Rmu_sc0013656.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013656.1
OG0008787
Physical Location & Seq
Forward (+)
1 .. 1231
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013656.1_g000001.1.cds

Sequence Viewer

Length: 401 bp
gttaccaagcggcgaaatcgttgaatgcccagaagttcctgaagaaaataggatgcggtaaagaggactatcactggaaaaaaatcggcaaggctttactgtgcacgtgcacgctgggtggagtagcttggctctacaatgagaaatcgccgctcggatggtggacgctgaaacctcgtcccaaggagggaagagagctagctcacttgtataagcggcaagaatttccatacccgggagacaaagaagcaatggaagagatatctaacaataaagatgcactgaactatcagaaggagttgcagaataagaaatttgagcaggaagcgcagaagttgtggatcaggatgaggaatgaggtcattttggagcttccagataagggttatgatgttgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.53

Weight (kDa)

9.02

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 4 cut(s) 10, 56, 151, 216
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 2 cut(s) 223, 313
AcuI CTGAAG 1 cut(s) 61
AcvI CACGTG 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 187, 235, 382
AgsI TTSAA 1 cut(s) 24
AluBI AGCT 4 cut(s) 127, 198, 202, 372
AluI AGCT 4 cut(s) 127, 198, 202, 372
Alw21I GWGCWC 2 cut(s) 106, 112
Alw26I GTCTC 1 cut(s) 233
Alw44I GTGCAC 2 cut(s) 102, 108
AlwI GGATC 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 234
ApaLI GTGCAC 2 cut(s) 102, 108
ApoI RAATTY 2 cut(s) 223, 313
AspLEI GCGC 1 cut(s) 330
AsuC2I CCSGG 2 cut(s) 235, 236
AsuNHI GCTAGC 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 234
BaeGI GKGCMC 2 cut(s) 106, 112
BbrPI CACGTG 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 106, 112
BccI CCATC 1 cut(s) 152
BcnI CCSGG 2 cut(s) 235, 236
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 199
BisI GCNGC 3 cut(s) 11, 151, 217
BlsI GCNGC 3 cut(s) 12, 152, 218
Bme1390I CCNGG 2 cut(s) 235, 236
BmeT110I CYCGRG 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 235, 236
BmsI GCATC 2 cut(s) 43, 267
BmtI GCTAGC 1 cut(s) 202
BpuMI CCSGG 2 cut(s) 235, 236
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 182, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 235, 382
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 182, 234
BseGI GGATG 3 cut(s) 58, 163, 353
BseLI CCNNNNNNNGG 3 cut(s) 187, 235, 382
BseMI GCAATG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 79
BseSI GKGCMC 2 cut(s) 106, 112
BseYI CCCAGC 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 106, 112
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 187, 235, 382
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 106, 112
Bsp143I GATC 1 cut(s) 341
BspACI CCGC 4 cut(s) 10, 56, 151, 216
BspOI GCTAGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 182, 234
BssMI GATC 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 186, 251
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 112, 200
BstF5I GGATG 3 cut(s) 58, 163, 353
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 1 cut(s) 344
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 233, 234
BstSLI GKGCMC 2 cut(s) 106, 112
BtsCI GGATG 3 cut(s) 58, 163, 353
BtsIMutI CAGTG 2 cut(s) 72, 280
Cac8I GCNNGC 2 cut(s) 112, 200
CfoI GCGC 1 cut(s) 330
Cfr9I CCCGGG 1 cut(s) 234
CseI GACGC 1 cut(s) 174
CviJI RGCY 6 cut(s) 94, 127, 132, 198, 202, 372
CviKI_1 RGCY 6 cut(s) 94, 127, 132, 198, 202, 372
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
Eam1104I CTCTTC 2 cut(s) 186, 251
EarI CTCTTC 2 cut(s) 186, 251
Eco130I CCWWGG 1 cut(s) 182
Eco32I GATATC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 61
Eco72I CACGTG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 234
EcoRV GATATC 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaiI YATR 3 cut(s) 212, 231, 389
FaqI GGGAC 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 11, 151, 217
FokI GGATG 3 cut(s) 65, 170, 360
Fsp4HI GCNGC 3 cut(s) 11, 151, 217
FspBI CTAG 1 cut(s) 199
GlaI GCGC 1 cut(s) 329
GluI GCNGC 3 cut(s) 11, 151, 217
GsaI CCCAGC 1 cut(s) 118
HapII CCGG 1 cut(s) 235
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 330
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HpaII CCGG 1 cut(s) 235
Hpy166II GTNNAC 3 cut(s) 104, 110, 164
Hpy188I TCNGA 2 cut(s) 157, 293
Hpy188III TCNNGA 3 cut(s) 39, 345, 376
Hpy8I GTNNAC 3 cut(s) 104, 110, 164
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 104, 110, 280, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 106
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 341
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 8 cut(s) 43, 52, 60, 100, 248, 307, 330, 389
LweI GCATC 2 cut(s) 43, 267
MaeI CTAG 1 cut(s) 199
MaeII ACGT 1 cut(s) 106
MalI GATC 1 cut(s) 343
MbiI CCGCTC 1 cut(s) 153
MboI GATC 1 cut(s) 341
MboII GAAGA 3 cut(s) 54, 203, 268
MhlI GDGCHC 2 cut(s) 106, 112
MluCI AATT 2 cut(s) 223, 313
MnlI CCTC 5 cut(s) 57, 180, 185, 344, 351
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 235, 236
Mva1269I GAATGC 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 327
NciI CCSGG 2 cut(s) 235, 236
NdeII GATC 1 cut(s) 341
NheI GCTAGC 1 cut(s) 198
PctI GAATGC 1 cut(s) 30
PkrI GCNGC 3 cut(s) 12, 152, 218
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 107
PspCI CACGTG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 114
SatI GCNGC 3 cut(s) 11, 151, 217
Sau3AI GATC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 235, 236
SduI GDGCHC 2 cut(s) 106, 112
SetI ASST 7 cut(s) 109, 129, 177, 200, 204, 362, 374
SfaNI GCATC 2 cut(s) 43, 267
SmaI CCCGGG 1 cut(s) 236
Sse9I AATT 2 cut(s) 223, 313
SsiI CCGC 4 cut(s) 10, 56, 151, 216
SspMI CTAG 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 233, 234
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 109
TasI AATT 2 cut(s) 223, 313
TauI GCSGC 3 cut(s) 13, 153, 219
TscAI CASTG 2 cut(s) 79, 287
TspMI CCCGGG 1 cut(s) 234
TspRI CASTG 2 cut(s) 79, 287
VneI GTGCAC 2 cut(s) 102, 108
XapI RAATTY 2 cut(s) 223, 313
XmaI CCCGGG 1 cut(s) 234
XspI CTAG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.