| SaqAI | TTAA | 4 cut(s) | 50, 594, 2241, 2482 |
| SatI | GCNGC | 4 cut(s) | 79, 431, 1680, 2016 |
| Sau3AI | GATC | 6 cut(s) | 1270, 1510, 1654, 1748, 2203, 2221 |
| Sau96I | GGNCC | 3 cut(s) | 316, 405, 2132 |
| SchI | GAGTC | 5 cut(s) | 538, 1156, 2183, 2435, 2459 |
| ScrFI | CCNGG | 7 cut(s) | 125, 513, 528, 605, 1149, 1500, 1866 |
| SduI | GDGCHC | 6 cut(s) | 353, 1114, 1203, 2059, 2191, 2323 |
| SexAI | ACCWGGT | 1 cut(s) | 603 |
| SfaNI | GCATC | 4 cut(s) | 792, 1001, 1318, 2221 |
| SfcI | CTRYAG | 4 cut(s) | 1332, 1803, 2142, 2360 |
| SfoI | GGCGCC | 1 cut(s) | 789 |
| SfuI | TTCGAA | 3 cut(s) | 56, 146, 362 |
| SgrAI | CRCCGGYG | 1 cut(s) | 154 |
| SinI | GGWCC | 1 cut(s) | 405 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1412 |
| SmlI | CTYRAG | 1 cut(s) | 806 |
| SmoI | CTYRAG | 1 cut(s) | 806 |
| SsiI | CCGC | 7 cut(s) | 79, 370, 424, 499, 841, 864, 1439 |
| SspDI | GGCGCC | 1 cut(s) | 787 |
| SspI | AATATT | 1 cut(s) | 1311 |
| SspMI | CTAG | 4 cut(s) | 111, 1058, 1221, 2298 |
| SstI | GAGCTC | 1 cut(s) | 353 |
| StyD4I | CCNGG | 7 cut(s) | 123, 511, 526, 603, 1147, 1498, 1864 |
| StyI | CCWWGG | 7 cut(s) | 82, 232, 319, 1173, 1450, 1612, 2192 |
| TaaI | ACNGT | 5 cut(s) | 38, 250, 575, 1302, 1905 |
| TaiI | ACGT | 7 cut(s) | 25, 557, 888, 1285, 1879, 1984, 1990 |
| TaqI | TCGA | 6 cut(s) | 12, 56, 146, 347, 362, 1495 |
| TauI | GCSGC | 1 cut(s) | 81 |
| TfiI | GAWTC | 7 cut(s) | 281, 364, 459, 710, 1084, 1396, 1558 |
| Tru1I | TTAA | 4 cut(s) | 50, 594, 2241, 2482 |
| Tru9I | TTAA | 4 cut(s) | 50, 594, 2241, 2482 |
| TscAI | CASTG | 4 cut(s) | 80, 580, 988, 1414 |
| TseFI | GTSAC | 1 cut(s) | 1616 |
| TseI | GCWGC | 3 cut(s) | 430, 1679, 2015 |
| Tsp45I | GTSAC | 1 cut(s) | 1616 |
| TspDTI | ATGAA | 7 cut(s) | 623, 1303, 1689, 1720, 1833, 1957, 2398 |
| TspGWI | ACGGA | 2 cut(s) | 195, 1349 |
| TspRI | CASTG | 4 cut(s) | 80, 580, 988, 1414 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 88 |
| VneI | GTGCAC | 1 cut(s) | 2055 |
| VpaK11BI | GGWCC | 1 cut(s) | 405 |
| VspI | ATTAAT | 1 cut(s) | 594 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1122, 1152 |
| XapI | RAATTY | 7 cut(s) | 52, 58, 516, 1073, 1355, 1663, 2024 |
| XceI | RCATGY | 1 cut(s) | 1574 |
| XmiI | GTMKAC | 1 cut(s) | 1495 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1077, 1557 |
| XspI | CTAG | 4 cut(s) | 111, 1058, 1221, 2298 |