Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007746

Physical Location & Seq

Genomic Coordinates Forward (+)

73619651 .. 73624094

Gene Structure 4444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2277 bp

ATGTCATCGGCGGTGGAGTATTTACGTCCGACAATCCACACTCGGTTCTGCTTGTACTCCAATTCTAATCTCCGTCACTGCAGTAATGGATTGGGCTTCTTCTTCCTCCGCGGCGCCCAGTCTAGGGTTTTCAGTCCCGACGTGAAACGCTGCGTTTCGGCGGCGCCGTTCCCGAAGGTTGCGAGGGTCTCCGAGAAAAGGTTCGGGCATGTGGGAGGTTACAATGGAGGAGGGTTCAGGACGGTTAGGGTTTTGGCGAACGAGCCGGAGAGCGATTCCGGCGAGAAGAGCGAGGCAAGCGAGGGGCAGGGCGTGAATGGCCAGACGCCGAGTCCGAGTCGAGTCCGAGCTCGTCGCCGGCGGCGGAAATGGAAGTGGCAGCCGATTGTGCAGGCCCAGGAGATTGGGATTCTGCTGTTGCAGTTGGGGATTGTTATTGTCGTTATGCGGTTGCTCCGGCCCGGAATTCCGTTGCCCGGGTCGGACCCCAGGCCGCCGACGACGTTTATTAGTGTGCCTTATAGTGACTTTTTGAGTAAGATTAATACTAACCAGGTGCAGAAGGTGGAGGTTGATGGGGTTCATGTTATGTTTAAGCTCAAGTCGGAGCCGGGTGGTGAGGTGGAGAGTGAAATGAATGGTGCCAGTAAGTTTCAGGAGTCGGAGGCTTTGCTAAGAAGTGTGGCTCCGACGAGGAGGGTGGTTTATACGACCACTAGGCCGACTGATATCAAGACGCCGTATGAGAAGATGCTTGAGAATGAGGTGGAGTTTGGATCCCCGGATAAGCGCTCTGGCGGATTCATGAACTCTGCGATGATAGCTTTGTTTTACGTTGCTGTGCTTGCAGGGCTTCTCCACCGGTTCCCTGTTAGCTTTTCTCAGCATACTGCTGGTCAGATTAGGAATAGAAAACCTGGGGGCTCTGGTGGTGCCAAAACATCTGAACCCTCGGAAGCAATAACCTTTGCTGATGTTGCTGGTGTTGACGAGGCTAAGGAGGAGCTAGAGGAAATTGTGGAATTTCTTCGGAATCCAGACAGGTATATACGACTTGGTGCTCGTCCTCCCCGTGGTGTTCTGCTGGTGGGTCTTCCTGGGACAGGTAAGACTCTTCTTGCAAAGGCTGTGGCTGGGGAAGCTGAAGTACCCTTTATAAGTTGCTCTGCTAGTGAGTTCGTAGAGCTCTATGTGGGCATGGGTGCCTCTCGTGTAAGGGACCTATTTGCACGGGCCAAAAAGGAAGCACCGTCAATAATATTTATTGATGAGATAGATGCTGTGGCAAAAAGTCGTGATGGAAAACACCGCATTGTCAGCAATGACGAGAGAGAACAAACATTGAATCAGTTGCTCACTGAGATGGATGGGTTTGACAGCAACTCTGCGGTTATTGTTCTTGGAGCTACTAATCGCGCAGATGTTTTAGACCCGGCACTTCGTCGACCAGGGAGATTTGATCGTGTAGTTATGGTGGAAACGCCTGATAGGATTGGAAGAGAATCAATTCTCAAAGTGCATGTTTCCAAAAAGGAACTTCCTTTAGCTAAAGATGTTTACCTTGGTGACATTGCTTCTATGACCACAGGCTTTACTGGGGCTGATCTTGCAAATTTGGTGAATGAAGCTGCTTTGTTGGCCGGAAGACAAAGCAAGGTGGTTGTGGAAAAGATTGATTTCATTCAGGCTGTGGAGAGATCAATAGCTAAATTGAGCATATTGCCAAGGACAGGGGGGGCATTGGGTTTTACTTACACTCCTCCAGCGACTGAAGATAGATATTTACTATTCATTGATGAGTTACGTGGACGTTTGGTTACACTTCTTGGAGGACGCGCAGCAGAGGAGTTTGTATATTCAGGTCGTGTATCAACTGGTGCGCTTGATGACATACGGCGAGCCACGGAAATGGCATATAAAGCAGTATCTGAGTATGGTCTTAATGAGAACATTGGCCCTGTGTCTATAGCAACACTTTCTGCTGGTGGAATGGATGAGTCTGGGGGACTTTTTGGAAGGGATCAGGGACACCTTGTTAATCTTGCTCAACGAGAGACTCAAGAATTGCTGCAATCTGCTATGGAGGTAGCCCTTTGTGTTGTACGTGCTAATCCTGTTGTTTTGGAGGGCCTTGGTGCTCATTTGGAAGAAAAAGAGAAAGTAGAAGGTGAAGAGCTACACAAGTGGTTACAATTGGTGGTTGCACCAGCAGAACTTGCTGCCTTCATTAAAGGCAAGCAACAGGCCCTTCTTCCATTGCAGACCACCTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

758

Amino Acids

82.64

Weight (kDa)

8.36

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	360 - 493	9.6e-44	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	518 - 560	3.5e-10	AAA+ lid domain
Peptidase_M41	PF01434	565 - 727	6.1e-25	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47060 AT5G58870
fragaria_vesca	FvH4_3g38190 FvH4_3g38190 FvH4_3g38190
malus_domestica	MD03G1074100.v1.1 MD11G1080400.v1.1
prunus_persica	Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1
pyrus_communis	pycom03g05990 pycom11g06770
rosa_chinensis	RchiOBHm_Chr5g0068621
rosa_laevigata	RLG00000035985
rosa_multiflora	Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012250
rosa_rugosa	Rorug05G0392000
rosa_samantha	Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200
rosa_wichuraiana	Rw5G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1157
AccB1I	GGYRCC	5 cut(s)	113, 163, 641, 932, 1202
AccI	GTMKAC	1 cut(s)	1444
AccII	CGCG	3 cut(s)	111, 1416, 1836
AclWI	GGATC	3 cut(s)	771, 784, 2028
AcoI	YGGCCR	2 cut(s)	319, 1638
AcsI	RAATTY	3 cut(s)	465, 1022, 1612
AcuI	CTGAAG	2 cut(s)	1164, 1791
AcyI	GRCGYC	4 cut(s)	114, 164, 326, 737
AfaI	GTAC	3 cut(s)	56, 1149, 2103
AfeI	AGCGCT	1 cut(s)	791
AfiI	CCNNNNNNNGG	7 cut(s)	123, 124, 198, 476, 1073, 1103, 1730
AgeI	ACCGGT	1 cut(s)	861
AgsI	TTSAA	1 cut(s)	1345
AhdI	GACNNNNNGTC	1 cut(s)	330
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	6 cut(s)	396, 488, 552, 916, 1096, 1447
Alw21I	GWGCWC	4 cut(s)	352, 1063, 1188, 2140
Alw26I	GTCTC	2 cut(s)	193, 2048
AlwI	GGATC	3 cut(s)	771, 784, 2028
AlwNI	CAGNNNCTG	2 cut(s)	1769, 1928
Ama87I	CYCGRG	1 cut(s)	476
Aor51HI	AGCGCT	1 cut(s)	791
ApeKI	GCWGC	6 cut(s)	150, 379, 1628, 1838, 2068, 2219
ApoI	RAATTY	3 cut(s)	465, 1022, 1612
AseI	ATTAAT	1 cut(s)	543
AsiGI	ACCGGT	1 cut(s)	861
Asp700I	GAANNNNTTC	3 cut(s)	200, 1026, 1506
AspLEI	GCGC	6 cut(s)	116, 166, 792, 1418, 1838, 1882
AspS9I	GGNCC	8 cut(s)	394, 459, 484, 1219, 1233, 1955, 2128, 2245
AsuC2I	CCSGG	6 cut(s)	462, 477, 478, 612, 782, 1433
AsuHPI	GGTGA	4 cut(s)	629, 1577, 1630, 2180
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	2 cut(s)	484, 1219
BalI	TGGCCA	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	776
BanI	GGYRCC	5 cut(s)	113, 163, 641, 932, 1202
BanII	GRGCYC	3 cut(s)	352, 926, 1188
BarI	GAAGNNNNNNTAC	2 cut(s)	1131, 1163
BauI	CACGAG	1 cut(s)	1209
BbsI	GAAGAC	2 cut(s)	1085, 1651
Bbv12I	GWGCWC	4 cut(s)	352, 1063, 1188, 2140
BbvI	GCAGC	6 cut(s)	137, 391, 1615, 1850, 2055, 2206
BccI	CCATC	4 cut(s)	569, 1292, 1357, 1361
BceAI	ACGGC	3 cut(s)	151, 724, 1910
BciT130I	CCWGG	6 cut(s)	398, 490, 554, 918, 1098, 1449
BcnI	CCSGG	6 cut(s)	462, 477, 478, 612, 782, 1433
BcoDI	GTCTC	2 cut(s)	193, 2048
BfaI	CTAG	4 cut(s)	123, 717, 1007, 1170
BfmI	CTRYAG	2 cut(s)	79, 1965
BfoI	RGCGCY	3 cut(s)	117, 167, 793
Bme18I	GGWCC	2 cut(s)	484, 1219
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	476
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	8 cut(s)	394, 459, 484, 1219, 1233, 1955, 2128, 2245
BmrI	ACTGGG	2 cut(s)	112, 1605
BmsI	GCATC	2 cut(s)	741, 1267
BmuI	ACTGGG	2 cut(s)	112, 1605
BpiI	GAAGAC	2 cut(s)	1085, 1651
BpmI	CTGGAG	1 cut(s)	1746
Bpu10I	CCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	3 cut(s)	584, 776, 2043
BpuMI	CCSGG	6 cut(s)	462, 477, 478, 612, 782, 1433
BsaAI	YACGTR	2 cut(s)	1805, 2105
BsaHI	GRCGYC	4 cut(s)	114, 164, 326, 737
BsaI	GGTCTC	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	861
BsaXI	ACNNNNNCTCC	2 cut(s)	1741, 1771
Bsc4I	CCNNNNNNNGG	7 cut(s)	123, 124, 198, 476, 1073, 1103, 1730
Bse118I	RCCGGY	2 cut(s)	357, 861
Bse1I	ACTGG	4 cut(s)	118, 645, 1600, 1879
Bse3DI	GCAATG	3 cut(s)	1327, 1569, 2255
BseBI	CCWGG	6 cut(s)	398, 490, 554, 918, 1098, 1449
BseGI	GGATG	2 cut(s)	1372, 1999
BseLI	CCNNNNNNNGG	7 cut(s)	123, 124, 198, 476, 1073, 1103, 1730
BseMI	GCAATG	3 cut(s)	1327, 1569, 2255
BseMII	CTCAG	3 cut(s)	896, 1350, 1920
BseNI	ACTGG	4 cut(s)	118, 645, 1600, 1879
BseRI	GAGGAG	5 cut(s)	243, 709, 1016, 1749, 1859
BseXI	GCAGC	6 cut(s)	137, 391, 1615, 1850, 2055, 2206
BseYI	CCCAGC	1 cut(s)	1133
BsgI	GTGCAG	2 cut(s)	410, 578
Bsh1236I	CGCG	3 cut(s)	111, 1416, 1836
BshNI	GGYRCC	5 cut(s)	113, 163, 641, 932, 1202
BshTI	ACCGGT	1 cut(s)	861
BsiHKAI	GWGCWC	4 cut(s)	352, 1063, 1188, 2140
BsiHKCI	CYCGRG	1 cut(s)	476
BslFI	GGGAC	5 cut(s)	120, 1114, 1232, 2019, 2040
BslI	CCNNNNNNNGG	7 cut(s)	123, 124, 198, 476, 1073, 1103, 1730
BsmAI	GTCTC	2 cut(s)	193, 2048
BsmFI	GGGAC	5 cut(s)	120, 1114, 1232, 2019, 2040
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	476
Bsp1286I	GDGCHC	5 cut(s)	352, 926, 1063, 1188, 2140
Bsp143I	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
BspCNI	CTCAG	3 cut(s)	895, 1351, 1921
BspFNI	CGCG	3 cut(s)	111, 1416, 1836
BspHI	TCATGA	1 cut(s)	804
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	3 cut(s)	771, 784, 2028
BspQI	GCTCTTC	2 cut(s)	281, 2166
BspT107I	GGYRCC	5 cut(s)	113, 163, 641, 932, 1202
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	3 cut(s)	1327, 1569, 2255
BsrFI	RCCGGY	2 cut(s)	357, 861
BsrI	ACTGG	4 cut(s)	118, 645, 1600, 1879
BssAI	RCCGGY	2 cut(s)	357, 861
BssMI	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
BssNI	GRCGYC	4 cut(s)	114, 164, 326, 737
BssSI	CACGAG	1 cut(s)	1209
BssT1I	CCWWGG	3 cut(s)	1561, 1724, 2131
Bst2BI	CACGAG	1 cut(s)	1209
Bst2UI	CCWGG	6 cut(s)	398, 490, 554, 918, 1098, 1449
Bst4CI	ACNGT	2 cut(s)	244, 1251
Bst6I	CTCTTC	4 cut(s)	281, 1119, 1492, 2166
BstACI	GRCGYC	4 cut(s)	114, 164, 326, 737
BstAPI	GCANNNNNTGC	1 cut(s)	2216
BstBAI	YACGTR	2 cut(s)	1805, 2105
BstC8I	GCNNGC	6 cut(s)	298, 359, 393, 846, 1899, 2237
BstDEI	CTNAG	5 cut(s)	674, 882, 996, 1359, 1929
BstDSI	CCRYGG	3 cut(s)	109, 1072, 1902
BstENI	CCTNNNNNAGG	1 cut(s)	1101
BstF5I	GGATG	2 cut(s)	1372, 1999
BstFNI	CGCG	3 cut(s)	111, 1416, 1836
BstH2I	RGCGCY	3 cut(s)	117, 167, 793
BstHHI	GCGC	6 cut(s)	116, 166, 792, 1418, 1838, 1882
BstKTI	GATC	5 cut(s)	779, 1462, 1606, 1700, 2023
BstMAI	GTCTC	2 cut(s)	193, 2048
BstMBI	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
BstNI	CCWGG	6 cut(s)	398, 490, 554, 918, 1098, 1449
BstNSI	RCATGY	2 cut(s)	212, 1523
BstSFI	CTRYAG	2 cut(s)	79, 1965
BstUI	CGCG	3 cut(s)	111, 1416, 1836
BstV1I	GCAGC	6 cut(s)	137, 391, 1615, 1850, 2055, 2206
BstV2I	GAAGAC	2 cut(s)	1085, 1651
BstX2I	RGATCY	1 cut(s)	776
BstXI	CCANNNNNNTGG	2 cut(s)	404, 1909
BstYI	RGATCY	1 cut(s)	776
BtgI	CCRYGG	3 cut(s)	109, 1072, 1902
BtgZI	GCGATG	1 cut(s)	830
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	1372, 1999
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 1356
Cac8I	GCNNGC	6 cut(s)	298, 359, 393, 846, 1899, 2237
CaiI	CAGNNNCTG	2 cut(s)	1769, 1928
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	6 cut(s)	116, 166, 792, 1418, 1838, 1882
Cfr10I	RCCGGY	2 cut(s)	357, 861
Cfr13I	GGNCC	8 cut(s)	394, 459, 484, 1219, 1233, 1955, 2128, 2245
Cfr42I	CCGCGG	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	476
CseI	GACGC	3 cut(s)	334, 745, 1842
CsiI	ACCWGGT	1 cut(s)	552
Csp6I	GTAC	3 cut(s)	55, 1148, 2102
CspAI	ACCGGT	1 cut(s)	861
CspCI	CAANNNNNGTGG	2 cut(s)	1110, 1145
CviAII	CATG	5 cut(s)	209, 584, 805, 1198, 1520
CviQI	GTAC	3 cut(s)	55, 1148, 2102
DdeI	CTNAG	5 cut(s)	674, 882, 996, 1359, 1929
DinI	GGCGCC	2 cut(s)	115, 165
DpnI	GATC	5 cut(s)	778, 1461, 1605, 1699, 2022
DpnII	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
DriI	GACNNNNNGTC	1 cut(s)	330
EaeI	YGGCCR	2 cut(s)	319, 1638
Eam1104I	CTCTTC	4 cut(s)	281, 1119, 1492, 2166
Eam1105I	GACNNNNNGTC	1 cut(s)	330
EarI	CTCTTC	4 cut(s)	281, 1119, 1492, 2166
EciI	GGCGGA	2 cut(s)	379, 813
Ecl136II	GAGCTC	2 cut(s)	350, 1186
Eco130I	CCWWGG	3 cut(s)	1561, 1724, 2131
Eco24I	GRGCYC	3 cut(s)	352, 926, 1188
Eco31I	GGTCTC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	730
Eco47I	GGWCC	2 cut(s)	484, 1219
Eco47III	AGCGCT	1 cut(s)	791
Eco53kI	GAGCTC	2 cut(s)	350, 1186
Eco57I	CTGAAG	2 cut(s)	1164, 1791
Eco88I	CYCGRG	1 cut(s)	476
EcoICRI	GAGCTC	2 cut(s)	350, 1186
EcoNI	CCTNNNNNAGG	1 cut(s)	1101
EcoO109I	RGGNCCY	3 cut(s)	1219, 2128, 2245
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	6 cut(s)	396, 488, 552, 916, 1096, 1447
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	3 cut(s)	1561, 1724, 2131
EcoT38I	GRGCYC	3 cut(s)	352, 926, 1188
EgeI	GGCGCC	2 cut(s)	115, 165
EheI	GGCGCC	2 cut(s)	115, 165
ErhI	CCWWGG	3 cut(s)	1561, 1724, 2131
FaeI	CATG	5 cut(s)	212, 587, 808, 1201, 1523
FaqI	GGGAC	5 cut(s)	120, 1114, 1232, 2019, 2040
FatI	CATG	5 cut(s)	208, 583, 804, 1197, 1519
FblI	GTMKAC	1 cut(s)	1444
FokI	GGATG	2 cut(s)	1379, 2006
FriOI	GRGCYC	3 cut(s)	352, 926, 1188
FspBI	CTAG	4 cut(s)	123, 717, 1007, 1170
GlaI	GCGC	6 cut(s)	115, 165, 791, 1417, 1837, 1881
GsaI	CCCAGC	1 cut(s)	1137
GsuI	CTGGAG	1 cut(s)	1746
HaeII	RGCGCY	3 cut(s)	117, 167, 793
HgaI	GACGC	3 cut(s)	334, 745, 1842
HhaI	GCGC	6 cut(s)	116, 166, 792, 1418, 1838, 1882
Hin1I	GRCGYC	4 cut(s)	114, 164, 326, 737
Hin1II	CATG	5 cut(s)	212, 587, 808, 1201, 1523
Hin6I	GCGC	6 cut(s)	114, 164, 790, 1416, 1836, 1880
HinP1I	GCGC	6 cut(s)	114, 164, 790, 1416, 1836, 1880
HincII	GTYRAC	2 cut(s)	988, 1445
HindII	GTYRAC	2 cut(s)	988, 1445
HphI	GGTGA	4 cut(s)	629, 1577, 1630, 2180
Hpy166II	GTNNAC	4 cut(s)	988, 1445, 1558, 1808
Hpy188III	TCNNGA	9 cut(s)	137, 172, 238, 656, 733, 805, 1037, 1295, 2060
Hpy8I	GTNNAC	4 cut(s)	988, 1445, 1558, 1808
Hpy99I	CGWCG	6 cut(s)	143, 357, 502, 505, 694, 1446
HpyAV	CCTTC	6 cut(s)	169, 556, 2010, 2159, 2233, 2258
HpyCH4III	ACNGT	2 cut(s)	244, 1251
HpyCH4IV	ACGT	7 cut(s)	25, 141, 503, 834, 1804, 1810, 2104
HpyF3I	CTNAG	5 cut(s)	674, 882, 996, 1359, 1929
HpySE526I	ACGT	7 cut(s)	25, 141, 503, 834, 1804, 1810, 2104
Hsp92I	GRCGYC	4 cut(s)	114, 164, 326, 737
Hsp92II	CATG	5 cut(s)	212, 587, 808, 1201, 1523
HspAI	GCGC	6 cut(s)	114, 164, 790, 1416, 1836, 1880
KasI	GGCGCC	2 cut(s)	113, 163
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
LguI	GCTCTTC	2 cut(s)	281, 2166
LmnI	GCTCC	5 cut(s)	459, 607, 691, 1003, 1403
Lsp1109I	GCAGC	6 cut(s)	137, 391, 1615, 1850, 2055, 2206
LweI	GCATC	2 cut(s)	741, 1267
MabI	ACCWGGT	1 cut(s)	552
MaeI	CTAG	4 cut(s)	123, 717, 1007, 1170
MaeII	ACGT	7 cut(s)	25, 141, 503, 834, 1804, 1810, 2104
MaeIII	GTNAC	7 cut(s)	74, 218, 524, 1565, 1800, 1816, 2187
MalI	GATC	5 cut(s)	778, 1461, 1605, 1699, 2022
MboI	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
MfeI	CAATTG	1 cut(s)	2192
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	5 cut(s)	352, 926, 1063, 1188, 2140
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	9 cut(s)	61, 465, 1014, 1022, 1506, 1612, 1709, 2063, 2192
MluNI	TGGCCA	1 cut(s)	321
Mly113I	GGCGCC	2 cut(s)	114, 164
MlyI	GAGTC	7 cut(s)	340, 346, 351, 668, 1105, 2006, 2050
MmeI	TCCRAC	5 cut(s)	53, 462, 585, 642, 713
Mox20I	TGGCCA	1 cut(s)	321
MreI	CGCCGGCG	1 cut(s)	357
MroNI	GCCGGC	1 cut(s)	357
MroXI	GAANNNNTTC	3 cut(s)	200, 1026, 1506
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	6 cut(s)	543, 594, 1941, 2037, 2229, 2275
MslI	CAYNNNNRTG	2 cut(s)	1361, 1907
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	2192
MvaI	CCWGG	6 cut(s)	398, 490, 554, 918, 1098, 1449
MvnI	CGCG	3 cut(s)	111, 1416, 1836
NaeI	GCCGGC	1 cut(s)	359
NarI	GGCGCC	2 cut(s)	114, 164
NciI	CCSGG	6 cut(s)	462, 477, 478, 612, 782, 1433
NdeII	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	5 cut(s)	212, 587, 808, 1201, 1523
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	3 cut(s)	74, 524, 1565
NspI	RCATGY	2 cut(s)	212, 1523
PagI	TCATGA	1 cut(s)	804
PciSI	GCTCTTC	2 cut(s)	281, 2166
PcsI	WCGNNNNNNNCGW	3 cut(s)	164, 332, 1069
PdiI	GCCGGC	1 cut(s)	359
PdmI	GAANNNNTTC	3 cut(s)	200, 1026, 1506
PfeI	GAWTC	6 cut(s)	275, 409, 801, 1033, 1345, 1502
PinAI	ACCGGT	1 cut(s)	861
PleI	GAGTC	7 cut(s)	339, 345, 350, 667, 1105, 2005, 2050
PluTI	GGCGCC	2 cut(s)	117, 167
PpsI	GAGTC	7 cut(s)	339, 345, 350, 667, 1105, 2005, 2050
Ppu21I	YACGTR	2 cut(s)	1805, 2105
PpuMI	RGGWCCY	1 cut(s)	1219
PshBI	ATTAAT	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	1157
Psp124BI	GAGCTC	2 cut(s)	352, 1188
Psp5II	RGGWCCY	1 cut(s)	1219
Psp6I	CCWGG	6 cut(s)	396, 488, 552, 916, 1096, 1447
PspFI	CCCAGC	1 cut(s)	1133
PspGI	CCWGG	6 cut(s)	396, 488, 552, 916, 1096, 1447
PspPI	GGNCC	8 cut(s)	394, 459, 484, 1219, 1233, 1955, 2128, 2245
PspPPI	RGGWCCY	1 cut(s)	1219
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	2 cut(s)	1769, 1928
PsuI	RGATCY	1 cut(s)	776
RsaI	GTAC	3 cut(s)	56, 1149, 2103
RsaNI	GTAC	3 cut(s)	55, 1148, 2102
RseI	CAYNNNNRTG	2 cut(s)	1361, 1907
SacI	GAGCTC	2 cut(s)	352, 1188
SacII	CCGCGG	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	1443
SapI	GCTCTTC	2 cut(s)	281, 2166
SaqAI	TTAA	6 cut(s)	543, 594, 1941, 2037, 2229, 2275
Sau3AI	GATC	5 cut(s)	776, 1459, 1603, 1697, 2020
Sau96I	GGNCC	8 cut(s)	394, 459, 484, 1219, 1233, 1955, 2128, 2245
SchI	GAGTC	7 cut(s)	340, 346, 351, 668, 1105, 2006, 2050
SduI	GDGCHC	5 cut(s)	352, 926, 1063, 1188, 2140
SexAI	ACCWGGT	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	741, 1267
SfcI	CTRYAG	2 cut(s)	79, 1965
SfoI	GGCGCC	2 cut(s)	115, 165
Sfr303I	CCGCGG	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	357
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	484, 1219
SmaI	CCCGGG	1 cut(s)	478
SmiMI	CAYNNNNRTG	2 cut(s)	1361, 1907
SmlI	CTYRAG	3 cut(s)	599, 755, 2058
SmoI	CTYRAG	3 cut(s)	599, 755, 2058
Sse9I	AATT	9 cut(s)	61, 465, 1014, 1022, 1506, 1612, 1709, 2063, 2192
SspDI	GGCGCC	2 cut(s)	113, 163
SspI	AATATT	1 cut(s)	1260
SspMI	CTAG	4 cut(s)	123, 717, 1007, 1170
SstI	GAGCTC	2 cut(s)	352, 1188
StyI	CCWWGG	3 cut(s)	1561, 1724, 2131
TaaI	ACNGT	2 cut(s)	244, 1251
TaiI	ACGT	7 cut(s)	28, 144, 506, 837, 1807, 1813, 2107
TaqI	TCGA	2 cut(s)	340, 1444
TasI	AATT	9 cut(s)	61, 465, 1014, 1022, 1506, 1612, 1709, 2063, 2192
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	4 cut(s)	114, 164, 364, 496
TfiI	GAWTC	6 cut(s)	275, 409, 801, 1033, 1345, 1502
Tru1I	TTAA	6 cut(s)	543, 594, 1941, 2037, 2229, 2275
Tru9I	TTAA	6 cut(s)	543, 594, 1941, 2037, 2229, 2275
TscAI	CASTG	2 cut(s)	83, 1363
TseFI	GTSAC	3 cut(s)	74, 524, 1565
TseI	GCWGC	6 cut(s)	150, 379, 1628, 1838, 2068, 2219
Tsp45I	GTSAC	3 cut(s)	74, 524, 1565
TspDTI	ATGAA	8 cut(s)	572, 650, 793, 821, 1638, 1669, 1780, 2215
TspGWI	ACGGA	3 cut(s)	62, 459, 1919
TspMI	CCCGGG	1 cut(s)	476
TspRI	CASTG	2 cut(s)	83, 1363
VpaK11BI	GGWCC	2 cut(s)	484, 1219
VspI	ATTAAT	1 cut(s)	543
XagI	CCTNNNNNAGG	1 cut(s)	1101
XapI	RAATTY	3 cut(s)	465, 1022, 1612
XceI	RCATGY	2 cut(s)	212, 1523
XmaI	CCCGGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	1444
XmnI	GAANNNNTTC	3 cut(s)	200, 1026, 1506
XspI	CTAG	4 cut(s)	123, 717, 1007, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.