Rmu_sc0005087.1_g000011

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005087.1
Physical Location & Seq
Reverse (-)
39392 .. 40921
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005087.1_g000011.1.cds

Sequence Viewer

Length: 1332 bp
atgggagaagatgatgtgtgtacaaaagatgggagggttgaacccattgcagcagatgatgatgtatacaccaaagatgggacagtggattacaaaggaaacccagctaataaaaaagtcacaggaacctggagagcctgcccttttatcttagggactgaatgctgtgaaagattggcattctatgggatgagctcaaatctggtctattatttcaagtatcatctgaagcaaagcagtgctaaagcagctaagagcaactcaaattggaatggaacatgttatattgctgtagtgagtttcttttcgggtactcggttatataggaatcagaagccaggaggtagcccgctgacccgaataattcaggtgctggtggcatctgtgagaaaatacaaagtcatagtacctgaagacaagtctcttttgtatgaaatcgctgatgcagagtctgtcatcaaaggaagccgcaagctggatcacacaaatgaatttagtttctttgacaaagcagctgttgaggaaccaacagaccatataaaggactcgatagacccatggagacttgctacagttacccaagtggaggagctaaagtcaattataaggttacttcctgtttgggccactggtattatctttgctgcagtctacaatcagatgagcaacttctttgtgttgcaaggcacccttatggatcttcatgttggcaagtcctcctttgaaattccggcagcctccctctcagtttttgaccccctcagtgtcattatatgggtcccaatatatgaccaattcattgttccatttgcaaggaaattcacaggtcacaggaatggcctaactacactgcaaagaatgggaattggtctcttcatttccatcttctccatggtatgtgctgcggttttggaactcatcagactccgaagcgttaaagagaacaactactatgattgggaacacatgcccatgtcagttttctggcagtctcctcagtatttcatcataggtgctgcagaagtgttcactttcatcggacagttggattttttctatgatcaagcaccggacgcaatgagaagcttgtgttctgctctctcactctccactgttgcactaggaagctacttcaactctctgctggtgaccattgttaccaatgtgactacaaagaacaacaagctagggtggataccagacaatctgaactacggtcaccttgattatttcttctggatgttggcagtgctgagtattctcaaccttggagcttttctattgattgcccagtggtacacatacaaaaagacggtgggatctatccgttga

Protein Analysis

443

Amino Acids

49.99

Weight (kDa)

7.56

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AccB1I GGYRCC 1 cut(s) 686
AccI GTMKAC 2 cut(s) 66, 651
AciI CCGC 3 cut(s) 350, 469, 905
AclWI GGATC 3 cut(s) 486, 705, 1327
AcsI RAATTY 3 cut(s) 491, 726, 818
AcuI CTGAAG 2 cut(s) 248, 432
AfaI GTAC 4 cut(s) 22, 313, 408, 1298
AfiI CCNNNNNNNGG 4 cut(s) 78, 475, 541, 586
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 4 cut(s) 41, 217, 725, 1135
AjnI CCWGG 2 cut(s) 128, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 786, 818
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 4 cut(s) 426, 556, 875, 996
AlwI GGATC 3 cut(s) 486, 705, 1327
AlwNI CAGNNNCTG 2 cut(s) 373, 452
AoxI GGCC 2 cut(s) 624, 838
ApeKI GCWGC 7 cut(s) 50, 248, 512, 644, 734, 902, 1016
ApoI RAATTY 3 cut(s) 491, 726, 818
AspS9I GGNCC 2 cut(s) 624, 778
AsuHPI GGTGA 2 cut(s) 1159, 1211
AvaII GGWCC 1 cut(s) 778
BanI GGYRCC 1 cut(s) 686
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 7 cut(s) 62, 260, 524, 631, 746, 889, 1003
BccI CCATC 3 cut(s) 23, 71, 890
BciT130I CCWGG 2 cut(s) 130, 339
BciVI GTATCC 1 cut(s) 1188
BclI TGATCA 1 cut(s) 1060
BcoDI GTCTC 4 cut(s) 426, 556, 875, 996
BfaI CTAG 2 cut(s) 1121, 1187
BfmI CTRYAG 4 cut(s) 291, 570, 645, 1017
BfuI GTATCC 1 cut(s) 1188
BisI GCNGC 8 cut(s) 51, 249, 469, 513, 645, 735, 903, 1017
BlsI GCNGC 8 cut(s) 52, 250, 470, 514, 646, 736, 904, 1018
Bme1390I CCNGG 2 cut(s) 130, 339
Bme18I GGWCC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 624, 778
BmiI GGNNCC 5 cut(s) 127, 525, 688, 779, 780
BmrFI CCNGG 2 cut(s) 130, 339
BmrI ACTGGG 1 cut(s) 1285
BmsI GCATC 2 cut(s) 389, 433
BmuI ACTGGG 1 cut(s) 1285
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 3 cut(s) 557, 891, 1267
BsaWI WCCGGW 1 cut(s) 1069
BsaXI ACNNNNNCTCC 2 cut(s) 581, 611
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 475, 541, 586
Bse1I ACTGG 2 cut(s) 634, 1291
Bse3DI GCAATG 2 cut(s) 45, 1083
BseBI CCWGG 2 cut(s) 130, 339
BseDI CCNNGG 3 cut(s) 557, 891, 1267
BseGI GGATG 2 cut(s) 195, 1245
BseLI CCNNNNNNNGG 4 cut(s) 78, 475, 541, 586
BseMI GCAATG 2 cut(s) 45, 1083
BseMII CTCAG 4 cut(s) 759, 775, 1010, 1244
BseNI ACTGG 2 cut(s) 634, 1291
BseRI GAGGAG 2 cut(s) 602, 984
BseXI GCAGC 7 cut(s) 62, 260, 524, 631, 746, 889, 1003
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 2 cut(s) 626, 840
BshNI GGYRCC 1 cut(s) 686
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 2 cut(s) 731, 1070
BslFI GGGAC 3 cut(s) 94, 169, 764
BslI CCNNNNNNNGG 4 cut(s) 78, 475, 541, 586
BsmAI GTCTC 4 cut(s) 426, 556, 875, 996
BsmFI GGGAC 3 cut(s) 94, 169, 764
BsmI GAATGC 2 cut(s) 167, 179
BsnI GGCC 2 cut(s) 626, 840
Bso31I GGTCTC 1 cut(s) 875
Bsp1286I GDGCHC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 4 cut(s) 478, 697, 1060, 1319
Bsp19I CCATGG 2 cut(s) 557, 891
BspACI CCGC 3 cut(s) 350, 469, 905
BspANI GGCC 2 cut(s) 626, 840
BspCNI CTCAG 4 cut(s) 758, 774, 1009, 1245
BspLI GGNNCC 5 cut(s) 127, 525, 688, 779, 780
BspMAI CTGCAG 2 cut(s) 649, 1021
BspPI GGATC 3 cut(s) 486, 705, 1327
BspT107I GGYRCC 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 875
BsrDI GCAATG 2 cut(s) 45, 1083
BsrGI TGTACA 1 cut(s) 20
BsrI ACTGG 2 cut(s) 634, 1291
BssECI CCNNGG 3 cut(s) 557, 891, 1267
BssMI GATC 4 cut(s) 478, 697, 1060, 1319
BssNAI GTATAC 1 cut(s) 67
BssT1I CCWWGG 3 cut(s) 557, 891, 1267
Bst1107I GTATAC 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 130, 339
Bst4CI ACNGT 6 cut(s) 85, 574, 1044, 1114, 1217, 1315
Bst6I CTCTTC 1 cut(s) 878
BstAUI TGTACA 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 139, 350, 473
BstDEI CTNAG 6 cut(s) 151, 252, 745, 761, 996, 1253
BstDSI CCRYGG 2 cut(s) 557, 891
BstEII GGTNACC 2 cut(s) 1147, 1217
BstF5I GGATG 2 cut(s) 195, 1245
BstKTI GATC 4 cut(s) 481, 700, 1063, 1322
BstMAI GTCTC 4 cut(s) 426, 556, 875, 996
BstMBI GATC 4 cut(s) 478, 697, 1060, 1319
BstMWI GCNNNNNNNGC 2 cut(s) 248, 1073
BstNI CCWGG 2 cut(s) 130, 339
BstNSI RCATGY 2 cut(s) 282, 970
BstPI GGTNACC 2 cut(s) 1147, 1217
BstSCI CCNGG 2 cut(s) 128, 337
BstSFI CTRYAG 4 cut(s) 291, 570, 645, 1017
BstV1I GCAGC 7 cut(s) 62, 260, 524, 631, 746, 889, 1003
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 2 cut(s) 697, 1319
BstYI RGATCY 2 cut(s) 697, 1319
BstZ17I GTATAC 1 cut(s) 67
BsuI GTATCC 1 cut(s) 1188
BsuRI GGCC 2 cut(s) 626, 840
BtgI CCRYGG 2 cut(s) 557, 891
BtsCI GGATG 2 cut(s) 195, 1245
BtsI GCAGTG 3 cut(s) 244, 848, 1254
BtsIMutI CAGTG 8 cut(s) 90, 244, 627, 769, 848, 1110, 1254, 1298
Cac8I GCNNGC 3 cut(s) 139, 350, 473
CaiI CAGNNNCTG 2 cut(s) 373, 452
Cfr13I GGNCC 2 cut(s) 624, 778
CseI GACGC 1 cut(s) 1082
Csp6I GTAC 4 cut(s) 21, 312, 407, 1297
CviAII CATG 6 cut(s) 279, 558, 704, 892, 967, 973
CviQI GTAC 4 cut(s) 21, 312, 407, 1297
DdeI CTNAG 6 cut(s) 151, 252, 745, 761, 996, 1253
DpnI GATC 4 cut(s) 480, 699, 1062, 1321
DpnII GATC 4 cut(s) 478, 697, 1060, 1319
Eam1104I CTCTTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 878
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 3 cut(s) 557, 891, 1267
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 875
Eco47I GGWCC 1 cut(s) 778
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 248, 432
Eco91I GGTNACC 2 cut(s) 1147, 1217
EcoICRI GAGCTC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 778
EcoO65I GGTNACC 2 cut(s) 1147, 1217
EcoRII CCWGG 2 cut(s) 128, 337
EcoT14I CCWWGG 3 cut(s) 557, 891, 1267
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 3 cut(s) 557, 891, 1267
FaeI CATG 6 cut(s) 282, 561, 707, 895, 970, 976
FalI AAGNNNNNCTT 4 cut(s) 675, 707, 704, 736
FaqI GGGAC 3 cut(s) 94, 169, 764
FatI CATG 6 cut(s) 278, 557, 703, 891, 966, 972
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 1060
FblI GTMKAC 2 cut(s) 66, 651
Fnu4HI GCNGC 8 cut(s) 51, 249, 469, 513, 645, 735, 903, 1017
FokI GGATG 2 cut(s) 202, 1252
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 8 cut(s) 51, 249, 469, 513, 645, 735, 903, 1017
FspBI CTAG 2 cut(s) 1121, 1187
GluI GCNGC 8 cut(s) 51, 249, 469, 513, 645, 735, 903, 1017
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 2 cut(s) 626, 840
HapII CCGG 2 cut(s) 731, 1070
HgaI GACGC 1 cut(s) 1082
Hin1II CATG 6 cut(s) 282, 561, 707, 895, 970, 976
HindIII AAGCTT 1 cut(s) 1084
HinfI GANTC 4 cut(s) 328, 449, 545, 924
HpaII CCGG 2 cut(s) 731, 1070
HphI GGTGA 2 cut(s) 1159, 1211
Hpy166II GTNNAC 5 cut(s) 21, 67, 652, 1029, 1299
Hpy188I TCNGA 7 cut(s) 228, 333, 660, 923, 929, 1040, 1209
Hpy188III TCNNGA 1 cut(s) 1237
Hpy8I GTNNAC 5 cut(s) 21, 67, 652, 1029, 1299
HpyCH4III ACNGT 6 cut(s) 85, 574, 1044, 1114, 1217, 1315
HpyCH4V TGCA 8 cut(s) 50, 446, 647, 682, 812, 853, 1019, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 1073
HpyF3I CTNAG 6 cut(s) 151, 252, 745, 761, 996, 1253
Hsp92II CATG 6 cut(s) 282, 561, 707, 895, 970, 976
KflI GGGWCCC 1 cut(s) 778
Ksp22I TGATCA 1 cut(s) 1060
Kzo9I GATC 4 cut(s) 478, 697, 1060, 1319
LmnI GCTCC 2 cut(s) 589, 1271
Lsp1109I GCAGC 7 cut(s) 62, 260, 524, 631, 746, 889, 1003
LweI GCATC 2 cut(s) 389, 433
MaeI CTAG 2 cut(s) 1121, 1187
MaeIII GTNAC 8 cut(s) 118, 574, 609, 827, 1147, 1156, 1165, 1217
MalI GATC 4 cut(s) 480, 699, 1062, 1321
MboI GATC 4 cut(s) 478, 697, 1060, 1319
MboII GAAGA 6 cut(s) 20, 425, 692, 865, 877, 1225
MflI RGATCY 2 cut(s) 697, 1319
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 8 cut(s) 265, 363, 491, 600, 726, 794, 818, 864
MlyI GAGTC 3 cut(s) 458, 539, 918
MmeI TCCRAC 1 cut(s) 1026
MnlI CCTC 9 cut(s) 27, 335, 514, 580, 727, 748, 752, 770, 1005
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 4 cut(s) 486, 692, 834, 971
MspA1I CMGCKG 2 cut(s) 352, 515
MspI CCGG 2 cut(s) 731, 1070
MspR9I CCNGG 2 cut(s) 130, 339
Mva1269I GAATGC 2 cut(s) 167, 179
MvaI CCWGG 2 cut(s) 130, 339
MwoI GCNNNNNNNGC 2 cut(s) 248, 1073
NcoI CCATGG 2 cut(s) 557, 891
NdeII GATC 4 cut(s) 478, 697, 1060, 1319
NlaIII CATG 6 cut(s) 282, 561, 707, 895, 970, 976
NlaIV GGNNCC 5 cut(s) 127, 525, 688, 779, 780
NmuCI GTSAC 5 cut(s) 118, 827, 1147, 1165, 1217
NspI RCATGY 2 cut(s) 282, 970
PciI ACATGT 1 cut(s) 278
PctI GAATGC 2 cut(s) 167, 179
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 8 cut(s) 52, 250, 470, 514, 646, 736, 904, 1018
PleI GAGTC 3 cut(s) 457, 539, 918
PpsI GAGTC 3 cut(s) 457, 539, 918
PpuMI RGGWCCY 1 cut(s) 778
PscI ACATGT 1 cut(s) 278
PsiI TTATAA 1 cut(s) 605
Psp124BI GAGCTC 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 2 cut(s) 128, 337
PspEI GGTNACC 2 cut(s) 1147, 1217
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 2 cut(s) 128, 337
PspN4I GGNNCC 5 cut(s) 127, 525, 688, 779, 780
PspPI GGNCC 2 cut(s) 624, 778
PspPPI RGGWCCY 1 cut(s) 778
PstI CTGCAG 2 cut(s) 649, 1021
PstNI CAGNNNCTG 2 cut(s) 373, 452
PsuI RGATCY 2 cut(s) 697, 1319
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 4 cut(s) 22, 313, 408, 1298
RsaNI GTAC 4 cut(s) 21, 312, 407, 1297
RseI CAYNNNNRTG 4 cut(s) 486, 692, 834, 971
SacI GAGCTC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 936
SatI GCNGC 8 cut(s) 51, 249, 469, 513, 645, 735, 903, 1017
Sau3AI GATC 4 cut(s) 478, 697, 1060, 1319
Sau96I GGNCC 2 cut(s) 624, 778
SchI GAGTC 3 cut(s) 458, 539, 918
ScrFI CCNGG 2 cut(s) 130, 339
SduI GDGCHC 1 cut(s) 197
SfaNI GCATC 2 cut(s) 389, 433
SfcI CTRYAG 4 cut(s) 291, 570, 645, 1017
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 4 cut(s) 486, 692, 834, 971
Sse9I AATT 8 cut(s) 265, 363, 491, 600, 726, 794, 818, 864
SsiI CCGC 3 cut(s) 350, 469, 905
SspMI CTAG 2 cut(s) 1121, 1187
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 128, 337
StyI CCWWGG 3 cut(s) 557, 891, 1267
TaaI ACNGT 6 cut(s) 85, 574, 1044, 1114, 1217, 1315
TaqI TCGA 1 cut(s) 548
TasI AATT 8 cut(s) 265, 363, 491, 600, 726, 794, 818, 864
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TscAI CASTG 8 cut(s) 90, 244, 634, 769, 855, 1117, 1254, 1298
TseFI GTSAC 5 cut(s) 118, 827, 1147, 1165, 1217
TseI GCWGC 7 cut(s) 50, 248, 512, 644, 734, 902, 1016
Tsp45I GTSAC 5 cut(s) 118, 827, 1147, 1165, 1217
TspDTI ATGAA 7 cut(s) 447, 504, 692, 787, 865, 994, 1024
TspGWI ACGGA 1 cut(s) 1316
TspRI CASTG 8 cut(s) 90, 244, 634, 769, 855, 1117, 1254, 1298
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 3 cut(s) 491, 726, 818
XceI RCATGY 2 cut(s) 282, 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XmiI GTMKAC 2 cut(s) 66, 651
XspI CTAG 2 cut(s) 1121, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.