Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008787

Physical Location & Seq

Genomic Coordinates Reverse (-)

75790780 .. 75798634

Gene Structure 7855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG480500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAATGCGTGACTCAAAATGTCTTGAGCTCTTTCTTCTTCCTTGACATTTTAGGTTATCAGGCGGTGAAATCGTTGAATGCCCAGAAGTTCCTAAAGAAAATAGGATGTGGTAAAGAGGACTACCACTGGAAACAAATCGGCAAGGCTTTACTGTGCACGTACACGCTGGGTGGAGTAGCTTGGCTCTATAATGAGAAATCGCCACTCGGATGGTGGACATTGAAGCCTCATCCCAAGGAGGAGAGAGAGCTAGCTCACTTGTATGAGCGGCGAGAATTTCCATATCCGGGAGACGAAGAAGCAATGGAAGAGTTTGTGGCAAAGGGTGGTATGATTGTTACTGTGATAAATGCAGATGAGTTAAACGTGGAGGAGGTTTTAATTTCTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.99

Weight (kDa)

5.63

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58920
fragaria_vesca	FvH4_3g38110
malus_domestica	MD03G1077000.v1.1 MD11G1081300.v1.1
prunus_persica	Prupe.6G061600_v2.0.a1
pyrus_communis	pycom11g06950
rosa_chinensis	RchiOBHm_Chr5g0068461 RchiOBHm_Chr5g0068491
rosa_laevigata	RLG00000035977
rosa_multiflora	Rmu_sc0003221.1_g000018 Rmu_sc0005087.1_g000010 Rmu_sc0013656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012320 Rroxscaffold_1G00013060
rosa_rugosa	Rorug05G0390200
rosa_samantha	Rh5AG448800 Rh5BG466900 Rh5BG467000 Rh5BG467100 Rh5DG480300 Rh5DG480500
rosa_wichuraiana	Rw5G041890 Rw5G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	271
AciI	CCGC	2 cut(s)	65, 271
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	79, 226
AluBI	AGCT	4 cut(s)	30, 182, 253, 257
AluI	AGCT	4 cut(s)	30, 182, 253, 257
Alw21I	GWGCWC	2 cut(s)	32, 161
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	79
AsuNHI	GCTAGC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	32, 161
BccI	CCATC	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	3 cut(s)	113, 218, 232
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	257, 389
BseSI	GKGCMC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	32, 161
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	32, 161
BspACI	CCGC	2 cut(s)	65, 271
BspOI	GCTAGC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	156, 346
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	113, 218, 232
BstMAI	GTCTC	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	161
BstXI	CCANNNNNNTGG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	113, 218, 232
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	7 cut(s)	30, 149, 182, 187, 229, 253, 257
CviKI_1	RGCY	7 cut(s)	30, 149, 182, 187, 229, 253, 257
CviQI	GTAC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	288
FaiI	YATR	4 cut(s)	192, 267, 286, 335
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	3 cut(s)	120, 219, 225
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	1 cut(s)	290
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	159, 165, 219
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	3 cut(s)	159, 165, 219
HpyCH4III	ACNGT	2 cut(s)	156, 346
HpyCH4IV	ACGT	2 cut(s)	161, 369
HpyCH4V	TGCA	2 cut(s)	159, 356
HpySE526I	ACGT	2 cut(s)	161, 369
LpnPI	CCDG	6 cut(s)	47, 98, 115, 155, 303, 375
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	2 cut(s)	161, 369
MaeIII	GTNAC	2 cut(s)	10, 340
MbiI	CCGCTC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	28, 31, 311, 323
MhlI	GDGCHC	2 cut(s)	32, 161
MluCI	AATT	2 cut(s)	278, 384
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	112, 235, 240, 367, 370
MseI	TTAA	2 cut(s)	365, 383
MslI	CAYNNNNRTG	2 cut(s)	211, 264
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	291
NheI	GCTAGC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	10
PctI	GAATGC	1 cut(s)	85
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	211, 264
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	365, 383
SatI	GCNGC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	32, 161
SetI	ASST	8 cut(s)	32, 58, 164, 184, 255, 259, 372, 381
SmiMI	CAYNNNNRTG	2 cut(s)	211, 264
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	2 cut(s)	278, 384
SsiI	CCGC	2 cut(s)	65, 271
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	156, 346
TaiI	ACGT	2 cut(s)	164, 372
TasI	AATT	2 cut(s)	278, 384
TauI	GCSGC	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	365, 383
Tru9I	TTAA	2 cut(s)	365, 383
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.