Rroxscaffold_1G00012320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008787
Physical Location & Seq
Forward (+)
15208596 .. 15209457
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012320.1

Sequence Viewer

Length: 489 bp
ATGACTTGGAAGCGGTATCAGCAGGCTCAAGCAGGTTACCAGGCGGCGAAATCGTTGAATGCCCAGAAGTTCTTGAAGAAAATAGGATGTGGCAAGGAGGACTACCACTTCTGGAAACAAATCGGCAAGGCTTTACTGTGCACGTACACACTGGGTGGAGTAGCTTGGCTCTACAATGAGAAGTCGCCGCTGGGATGGTGGACGCTGAAGCCTCGTCCCAAGGAAGAAAGAGAGCTGGCTCACTTGTATGAGCGGCGAGAGTTTCCATACCCGGGAGACGAAGAAGCAATGGAAGAGTTTGTGGCCAAGGGAGGTATGATTGGCACGACAATTGGTCCGAAAGGGTTCATTGAGACGGATAAAGATGCGCTGAACTATCAGAAAGAGTTGCAGAACAAGAAGTTTGAGCAGGAGGCTCAGAAGCTGTGGATCAGGATGAGGAATGAGGTGGTTTCGGAGCTTCAAGAGAAGGGCTACGATGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.99

Weight (kDa)

8.38

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 253
AciI CCGC 4 cut(s) 13, 44, 188, 253
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 3 cut(s) 58, 76, 464
AhdI GACNNNNNGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 4 cut(s) 164, 235, 424, 460
AluI AGCT 4 cut(s) 164, 235, 424, 460
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 270, 347
Alw44I GTGCAC 1 cut(s) 139
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 1 cut(s) 303
ApaLI GTGCAC 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 2 cut(s) 272, 273
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 2 cut(s) 272, 273
BcoDI GTCTC 2 cut(s) 270, 347
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 3 cut(s) 45, 188, 254
BlsI GCNGC 3 cut(s) 46, 189, 255
Bme1390I CCNGG 3 cut(s) 41, 272, 273
Bme18I GGWCC 1 cut(s) 335
BmeRI GACNNNNNGTC 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 335
BmrFI CCNGG 3 cut(s) 41, 272, 273
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 2 cut(s) 272, 273
BsaAI YACGTR 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 219, 271, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 3 cut(s) 219, 271, 306
BseGI GGATG 3 cut(s) 92, 200, 441
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 270, 347
BsmBI CGTCTC 2 cut(s) 270, 347
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 429
BspACI CCGC 4 cut(s) 13, 44, 188, 253
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 3 cut(s) 219, 271, 306
BssMI GATC 1 cut(s) 429
BssT1I CCWWGG 2 cut(s) 219, 306
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 24, 237
BstDEI CTNAG 1 cut(s) 417
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 3 cut(s) 92, 200, 441
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 2 cut(s) 270, 347
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 41
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 3 cut(s) 39, 270, 271
BstSLI GKGCMC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 3 cut(s) 92, 200, 441
BtsIMutI CAGTG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 24, 237
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 335
Cfr9I CCCGGG 1 cut(s) 271
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 145
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 417
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 155
DriI GACNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 219, 306
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 2 cut(s) 219, 306
ErhI CCWWGG 2 cut(s) 219, 306
Esp3I CGTCTC 2 cut(s) 270, 347
FaiI YATR 3 cut(s) 249, 268, 317
FaqI GGGAC 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 45, 188, 254
FokI GGATG 3 cut(s) 99, 207, 448
Fsp4HI GCNGC 3 cut(s) 45, 188, 254
GlaI GCGC 1 cut(s) 369
GluI GCNGC 3 cut(s) 45, 188, 254
GsaI CCCAGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 305
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 370
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HpaII CCGG 1 cut(s) 272
Hpy166II GTNNAC 3 cut(s) 141, 147, 201
Hpy188I TCNGA 4 cut(s) 339, 381, 420, 457
Hpy188III TCNNGA 4 cut(s) 73, 112, 433, 464
Hpy8I GTNNAC 3 cut(s) 141, 147, 201
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 141, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 143
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 457
LweI GCATC 1 cut(s) 355
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 431
MbiI CCGCTC 1 cut(s) 253
MboI GATC 1 cut(s) 429
MboII GAAGA 4 cut(s) 88, 236, 293, 305
MfeI CAATTG 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 1 cut(s) 330
MluNI TGGCCA 1 cut(s) 305
MnlI CCTC 6 cut(s) 91, 222, 305, 406, 432, 439
Mox20I TGGCCA 1 cut(s) 305
MroXI GAANNNNTTC 1 cut(s) 344
MscI TGGCCA 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 3 cut(s) 41, 272, 273
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 2 cut(s) 272, 273
NdeII GATC 1 cut(s) 429
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 344
PkrI GCNGC 3 cut(s) 46, 189, 255
Ppu21I YACGTR 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 39
PspEI GGTNACC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 39
PspPI GGNCC 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 424
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 3 cut(s) 45, 188, 254
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 1 cut(s) 335
ScrFI CCNGG 3 cut(s) 41, 272, 273
SduI GDGCHC 1 cut(s) 143
SetI ASST 8 cut(s) 37, 146, 166, 237, 316, 426, 450, 462
SfaNI GCATC 1 cut(s) 355
SinI GGWCC 1 cut(s) 335
SmaI CCCGGG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 1 cut(s) 330
SsiI CCGC 4 cut(s) 13, 44, 188, 253
StyD4I CCNGG 3 cut(s) 39, 270, 271
StyI CCWWGG 2 cut(s) 219, 306
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 146
TasI AATT 1 cut(s) 330
TauI GCSGC 3 cut(s) 47, 190, 256
TscAI CASTG 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 337
TspGWI ACGGA 1 cut(s) 371
TspMI CCCGGG 1 cut(s) 271
TspRI CASTG 1 cut(s) 156
VneI GTGCAC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 335
XmaI CCCGGG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.