Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Forward (+)

5107604 .. 5108676

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGATGAAGGTTCAGGATCCCATCTACCCCAAACCAAGAGAAATACTGGAGAAGAACAATGTGAAAGCGTCCACATATTGCATTCCATATGGTTCAGGTAGCCCAAAAATCGAAGTGGAAGGCATTACAGGAGCCAGATATATAGTTGATATTGAGAGAAGGACTTGTGCTTATAGGAGATGGACAAAGACATATTTGGCCATCTACTCAAACACTATCACCCTTGTAAATAGAATGGATCTTTGGGAAAGGACTGATGATGCTGCAATTCTTCCTCCCCAGTACAACAGACAGCCTGGTAGGCCAAAAACTAAGAGAATTAAGGATGCTTCAGAGAAAGCTACTAAGGGAACCAAGCTTGGAAGGGTACAGAAATCATTGAAGTGCAGTAACTGTGGGAATTTGGGGGACAATCTGAAGACCTATCATAGGCACTTGCCACCTAAGGAGAAGATGAGTGAAAAGAGGAAGCTAAACACTGGAGAGGGCACCTCATCTCAATCCCAGGCTAAGGGTACCAAAAAGCCTCCTTTGACAAAGAATGAGCTTAGGGCCAAAGTTAAACAAAGAGCAGAGAAGCTTAAGGGAATTTGTTGGGACTATGTGTTGGAATTATTATATGTTTTGAAAAAGAGGGATGCGCAGAAGGCAGCTGCTGCAAAATCAACCACTGCTAAAGCAACCACAAAGTCGAGCATTGCTTCAACCACTACACAAGCTGCTAGAGCAAACAGTAAAGCTTCTGCCTCTGCTTCTATAAAGTCTTCAACATCAATAAGGTCATCACAGAGGATTAGAGCTAGAAAGGAGGCTGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

273

Amino Acids

30.49

Weight (kDa)

10.22

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	642
Acc65I	GGTACC	1 cut(s)	515
AccB1I	GGYRCC	2 cut(s)	488, 515
AclWI	GGATC	3 cut(s)	11, 24, 246
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	400, 588
AcuI	CTGAAG	2 cut(s)	315, 437
AfaI	GTAC	3 cut(s)	284, 369, 517
AfiI	CCNNNNNNNGG	2 cut(s)	429, 511
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	382, 628, 705, 768
AjnI	CCWGG	2 cut(s)	295, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	9 cut(s)	341, 358, 472, 547, 580, 653, 719, 740, 800
AluI	AGCT	9 cut(s)	341, 358, 472, 547, 580, 653, 719, 740, 800
AlwI	GGATC	3 cut(s)	11, 24, 246
AlwNI	CAGNNNCTG	2 cut(s)	393, 656
AoxI	GGCC	3 cut(s)	198, 302, 552
ApeKI	GCWGC	6 cut(s)	263, 650, 653, 656, 719, 812
ApoI	RAATTY	2 cut(s)	400, 588
Asp718I	GGTACC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	2 cut(s)	488, 515
BbsI	GAAGAC	2 cut(s)	425, 756
BbvI	GCAGC	6 cut(s)	250, 640, 643, 662, 706, 799
BccI	CCATC	3 cut(s)	29, 174, 209
BciT130I	CCWGG	2 cut(s)	297, 506
BfaI	CTAG	2 cut(s)	723, 801
BfrI	CTTAAG	1 cut(s)	581
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	6 cut(s)	264, 651, 654, 657, 720, 813
BlsI	GCNGC	6 cut(s)	265, 652, 655, 658, 721, 814
Bme1390I	CCNGG	2 cut(s)	297, 506
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	5 cut(s)	18, 133, 352, 490, 517
BmrFI	CCNGG	2 cut(s)	297, 506
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	3 cut(s)	250, 316, 628
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	2 cut(s)	425, 756
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	2 cut(s)	68, 501
Bpu10I	CCTNAGC	2 cut(s)	510, 548
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 511
Bse1I	ACTGG	3 cut(s)	51, 280, 484
Bse21I	CCTNAGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	297, 506
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	331, 643
BseLI	CCNNNNNNNGG	2 cut(s)	429, 511
BseMI	GCAATG	1 cut(s)	696
BseNI	ACTGG	3 cut(s)	51, 280, 484
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	6 cut(s)	250, 640, 643, 662, 706, 799
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	3 cut(s)	200, 304, 554
BshNI	GGYRCC	2 cut(s)	488, 515
BslFI	GGGAC	2 cut(s)	422, 611
BslI	CCNNNNNNNGG	2 cut(s)	429, 511
BsmFI	GGGAC	2 cut(s)	422, 611
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	200, 304, 554
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	16, 238
BspANI	GGCC	3 cut(s)	200, 304, 554
BspLI	GGNNCC	5 cut(s)	18, 133, 352, 490, 517
BspPI	GGATC	3 cut(s)	11, 24, 246
BspT107I	GGYRCC	2 cut(s)	488, 515
BspTI	CTTAAG	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	51, 280, 484
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	2 cut(s)	16, 238
Bst2UI	CCWGG	2 cut(s)	297, 506
Bst4CI	ACNGT	2 cut(s)	395, 734
BstAFI	CTTAAG	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstDEI	CTNAG	5 cut(s)	312, 345, 444, 510, 548
BstENI	CCTNNNNNAGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	331, 643
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	2 cut(s)	19, 241
BstMBI	GATC	2 cut(s)	16, 238
BstMWI	GCNNNNNNNGC	4 cut(s)	301, 647, 656, 725
BstNI	CCWGG	2 cut(s)	297, 506
BstSCI	CCNGG	2 cut(s)	295, 504
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	6 cut(s)	250, 640, 643, 662, 706, 799
BstV2I	GAAGAC	2 cut(s)	425, 756
BstX2I	RGATCY	2 cut(s)	16, 238
BstYI	RGATCY	2 cut(s)	16, 238
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	200, 304, 554
BtsCI	GGATG	2 cut(s)	331, 643
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	2 cut(s)	477, 669
CaiI	CAGNNNCTG	2 cut(s)	393, 656
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	283, 368, 516
CviQI	GTAC	3 cut(s)	283, 368, 516
DdeI	CTNAG	5 cut(s)	312, 345, 444, 510, 548
DpnI	GATC	2 cut(s)	18, 240
DpnII	GATC	2 cut(s)	16, 238
EaeI	YGGCCR	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	315, 437
Eco81I	CCTNAGG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	295, 504
FaqI	GGGAC	2 cut(s)	422, 611
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	264, 651, 654, 657, 720, 813
FokI	GGATG	2 cut(s)	338, 650
Fsp4HI	GCNGC	6 cut(s)	264, 651, 654, 657, 720, 813
FspBI	CTAG	2 cut(s)	723, 801
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	6 cut(s)	264, 651, 654, 657, 720, 813
GsuI	CTGGAG	2 cut(s)	68, 501
HaeIII	GGCC	3 cut(s)	200, 304, 554
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	643
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HindIII	AAGCTT	3 cut(s)	356, 578, 738
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	2 cut(s)	334, 417
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	4 cut(s)	113, 153, 357, 640
HpyCH4III	ACNGT	2 cut(s)	395, 734
HpyCH4V	TGCA	5 cut(s)	81, 266, 387, 659, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	301, 647, 656, 725
HpyF3I	CTNAG	5 cut(s)	312, 345, 444, 510, 548
HspAI	GCGC	1 cut(s)	641
KpnI	GGTACC	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	16, 238
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	6 cut(s)	250, 640, 643, 662, 706, 799
LweI	GCATC	3 cut(s)	250, 316, 628
MaeI	CTAG	2 cut(s)	723, 801
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	2 cut(s)	18, 240
MboI	GATC	2 cut(s)	16, 238
MboII	GAAGA	5 cut(s)	64, 263, 430, 463, 756
MflI	RGATCY	2 cut(s)	16, 238
MhlI	GDGCHC	1 cut(s)	491
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	5 cut(s)	267, 318, 400, 588, 611
MluNI	TGGCCA	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	9 cut(s)	285, 459, 478, 502, 537, 627, 757, 783, 802
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	3 cut(s)	321, 561, 582
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	653
MspCI	CTTAAG	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	297, 506
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	297, 506
MwoI	GCNNNNNNNGC	4 cut(s)	301, 647, 656, 725
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	2 cut(s)	16, 238
NlaIV	GGNNCC	5 cut(s)	18, 133, 352, 490, 517
NsbI	TGCGCA	1 cut(s)	642
PctI	GAATGC	1 cut(s)	81
PkrI	GCNGC	6 cut(s)	265, 652, 655, 658, 721, 814
Psp6I	CCWGG	2 cut(s)	295, 504
PspGI	CCWGG	2 cut(s)	295, 504
PspN4I	GGNNCC	5 cut(s)	18, 133, 352, 490, 517
PspPI	GGNCC	1 cut(s)	552
PstNI	CAGNNNCTG	2 cut(s)	393, 656
PsuI	RGATCY	2 cut(s)	16, 238
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	3 cut(s)	284, 369, 517
RsaNI	GTAC	3 cut(s)	283, 368, 516
RseI	CAYNNNNRTG	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	321, 561, 582
SatI	GCNGC	6 cut(s)	264, 651, 654, 657, 720, 813
Sau3AI	GATC	2 cut(s)	16, 238
Sau96I	GGNCC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	297, 506
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	3 cut(s)	250, 316, 628
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	5 cut(s)	267, 318, 400, 588, 611
SspMI	CTAG	2 cut(s)	723, 801
StyD4I	CCNGG	2 cut(s)	295, 504
TaaI	ACNGT	2 cut(s)	395, 734
TaqI	TCGA	2 cut(s)	111, 692
TasI	AATT	5 cut(s)	267, 318, 400, 588, 611
TatI	WGTACW	1 cut(s)	282
Tru1I	TTAA	3 cut(s)	321, 561, 582
Tru9I	TTAA	3 cut(s)	321, 561, 582
TscAI	CASTG	2 cut(s)	484, 676
TseI	GCWGC	6 cut(s)	263, 650, 653, 656, 719, 812
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	484, 676
Vha464I	CTTAAG	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	427
XapI	RAATTY	2 cut(s)	400, 588
XspI	CTAG	2 cut(s)	723, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.