Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008787

Physical Location & Seq

Genomic Coordinates Forward (+)

6940298 .. 6941242

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1081300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTCTCAAACGCTATCAGGATGCTAAAGCAGGATACCAATTGGCCAAATCGTTCAATGCCGAGAAGTACTTGAGAAAAGTGGGATTGGGCAAAGAAGACTACTACTTCTGGAAGCAAATAGGCAAGGCACTGGTGTGCACATACACGCTCTTCGGCGTGGCCTGGCTCTACAACGAGAAATCGCCACTTGGGTGGTGGACGCTGAAGCCTAGGCCCAAGGAAGAGAGAGAGCTAGCGCACCTGTACGAGCGTCGTGAGTTCCCATACCCCGGGGATGAGGAAGCCATGGAAGAGTTTGTTGCCAAGGGGGGAATGATCGGCACGACAATTGGCCCGAAAGGGTTTGTCGAGACGGACAAAGATGCGTTTAACTATCAGAAGGAGCTGCAGAAGAAGAAGCTGGAGCAGGAAGCGCAGAAGCTGTGGGTGAGGATGAAGAATGAGGTCATTTCGGAGCTTCAAGAGAAGGGCTACGTCGTTGACGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

19.26

Weight (kDa)

8.43

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58920
fragaria_vesca	FvH4_3g38110
malus_domestica	MD03G1077000.v1.1 MD11G1081300.v1.1
prunus_persica	Prupe.6G061600_v2.0.a1
pyrus_communis	pycom11g06950
rosa_chinensis	RchiOBHm_Chr5g0068461 RchiOBHm_Chr5g0068491
rosa_laevigata	RLG00000035977
rosa_multiflora	Rmu_sc0003221.1_g000018 Rmu_sc0005087.1_g000010 Rmu_sc0013656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012320 Rroxscaffold_1G00013060
rosa_rugosa	Rorug05G0390200
rosa_samantha	Rh5AG448800 Rh5BG466900 Rh5BG467000 Rh5BG467100 Rh5DG480300 Rh5DG480500
rosa_wichuraiana	Rw5G041890 Rw5G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	71, 248
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	58, 464
AjnI	CCWGG	1 cut(s)	164
AleI	CACNNNNGTG	2 cut(s)	136, 193
AluBI	AGCT	5 cut(s)	235, 388, 403, 424, 460
AluI	AGCT	5 cut(s)	235, 388, 403, 424, 460
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	347
Alw44I	GTGCAC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	424
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	4 cut(s)	45, 162, 215, 334
ApaLI	GTGCAC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	388
AspA2I	CCTAGG	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	241, 418
AspS9I	GGNCC	2 cut(s)	216, 335
AsuC2I	CCSGG	2 cut(s)	273, 274
AsuHPI	GGTGA	1 cut(s)	442
AsuNHI	GCTAGC	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	272
AvrII	CCTAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	29
BcnI	CCSGG	2 cut(s)	273, 274
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	213, 236
BfmI	CTRYAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	389
BlnI	CCTAGG	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	390
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	3 cut(s)	166, 273, 274
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	216, 335
BmrFI	CCNGG	3 cut(s)	166, 273, 274
BmsI	GCATC	2 cut(s)	13, 355
BmtI	GCTAGC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	273, 274
BsaJI	CCNNGG	7 cut(s)	212, 219, 271, 272, 273, 288, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	7 cut(s)	212, 219, 271, 272, 273, 288, 306
BseGI	GGATG	3 cut(s)	28, 283, 441
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	375
BshFI	GGCC	4 cut(s)	47, 164, 217, 336
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	347
BsmBI	CGTCTC	1 cut(s)	347
BsnI	GGCC	4 cut(s)	47, 164, 217, 336
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	288
BspANI	GGCC	4 cut(s)	47, 164, 217, 336
BspCNI	CTCAG	1 cut(s)	481
BspMAI	CTGCAG	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	7 cut(s)	212, 219, 271, 272, 273, 288, 306
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	4 cut(s)	212, 219, 288, 306
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	3 cut(s)	158, 219, 288
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	28, 283, 441
BstHHI	GCGC	2 cut(s)	241, 418
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	164, 271, 272
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	4 cut(s)	47, 164, 217, 336
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	28, 283, 441
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	424
CfoI	GCGC	2 cut(s)	241, 418
Cfr13I	GGNCC	2 cut(s)	216, 335
Cfr9I	CCCGGG	1 cut(s)	272
CseI	GACGC	2 cut(s)	211, 242
Csp6I	GTAC	2 cut(s)	70, 247
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	2 cut(s)	70, 247
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	3 cut(s)	158, 219, 288
EarI	CTCTTC	3 cut(s)	158, 219, 288
Eco130I	CCWWGG	4 cut(s)	212, 219, 288, 306
Eco57I	CTGAAG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	4 cut(s)	212, 219, 288, 306
ErhI	CCWWGG	4 cut(s)	212, 219, 288, 306
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	145, 268, 290
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	3 cut(s)	35, 290, 448
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	2 cut(s)	213, 236
GlaI	GCGC	2 cut(s)	240, 417
GluI	GCNGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	4 cut(s)	47, 164, 217, 336
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	2 cut(s)	211, 242
HhaI	GCGC	2 cut(s)	241, 418
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	2 cut(s)	239, 416
HinP1I	GCGC	2 cut(s)	239, 416
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	141, 201, 484
Hpy188I	TCNGA	2 cut(s)	381, 457
Hpy188III	TCNNGA	5 cut(s)	20, 112, 257, 352, 464
Hpy8I	GTNNAC	3 cut(s)	141, 201, 484
Hpy99I	CGWCG	2 cut(s)	258, 482
HpyAV	CCTTC	2 cut(s)	376, 463
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	2 cut(s)	141, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	2 cut(s)	239, 416
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	3 cut(s)	385, 406, 457
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	2 cut(s)	13, 355
MaeI	CTAG	2 cut(s)	213, 236
MaeII	ACGT	1 cut(s)	477
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	7 cut(s)	110, 145, 236, 305, 406, 409, 451
MfeI	CAATTG	2 cut(s)	41, 330
MhlI	GDGCHC	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	2 cut(s)	41, 330
MluNI	TGGCCA	1 cut(s)	47
MnlI	CCTC	3 cut(s)	274, 426, 439
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	2 cut(s)	136, 193
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	3 cut(s)	166, 273, 274
MunI	CAATTG	2 cut(s)	41, 330
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	2 cut(s)	273, 274
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	292
NmeAIII	GCCGAG	1 cut(s)	88
OliI	CACNNNNGTG	2 cut(s)	136, 193
PciSI	GCTCTTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	216, 335
PstI	CTGCAG	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	71, 248
RsaNI	GTAC	2 cut(s)	70, 247
RseI	CAYNNNNRTG	2 cut(s)	136, 193
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	2 cut(s)	216, 335
ScaI	AGTACT	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	166, 273, 274
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	8 cut(s)	237, 246, 390, 405, 426, 450, 462, 480
SfaNI	GCATC	2 cut(s)	13, 355
SfcI	CTRYAG	1 cut(s)	389
SmaI	CCCGGG	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	136, 193
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	41, 330
SspMI	CTAG	2 cut(s)	213, 236
StyD4I	CCNGG	3 cut(s)	164, 271, 272
StyI	CCWWGG	4 cut(s)	212, 219, 288, 306
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	41, 330
TatI	WGTACW	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	371
TspMI	CCCGGG	1 cut(s)	272
TspRI	CASTG	1 cut(s)	138
VneI	GTGCAC	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XmaI	CCCGGG	1 cut(s)	272
XmaJI	CCTAGG	1 cut(s)	212
XspI	CTAG	2 cut(s)	213, 236
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.