Rmu_sc0000313.1_g000001

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000313.1
Physical Location & Seq
Reverse (-)
2080 .. 7348
5269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000313.1_g000001.1.cds

Sequence Viewer

Length: 1416 bp
atgggagaagatgatgtgtacacaaaagatgggagggttgtacccattgcagaagatgaggaagtcaccaaagatgggacagtggattacaaaggaaacccagctaacaaaaaagtcacaggaacctggaaagcctgcccttttatcctggggactgaatgctgtgaaagattggcatactatgggatgagctcaaatctgatcacttatttcaagggacatctgcaccaaagcagtgctaaagcagctaagagcaactcaaattggagtggaacatgttatctcactcccttacttggagcatttttggctgatgcttatttgggaagatataagactattgcctttttctcagtcatctatgtcattgggatgacacttttgacattgtcagcatcaatcccaggcatgaagccaacctgtgtttcaaaagatgattgctatgcaaacagtggacaaactgcagcatgcttcatagctctttaccttatagcattggggactggtggaattaagccatgtgtctcatcctatggagcagaccagtttgatgatgatgatgaggttgagaagaagcacaaaggttctttcttcaactggttctatttttccatcaatgttggtgctttgattgcgagttctgtgctggtgtgggttcaaatgaatgaaggttggtcatggggttttggcataccagcagttgccatggcaattgctgtagtgagtttcttttcgggtactcggttatataggaatcagcagccaggaggtagcccgctgacccgaataattcaggtgctggtggcatctgtgagaaaacacaaagtcatagtacccgaagacaagtcccttttgtatgagatcgccgatgcagagtctgtcatcaaaggaagccgcaagctggatcacacaaatgaatttagtttctttgacaaagcagctgttgaggaaccaacagaccatataaaggactcgatagacccatggagacttgctacagttacccaagtggaggagctaaagtcaattataaggttacttcctgtttgggccactggtattatctttgctgcagtctacaatcagatgagcaacttctttgtgttgcaaggcacccttatggatcttcatgttggcaagtcctcctttgaaattccggcagcctccctctcagtttttgaccccctcagtgtcattatatgggtcccaatatatgaccaattcattgtcccatttgcaaggagattcacaggccacaagaatggcctaactacactgcaaagaatgggaattggtctcttcatttccatcttctccatgaataagaaatttgagcaggaagcgcagaagttgtggatcaagatgaggaatgaggtcattttggagcttccagataagggttatgatgttgagtga

Protein Analysis

471

Amino Acids

52.3

Weight (kDa)

6.12

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 1112
AccI GTMKAC 1 cut(s) 1077
AciI CCGC 2 cut(s) 776, 895
AclWI GGATC 3 cut(s) 912, 1131, 1364
AcsI RAATTY 3 cut(s) 917, 1152, 1328
AfaI GTAC 4 cut(s) 20, 42, 739, 834
AfiI CCNNNNNNNGG 6 cut(s) 75, 296, 901, 967, 1012, 1397
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 5 cut(s) 214, 429, 595, 659, 1151
AjnI CCWGG 4 cut(s) 125, 147, 403, 763
AjuI GAANNNNNNNTTGG 2 cut(s) 409, 441
AluBI AGCT 8 cut(s) 104, 192, 248, 479, 901, 941, 1018, 1387
AluI AGCT 8 cut(s) 104, 192, 248, 479, 901, 941, 1018, 1387
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 3 cut(s) 529, 982, 1301
AlwI GGATC 3 cut(s) 912, 1131, 1364
AlwNI CAGNNNCTG 2 cut(s) 799, 878
AoxI GGCC 3 cut(s) 1050, 1252, 1264
ApeKI GCWGC 6 cut(s) 245, 464, 760, 938, 1070, 1160
ApoI RAATTY 3 cut(s) 917, 1152, 1328
AspLEI GCGC 1 cut(s) 1345
AspS9I GGNCC 2 cut(s) 1050, 1204
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 1204
BanI GGYRCC 1 cut(s) 1112
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 6 cut(s) 257, 476, 772, 950, 1057, 1172
BccI CCATC 4 cut(s) 23, 68, 620, 1316
BcgI CGANNNNNNTGC 2 cut(s) 625, 659
BciT130I CCWGG 4 cut(s) 127, 149, 405, 765
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 3 cut(s) 529, 982, 1301
BfmI CTRYAG 4 cut(s) 462, 717, 996, 1071
BisI GCNGC 7 cut(s) 246, 465, 761, 895, 939, 1071, 1161
BlsI GCNGC 7 cut(s) 247, 466, 762, 896, 940, 1072, 1162
Bme1390I CCNGG 4 cut(s) 127, 149, 405, 765
Bme18I GGWCC 1 cut(s) 1204
BmgT120I GGNCC 2 cut(s) 1050, 1204
BmiI GGNNCC 5 cut(s) 124, 951, 1114, 1205, 1206
BmrFI CCNGG 4 cut(s) 127, 149, 405, 765
BmsI GCATC 4 cut(s) 304, 404, 815, 859
BpiI GAAGAC 1 cut(s) 846
BsaI GGTCTC 1 cut(s) 1301
BsaJI CCNNGG 4 cut(s) 148, 403, 705, 983
BsaXI ACNNNNNCTCC 2 cut(s) 1007, 1037
Bsc4I CCNNNNNNNGG 6 cut(s) 75, 296, 901, 967, 1012, 1397
Bse1I ACTGG 4 cut(s) 508, 544, 602, 1060
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 4 cut(s) 127, 149, 405, 765
BseDI CCNNGG 4 cut(s) 148, 403, 705, 983
BseGI GGATG 3 cut(s) 192, 378, 527
BseLI CCNNNNNNNGG 6 cut(s) 75, 296, 901, 967, 1012, 1397
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 3 cut(s) 366, 1185, 1201
BseNI ACTGG 4 cut(s) 508, 544, 602, 1060
BseRI GAGGAG 1 cut(s) 1028
BseXI GCAGC 6 cut(s) 257, 476, 772, 950, 1057, 1172
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 209
BshFI GGCC 3 cut(s) 1052, 1254, 1266
BshNI GGYRCC 1 cut(s) 1112
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 1157
BslFI GGGAC 7 cut(s) 91, 166, 231, 514, 832, 1190, 1214
BslI CCNNNNNNNGG 6 cut(s) 75, 296, 901, 967, 1012, 1397
BsmAI GTCTC 3 cut(s) 529, 982, 1301
BsmFI GGGAC 7 cut(s) 91, 166, 231, 514, 832, 1190, 1214
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 3 cut(s) 1052, 1254, 1266
Bso31I GGTCTC 1 cut(s) 1301
Bsp1286I GDGCHC 1 cut(s) 194
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 5 cut(s) 201, 861, 904, 1123, 1356
Bsp19I CCATGG 2 cut(s) 705, 983
BspACI CCGC 2 cut(s) 776, 895
BspANI GGCC 3 cut(s) 1052, 1254, 1266
BspCNI CTCAG 3 cut(s) 365, 1184, 1200
BspLI GGNNCC 5 cut(s) 124, 951, 1114, 1205, 1206
BspMAI CTGCAG 2 cut(s) 466, 1075
BspPI GGATC 3 cut(s) 912, 1131, 1364
BspT107I GGYRCC 1 cut(s) 1112
BspTNI GGTCTC 1 cut(s) 1301
BsrDI GCAATG 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 4 cut(s) 508, 544, 602, 1060
BssECI CCNNGG 4 cut(s) 148, 403, 705, 983
BssMI GATC 5 cut(s) 201, 861, 904, 1123, 1356
BssT1I CCWWGG 2 cut(s) 705, 983
Bst2UI CCWGG 4 cut(s) 127, 149, 405, 765
Bst4CI ACNGT 3 cut(s) 82, 452, 1000
Bst6I CTCTTC 1 cut(s) 1304
BstAUI TGTACA 1 cut(s) 18
BstC8I GCNNGC 4 cut(s) 136, 469, 776, 899
BstDEI CTNAG 4 cut(s) 249, 352, 1171, 1187
BstDSI CCRYGG 2 cut(s) 705, 983
BstF5I GGATG 3 cut(s) 192, 378, 527
BstHHI GCGC 1 cut(s) 1345
BstKTI GATC 5 cut(s) 204, 864, 907, 1126, 1359
BstMAI GTCTC 3 cut(s) 529, 982, 1301
BstMBI GATC 5 cut(s) 201, 861, 904, 1123, 1356
BstMWI GCNNNNNNNGC 4 cut(s) 245, 308, 632, 1342
BstNI CCWGG 4 cut(s) 127, 149, 405, 765
BstNSI RCATGY 2 cut(s) 279, 471
BstSCI CCNGG 4 cut(s) 125, 147, 403, 763
BstSFI CTRYAG 4 cut(s) 462, 717, 996, 1071
BstV1I GCAGC 6 cut(s) 257, 476, 772, 950, 1057, 1172
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 1123
BstXI CCANNNNNNTGG 1 cut(s) 1262
BstYI RGATCY 1 cut(s) 1123
BsuRI GGCC 3 cut(s) 1052, 1254, 1266
BtgI CCRYGG 2 cut(s) 705, 983
BtsCI GGATG 3 cut(s) 192, 378, 527
BtsI GCAGTG 2 cut(s) 241, 1274
BtsIMutI CAGTG 6 cut(s) 87, 241, 457, 1053, 1195, 1274
Cac8I GCNNGC 4 cut(s) 136, 469, 776, 899
CaiI CAGNNNCTG 2 cut(s) 799, 878
CfoI GCGC 1 cut(s) 1345
Cfr13I GGNCC 2 cut(s) 1050, 1204
Csp6I GTAC 4 cut(s) 19, 41, 738, 833
CviAII CATG 9 cut(s) 276, 409, 468, 519, 678, 706, 984, 1130, 1318
CviQI GTAC 4 cut(s) 19, 41, 738, 833
DdeI CTNAG 4 cut(s) 249, 352, 1171, 1187
DpnI GATC 5 cut(s) 203, 863, 906, 1125, 1358
DpnII GATC 5 cut(s) 201, 861, 904, 1123, 1356
Eam1104I CTCTTC 1 cut(s) 1304
EarI CTCTTC 1 cut(s) 1304
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 705, 983
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 1301
Eco47I GGWCC 1 cut(s) 1204
Eco53kI GAGCTC 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 1204
EcoRII CCWGG 4 cut(s) 125, 147, 403, 763
EcoT14I CCWWGG 2 cut(s) 705, 983
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 2 cut(s) 705, 983
FaeI CATG 9 cut(s) 279, 412, 471, 522, 681, 709, 987, 1133, 1321
FalI AAGNNNNNCTT 4 cut(s) 1101, 1133, 1130, 1162
FaqI GGGAC 7 cut(s) 91, 166, 231, 514, 832, 1190, 1214
FatI CATG 9 cut(s) 275, 408, 467, 518, 677, 705, 983, 1129, 1317
FauI CCCGC 1 cut(s) 783
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 1077
Fnu4HI GCNGC 7 cut(s) 246, 465, 761, 895, 939, 1071, 1161
FokI GGATG 3 cut(s) 199, 385, 514
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 7 cut(s) 246, 465, 761, 895, 939, 1071, 1161
GlaI GCGC 1 cut(s) 1344
GluI GCNGC 7 cut(s) 246, 465, 761, 895, 939, 1071, 1161
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 3 cut(s) 1052, 1254, 1266
HapII CCGG 1 cut(s) 1157
HhaI GCGC 1 cut(s) 1345
Hin1II CATG 9 cut(s) 279, 412, 471, 522, 681, 709, 987, 1133, 1321
Hin6I GCGC 1 cut(s) 1343
HinP1I GCGC 1 cut(s) 1343
HinfI GANTC 4 cut(s) 754, 875, 971, 1245
HpaII CCGG 1 cut(s) 1157
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 4 cut(s) 19, 21, 455, 1078
Hpy188I TCNGA 2 cut(s) 201, 1086
Hpy188III TCNNGA 2 cut(s) 1360, 1391
Hpy8I GTNNAC 4 cut(s) 19, 21, 455, 1078
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 3 cut(s) 82, 452, 1000
HpyCH4V TGCA 9 cut(s) 50, 226, 446, 464, 872, 1073, 1108, 1238, 1279
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 308, 632, 1342
HpyF3I CTNAG 4 cut(s) 249, 352, 1171, 1187
Hsp92II CATG 9 cut(s) 279, 412, 471, 522, 681, 709, 987, 1133, 1321
HspAI GCGC 1 cut(s) 1343
KflI GGGWCCC 1 cut(s) 1204
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 5 cut(s) 201, 861, 904, 1123, 1356
LmnI GCTCC 4 cut(s) 299, 536, 1015, 1384
Lsp1109I GCAGC 6 cut(s) 257, 476, 772, 950, 1057, 1172
LweI GCATC 4 cut(s) 304, 404, 815, 859
MaeIII GTNAC 4 cut(s) 64, 115, 1000, 1035
MalI GATC 5 cut(s) 203, 863, 906, 1125, 1358
MboI GATC 5 cut(s) 201, 861, 904, 1123, 1356
MboII GAAGA 9 cut(s) 20, 65, 339, 583, 583, 851, 1118, 1291, 1303
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 1123
MhlI GDGCHC 1 cut(s) 194
MlyI GAGTC 2 cut(s) 884, 965
MseI TTAA 1 cut(s) 513
MslI CAYNNNNRTG 4 cut(s) 371, 912, 1118, 1260
MspA1I CMGCKG 2 cut(s) 778, 941
MspI CCGG 1 cut(s) 1157
MspR9I CCNGG 4 cut(s) 127, 149, 405, 765
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 4 cut(s) 127, 149, 405, 765
MwoI GCNNNNNNNGC 4 cut(s) 245, 308, 632, 1342
NcoI CCATGG 2 cut(s) 705, 983
NdeII GATC 5 cut(s) 201, 861, 904, 1123, 1356
NlaIII CATG 9 cut(s) 279, 412, 471, 522, 681, 709, 987, 1133, 1321
NlaIV GGNNCC 5 cut(s) 124, 951, 1114, 1205, 1206
NmuCI GTSAC 2 cut(s) 64, 115
NspI RCATGY 2 cut(s) 279, 471
PaeI GCATGC 1 cut(s) 471
PciI ACATGT 1 cut(s) 275
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 754, 1245
PflFI GACNNNGTC 1 cut(s) 388
PkrI GCNGC 7 cut(s) 247, 466, 762, 896, 940, 1072, 1162
PleI GAGTC 2 cut(s) 883, 965
PpsI GAGTC 2 cut(s) 883, 965
PpuMI RGGWCCY 1 cut(s) 1204
PscI ACATGT 1 cut(s) 275
PsiI TTATAA 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 1204
Psp6I CCWGG 4 cut(s) 125, 147, 403, 763
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 4 cut(s) 125, 147, 403, 763
PspN4I GGNNCC 5 cut(s) 124, 951, 1114, 1205, 1206
PspPI GGNCC 2 cut(s) 1050, 1204
PspPPI RGGWCCY 1 cut(s) 1204
PstI CTGCAG 2 cut(s) 466, 1075
PstNI CAGNNNCTG 2 cut(s) 799, 878
PsuI RGATCY 1 cut(s) 1123
PsyI GACNNNGTC 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 4 cut(s) 20, 42, 739, 834
RsaNI GTAC 4 cut(s) 19, 41, 738, 833
RseI CAYNNNNRTG 4 cut(s) 371, 912, 1118, 1260
SacI GAGCTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 7 cut(s) 246, 465, 761, 895, 939, 1071, 1161
Sau3AI GATC 5 cut(s) 201, 861, 904, 1123, 1356
Sau96I GGNCC 2 cut(s) 1050, 1204
SchI GAGTC 2 cut(s) 884, 965
ScrFI CCNGG 4 cut(s) 127, 149, 405, 765
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 4 cut(s) 304, 404, 815, 859
SfcI CTRYAG 4 cut(s) 462, 717, 996, 1071
SinI GGWCC 1 cut(s) 1204
SmiMI CAYNNNNRTG 4 cut(s) 371, 912, 1118, 1260
SphI GCATGC 1 cut(s) 471
SsiI CCGC 2 cut(s) 776, 895
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 4 cut(s) 125, 147, 403, 763
StyI CCWWGG 2 cut(s) 705, 983
TaaI ACNGT 3 cut(s) 82, 452, 1000
TaqI TCGA 1 cut(s) 974
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 897
TfiI GAWTC 2 cut(s) 754, 1245
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 6 cut(s) 87, 241, 457, 1060, 1195, 1281
TseFI GTSAC 2 cut(s) 64, 115
TseI GCWGC 6 cut(s) 245, 464, 760, 938, 1070, 1160
Tsp45I GTSAC 2 cut(s) 64, 115
TspDTI ATGAA 9 cut(s) 425, 463, 677, 681, 930, 1118, 1213, 1291, 1334
TspRI CASTG 6 cut(s) 87, 241, 457, 1060, 1195, 1281
Tth111I GACNNNGTC 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 1204
XapI RAATTY 3 cut(s) 917, 1152, 1328
XceI RCATGY 2 cut(s) 279, 471
XmiI GTMKAC 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.