Rorug05G0390200

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
53096946 .. 53098961
2016 bp
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UTR
Exon/CDS
Intron
Rorug05G0390200.1

Sequence Viewer

Length: 324 bp
ATGGACCATGGCCTTCGTCCCAGACAGAGGGAGTTCTTCATTGGCTTCACAAAGGGCCAGATGGAGAGTGGACAAATTGGTGAGGGAGTACGGAGAAGCAGTACTTGCCAAGAATTTTGTCAAAATTTGGCAAAAAGTTTTAATCACTCCGCTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGGTGCAAAATTGGTTCCAGGAAAGGATGCAAGAGTTACCAAACATATTAAAAGATCTCCAGGGATTTGCCCTTCCACTAAGGCACCTAAAAGCAAAGAAAAACCTAAAGTTCATAAAAGTACCGCAGTGGGAATGA

Protein Analysis

107

Amino Acids

12.5

Weight (kDa)

10.18

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 270
AciI CCGC 2 cut(s) 150, 311
AcsI RAATTY 2 cut(s) 113, 124
AfaI GTAC 3 cut(s) 90, 103, 309
AfiI CCNNNNNNNGG 1 cut(s) 27
AjnI CCWGG 2 cut(s) 204, 246
AoxI GGCC 2 cut(s) 10, 55
ApoI RAATTY 2 cut(s) 113, 124
AspS9I GGNCC 2 cut(s) 4, 55
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 270
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 206, 248
BglII AGATCT 1 cut(s) 241
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 206, 248
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 55
BmiI GGNNCC 2 cut(s) 203, 272
BmrFI CCNGG 2 cut(s) 206, 248
BmsI GCATC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 7, 247
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseBI CCWGG 2 cut(s) 206, 248
BseDI CCNNGG 2 cut(s) 7, 247
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 27
BshFI GGCC 2 cut(s) 12, 57
BshNI GGYRCC 1 cut(s) 270
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 3
BsnI GGCC 2 cut(s) 12, 57
Bsp143I GATC 1 cut(s) 241
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 2 cut(s) 150, 311
BspANI GGCC 2 cut(s) 12, 57
BspLI GGNNCC 2 cut(s) 203, 272
BspT107I GGYRCC 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 7, 247
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 206, 248
BstAPI GCANNNNNTGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 105, 158
BstNI CCWGG 2 cut(s) 206, 248
BstSCI CCNGG 2 cut(s) 204, 246
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 2 cut(s) 12, 57
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
Cfr13I GGNCC 2 cut(s) 4, 55
Csp6I GTAC 3 cut(s) 89, 102, 308
CviAII CATG 1 cut(s) 8
CviJI RGCY 3 cut(s) 12, 45, 57
CviKI_1 RGCY 3 cut(s) 12, 45, 57
CviQI GTAC 3 cut(s) 89, 102, 308
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 204, 246
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 1 cut(s) 11
FaiI YATR 3 cut(s) 9, 233, 302
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 3
FatI CATG 1 cut(s) 7
FokI GGATG 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 2 cut(s) 12, 57
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 184
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 23, 269
HpyCH4V TGCA 2 cut(s) 193, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 158
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 9 cut(s) 34, 71, 138, 147, 173, 191, 218, 233, 260
LweI GCATC 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 28
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 1 cut(s) 241
MluCI AATT 5 cut(s) 75, 113, 124, 171, 196
MnlI CCTC 2 cut(s) 21, 76
MseI TTAA 2 cut(s) 141, 236
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 206, 248
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 2 cut(s) 206, 248
MwoI GCNNNNNNNGC 2 cut(s) 105, 158
NcoI CCATGG 1 cut(s) 7
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 203, 272
PfeI GAWTC 1 cut(s) 184
PfoI TCCNGGA 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 204, 246
PspGI CCWGG 2 cut(s) 204, 246
PspN4I GGNNCC 2 cut(s) 203, 272
PspPI GGNCC 2 cut(s) 4, 55
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 3 cut(s) 90, 103, 309
RsaNI GTAC 3 cut(s) 89, 102, 308
SaqAI TTAA 2 cut(s) 141, 236
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 2 cut(s) 4, 55
ScaI AGTACT 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 206, 248
SetI ASST 3 cut(s) 192, 276, 294
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 1 cut(s) 4
Sse9I AATT 5 cut(s) 75, 113, 124, 171, 196
SsiI CCGC 2 cut(s) 150, 311
StyD4I CCNGG 2 cut(s) 204, 246
StyI CCWWGG 1 cut(s) 7
TasI AATT 5 cut(s) 75, 113, 124, 171, 196
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 2 cut(s) 141, 236
Tru9I TTAA 2 cut(s) 141, 236
TscAI CASTG 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 28, 289
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 113, 124
XcmI CCANNNNNNNNNTGG 2 cut(s) 65, 177
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.