Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Forward (+)

5132462 .. 5133664

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0067700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCCAGAAGAGATGGTGGTGCCAATCCTATCACGGTTGCTTCCGAAATCTCTAATGCGATTCAAGTGCATCCACAAGTCGTGGCATTCTATGATCAATAGTCCCCAGTTCATATCCAAGCATCTCCACTTTCACAACAACCTGTCTTCCTCCACTACCATCCTCTTAAAGCGTCCTGTAATGCGCAGAACTGATACTATGAATGAAGAAATTGTTTGTTCGTTCCTTAATCTTCGCAAGGCAAATGATGGTCATGAGGATAACCTGCATTACGATATCAAGGACCTCGAATTTCCGCCCTCAATGGGTTTGAAAACTAGAAGACAATTTATCGAGATGCCTAATAGATGTTTTTATAATTGTGCATATATTATTGGCCATTGTGATGGGATATTTTGTCTAACTATTTACGCTGCAAGCGAGCTTGTTTTGTACAATCCAGCAATCAAAGAATTCAAGTTTCTTCCGGAGTCATGCCTTCAAGATAAGAATATGGGTTCTGTGGGATTTGGCTATGATCCCAAGTCTGAAGATTACATAATCGTTAGCGTTGTAAGTTATGGTGAGCAATATTACAATGATGATCGTCTGGTTATTGATCCTATGAGAGCAGAAGTTTACACAATGAGTACTGATTGTTGGAAAGAGATCAAGATTCACAATCTGGAAACCGAAACTACGTTTTTTTGGCCTAGACATTTCCAAGTGTACTTCAAGGGTAATTGTTACTGGTTGGCACATGAAAAACGGAAGGAATTTATCACTTTGTATGACAGACTTGAGGAGTACTACATTTGGGAAGCAATTGTTTGTTTTGACACCGCCAATCGGATTTTCCATAATATATTGGTTCCGGATTGCTTGTACGAATTTCCAATGCATGACTTGGACCTTACAGTGTGGAACGATTTCATTGCTCTTTTTGGCTTTTATCGTGGTGGAAGTCGACCCTTTGAGATTTGGGTGATGGATAACTTGGATGGTCTTAACTCTTCGTGGATAAAACAGCTATCCGTTGACATTACGAAATCTCCTATACCATTGGCACTTTGGGAGAGTAATGAGATTCTTTTGGTTTACACACATACACAAATAGCTTTGTACAGCTTTGTAACTGAAAAGTACCAGTACTTACCACTTTATGGTGCGAGTTTTTTTCAGGCTTTTCCTTGTGTGGATAGTATAGTTCCAGTCAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

400

Amino Acids

47.22

Weight (kDa)

5.79

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	109 - 337	1.2e-11	F-box associated beta propeller domain
FBA_1	PF07734	124 - 368	3.4e-27	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc16I	TGCGCA	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	946
AccIII	TCCGGA	2 cut(s)	466, 853
AciI	CCGC	2 cut(s)	296, 822
AclWI	GGATC	2 cut(s)	512, 593
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	4 cut(s)	290, 452, 755, 869
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	8 cut(s)	434, 631, 710, 788, 866, 1103, 1124, 1130
AfiI	CCNNNNNNNGG	3 cut(s)	305, 828, 1142
AgsI	TTSAA	5 cut(s)	64, 313, 457, 482, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
AluBI	AGCT	4 cut(s)	424, 1009, 1097, 1107
AluI	AGCT	4 cut(s)	424, 1009, 1097, 1107
AlwI	GGATC	2 cut(s)	512, 593
Aor13HI	TCCGGA	2 cut(s)	466, 853
AoxI	GGCC	2 cut(s)	376, 689
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	4 cut(s)	290, 452, 755, 869
Asp700I	GAANNNNTTC	1 cut(s)	908
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	283, 889
AsuHPI	GGTGA	2 cut(s)	575, 976
AvaII	GGWCC	2 cut(s)	283, 889
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	138, 328
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	6 cut(s)	7, 167, 242, 380, 961, 974
BcgI	CGANNNNNNTGC	4 cut(s)	48, 82, 896, 930
BclI	TGATCA	1 cut(s)	93
BfaI	CTAG	2 cut(s)	318, 693
BfuAI	ACCTGC	1 cut(s)	273
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmcAI	AGTACT	3 cut(s)	631, 788, 1130
Bme18I	GGWCC	2 cut(s)	283, 889
BmgT120I	GGNCC	2 cut(s)	283, 889
BmiI	GGNNCC	2 cut(s)	21, 852
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	3 cut(s)	78, 130, 327
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	2 cut(s)	138, 328
BpuEI	CTTGAG	1 cut(s)	800
BsaWI	WCCGGW	2 cut(s)	466, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	1015, 1045
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 828, 1142
Bse1I	ACTGG	4 cut(s)	106, 734, 1126, 1190
Bse3DI	GCAATG	1 cut(s)	912
BseAI	TCCGGA	2 cut(s)	466, 853
BseGI	GGATG	3 cut(s)	69, 159, 985
BseLI	CCNNNNNNNGG	3 cut(s)	305, 828, 1142
BseMI	GCAATG	1 cut(s)	912
BseNI	ACTGG	4 cut(s)	106, 734, 1126, 1190
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	1 cut(s)	400
BshFI	GGCC	2 cut(s)	378, 691
BshNI	GGYRCC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	467, 854
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	3 cut(s)	305, 828, 1142
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	378, 691
Bsp13I	TCCGGA	2 cut(s)	466, 853
Bsp1407I	TGTACA	2 cut(s)	432, 1101
Bsp143I	GATC	5 cut(s)	93, 517, 583, 598, 648
BspACI	CCGC	2 cut(s)	296, 822
BspANI	GGCC	2 cut(s)	378, 691
BspEI	TCCGGA	2 cut(s)	466, 853
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	21, 852
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	512, 593
BspT107I	GGYRCC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	2 cut(s)	432, 1101
BsrI	ACTGG	4 cut(s)	106, 734, 1126, 1190
BssMI	GATC	5 cut(s)	93, 517, 583, 598, 648
Bst4CI	ACNGT	2 cut(s)	36, 898
Bst6I	CTCTTC	2 cut(s)	3, 997
BstAUI	TGTACA	2 cut(s)	432, 1101
BstC8I	GCNNGC	2 cut(s)	418, 422
BstF5I	GGATG	3 cut(s)	69, 159, 985
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	5 cut(s)	96, 520, 586, 601, 651
BstMBI	GATC	5 cut(s)	93, 517, 583, 598, 648
BstV1I	GCAGC	1 cut(s)	400
BstV2I	GAAGAC	2 cut(s)	138, 328
BstXI	CCANNNNNNTGG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	378, 691
BtsCI	GGATG	3 cut(s)	69, 159, 985
BtsIMutI	CAGTG	1 cut(s)	903
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	418, 422
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	283, 889
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	8 cut(s)	433, 630, 709, 787, 865, 1102, 1123, 1129
CviAII	CATG	4 cut(s)	254, 474, 740, 881
CviJI	RGCY	9 cut(s)	378, 424, 513, 691, 927, 1009, 1097, 1107, 1163
CviKI_1	RGCY	9 cut(s)	378, 424, 513, 691, 927, 1009, 1097, 1107, 1163
CviQI	GTAC	8 cut(s)	433, 630, 709, 787, 865, 1102, 1123, 1129
DpnI	GATC	5 cut(s)	95, 519, 585, 600, 650
DpnII	GATC	5 cut(s)	93, 517, 583, 598, 648
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	3, 997
EarI	CTCTTC	2 cut(s)	3, 997
EciI	GGCGGA	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	283, 889
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	882
FaeI	CATG	4 cut(s)	257, 477, 743, 884
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	253, 473, 739, 880
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	946
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	3 cut(s)	56, 146, 992
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	318, 693
FspI	TGCGCA	1 cut(s)	185
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	378, 691
HapII	CCGG	2 cut(s)	467, 854
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	257, 477, 743, 884
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	2 cut(s)	947, 1018
HindII	GTYRAC	2 cut(s)	947, 1018
HinfI	GANTC	4 cut(s)	60, 470, 655, 1066
HpaII	CCGG	2 cut(s)	467, 854
HphI	GGTGA	2 cut(s)	575, 976
Hpy166II	GTNNAC	5 cut(s)	619, 709, 947, 1018, 1078
Hpy188I	TCNGA	3 cut(s)	45, 529, 831
Hpy188III	TCNNGA	7 cut(s)	254, 334, 467, 482, 652, 665, 854
Hpy8I	GTNNAC	5 cut(s)	619, 709, 947, 1018, 1078
HpyAV	CCTTC	2 cut(s)	488, 745
HpyCH4III	ACNGT	2 cut(s)	36, 898
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	5 cut(s)	69, 268, 365, 416, 880
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	4 cut(s)	257, 477, 743, 884
HspAI	GCGC	1 cut(s)	184
Kpn2I	TCCGGA	2 cut(s)	466, 853
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	93, 517, 583, 598, 648
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	3 cut(s)	78, 130, 327
MaeI	CTAG	2 cut(s)	318, 693
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	725, 1111
MalI	GATC	5 cut(s)	95, 519, 585, 600, 650
MboI	GATC	5 cut(s)	93, 517, 583, 598, 648
MboII	GAAGA	8 cut(s)	20, 138, 218, 224, 333, 455, 542, 984
MfeI	CAATTG	1 cut(s)	804
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	9 cut(s)	210, 290, 326, 358, 452, 721, 755, 804, 869
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	6 cut(s)	160, 173, 250, 296, 310, 775
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	882
MroI	TCCGGA	2 cut(s)	466, 853
MroXI	GAANNNNTTC	1 cut(s)	908
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	3 cut(s)	167, 228, 987
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	2 cut(s)	467, 854
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	85
NdeII	GATC	5 cut(s)	93, 517, 583, 598, 648
NlaIII	CATG	4 cut(s)	257, 477, 743, 884
NlaIV	GGNNCC	2 cut(s)	21, 852
NsbI	TGCGCA	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	882
PagI	TCATGA	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	60, 655, 1066
PflMI	CCANNNNNTGG	1 cut(s)	1142
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PpuMI	RGGWCCY	1 cut(s)	283
PsiI	TTATAA	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	21, 852
PspPI	GGNCC	2 cut(s)	283, 889
PspPPI	RGGWCCY	1 cut(s)	283
RsaI	GTAC	8 cut(s)	434, 631, 710, 788, 866, 1103, 1124, 1130
RsaNI	GTAC	8 cut(s)	433, 630, 709, 787, 865, 1102, 1123, 1129
RseI	CAYNNNNRTG	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	945
SaqAI	TTAA	3 cut(s)	167, 228, 987
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	5 cut(s)	93, 517, 583, 598, 648
Sau96I	GGNCC	2 cut(s)	283, 889
ScaI	AGTACT	3 cut(s)	631, 788, 1130
SchI	GAGTC	1 cut(s)	479
SfaNI	GCATC	3 cut(s)	78, 130, 327
SinI	GGWCC	2 cut(s)	283, 889
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	9 cut(s)	210, 290, 326, 358, 452, 721, 755, 804, 869
SsiI	CCGC	2 cut(s)	296, 822
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	2 cut(s)	318, 693
TaaI	ACNGT	2 cut(s)	36, 898
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	3 cut(s)	288, 333, 946
TasI	AATT	9 cut(s)	210, 290, 326, 358, 452, 721, 755, 804, 869
TatI	WGTACW	6 cut(s)	432, 629, 708, 786, 1101, 1128
TfiI	GAWTC	3 cut(s)	60, 655, 1066
Tru1I	TTAA	3 cut(s)	167, 228, 987
Tru9I	TTAA	3 cut(s)	167, 228, 987
TscAI	CASTG	1 cut(s)	903
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	5 cut(s)	100, 215, 219, 756, 901
TspGWI	ACGGA	2 cut(s)	763, 1003
TspRI	CASTG	1 cut(s)	903
Van91I	CCANNNNNTGG	1 cut(s)	1142
VpaK11BI	GGWCC	2 cut(s)	283, 889
XapI	RAATTY	4 cut(s)	290, 452, 755, 869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1047
XmiI	GTMKAC	1 cut(s)	946
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	2 cut(s)	318, 693
ZrmI	AGTACT	3 cut(s)	631, 788, 1130
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.