Rh3DG130100

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000603
Physical Location & Seq
Forward (+)
11111342 .. 11112121
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG130100.1

Sequence Viewer

Length: 780 bp
ATGGAATGGAGACTCTGCACAGTGACCCAAGTTGAGGAGCTCAAGTCCCTCATAAGACTACTACCGATATGGGCCACTGGCATTATATTCTCAGCGGTATACAGCCAAATGGGAACCTTGTTTGTGCTCCAAGGAAACACAATGGACCTTCACCTAGGCAACTCCTCCTTTGAAATCCCCTCCGCCTCGCTCTCCCTCTTTGACACCATCAGCGTCATCTTCTGGGTTCCAGTCTACGACGGTGTCATTGTCCCATTTGTTAGGAAATTCACAGGCCACAAAAACGGGTTCACCCAACTTCAAAGAATAGGAATTGGGTTTGTGATCTCAGTCTTTGCAATGTTGGCTGCTGGGACTTTGGAGCTTGTGAGACTCAATGTGGTGAAAAAGCACAATTACTATGACATGAAGCCCATCCCCATGTCAGTCTTTTGGCAAGTGCCACAGTACTTCATTATTGGGTGTGCTGTGGTTTTCACATTTATTGGGCAACTGGAGTTCTTCTACGAGCAAGCTCCTGATGCCATGAAGAGCTTGTGTTCTGCTCTCGCGCTGATAACGAATGCGTTAGGGAACTATTTGAGCACATTTCTTGTGAACATTGTGACTAACGTGAGCACAAGAAATGGCAAAGCTGGTTGGATACCAGATAACTTGAAGTATGGGCGCCTTGACTACTTCTTCTGGCTTTTAGGTGTGTTGAGTGTGTTGAATTTGGGGTTCTATCTTATGGTTGCTAGATGGTATACTTACAAGAGGGCAGTGGTTCCTAGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

259

Amino Acids

29.33

Weight (kDa)

9.08

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 3 - 215 2.7e-59 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 666
AccI GTMKAC 3 cut(s) 99, 234, 746
AccII CGCG 1 cut(s) 551
AciI CCGC 2 cut(s) 95, 183
AcsI RAATTY 2 cut(s) 266, 712
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 4 cut(s) 173, 302, 658, 712
AluBI AGCT 5 cut(s) 40, 364, 515, 534, 635
AluI AGCT 5 cut(s) 40, 364, 515, 534, 635
Alw21I GWGCWC 4 cut(s) 42, 129, 587, 620
Alw26I GTCTC 2 cut(s) 4, 364
AoxI GGCC 2 cut(s) 72, 274
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 2 cut(s) 266, 712
AspA2I CCTAGG 1 cut(s) 154
AspLEI GCGC 2 cut(s) 553, 669
AspS9I GGNCC 2 cut(s) 72, 145
AsuHPI GGTGA 3 cut(s) 143, 283, 394
AvaII GGWCC 1 cut(s) 145
AvrII CCTAGG 1 cut(s) 154
BanI GGYRCC 1 cut(s) 666
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 4 cut(s) 42, 129, 587, 620
BbvI GCAGC 1 cut(s) 334
BccI CCATC 3 cut(s) 215, 422, 735
BciVI GTATCC 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 4, 364
BfaI CTAG 3 cut(s) 155, 738, 771
BfoI RGCGCY 1 cut(s) 670
BfuI GTATCC 1 cut(s) 636
BisI GCNGC 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 154
BlsI GCNGC 1 cut(s) 349
BmcAI AGTACT 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 72, 145
BmiI GGNNCC 4 cut(s) 115, 228, 668, 768
BmsI GCATC 1 cut(s) 511
BpmI CTGGAG 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 667
BsaJI CCNNGG 2 cut(s) 130, 154
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 82, 230, 498
Bse3DI GCAATG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 130, 154
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 105, 342
BseNI ACTGG 3 cut(s) 82, 230, 498
BseRI GAGGAG 2 cut(s) 50, 154
BseXI GCAGC 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 2 cut(s) 74, 276
BshNI GGYRCC 1 cut(s) 666
BsiHKAI GWGCWC 4 cut(s) 42, 129, 587, 620
BslFI GGGAC 3 cut(s) 31, 236, 367
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 4, 364
BsmFI GGGAC 3 cut(s) 31, 236, 367
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 2 cut(s) 74, 276
Bsp1286I GDGCHC 4 cut(s) 42, 129, 587, 620
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 2 cut(s) 95, 183
BspANI GGCC 2 cut(s) 74, 276
BspCNI CTCAG 2 cut(s) 104, 341
BspFNI CGCG 1 cut(s) 551
BspLI GGNNCC 4 cut(s) 115, 228, 668, 768
BspQI GCTCTTC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 666
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 3 cut(s) 82, 230, 498
BssECI CCNNGG 2 cut(s) 130, 154
BssMI GATC 1 cut(s) 324
BssNAI GTATAC 2 cut(s) 100, 747
BssNI GRCGYC 1 cut(s) 667
BssT1I CCWWGG 2 cut(s) 130, 154
Bst1107I GTATAC 2 cut(s) 100, 747
Bst4CI ACNGT 3 cut(s) 22, 242, 447
Bst6I CTCTTC 1 cut(s) 524
BstACI GRCGYC 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 2 cut(s) 91, 328
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 551
BstH2I RGCGCY 1 cut(s) 670
BstHHI GCGC 2 cut(s) 553, 669
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 4, 364
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 344, 521
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 334
BstZ17I GTATAC 2 cut(s) 100, 747
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 2 cut(s) 74, 276
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 3 cut(s) 27, 75, 768
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 2 cut(s) 553, 669
Cfr13I GGNCC 2 cut(s) 72, 145
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 448
CviAII CATG 3 cut(s) 406, 421, 526
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 2 cut(s) 91, 328
DinI GGCGCC 1 cut(s) 668
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 130, 154
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 130, 154
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 668
EheI GGCGCC 1 cut(s) 668
ErhI CCWWGG 2 cut(s) 130, 154
FaeI CATG 3 cut(s) 409, 424, 529
FaqI GGGAC 3 cut(s) 31, 236, 367
FatI CATG 3 cut(s) 405, 420, 525
FblI GTMKAC 3 cut(s) 99, 234, 746
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 3 cut(s) 155, 738, 771
GlaI GCGC 2 cut(s) 552, 668
GluI GCNGC 1 cut(s) 348
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 515
HaeII RGCGCY 1 cut(s) 670
HaeIII GGCC 2 cut(s) 74, 276
HgaI GACGC 1 cut(s) 202
HhaI GCGC 2 cut(s) 553, 669
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 3 cut(s) 409, 424, 529
Hin6I GCGC 2 cut(s) 551, 667
HinP1I GCGC 2 cut(s) 551, 667
HinfI GANTC 2 cut(s) 12, 372
HphI GGTGA 3 cut(s) 143, 283, 394
Hpy166II GTNNAC 5 cut(s) 100, 235, 291, 598, 747
Hpy188III TCNNGA 1 cut(s) 518
Hpy8I GTNNAC 5 cut(s) 100, 235, 291, 598, 747
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 22, 242, 447
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 2 cut(s) 18, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 521
HpyF3I CTNAG 2 cut(s) 91, 328
HpySE526I ACGT 1 cut(s) 612
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 3 cut(s) 409, 424, 529
HspAI GCGC 2 cut(s) 551, 667
KasI GGCGCC 1 cut(s) 666
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 4 cut(s) 37, 132, 361, 520
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 511
MaeI CTAG 3 cut(s) 155, 738, 771
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 22, 604
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 4 cut(s) 211, 493, 541, 673
MhlI GDGCHC 4 cut(s) 42, 129, 587, 620
MluCI AATT 4 cut(s) 266, 312, 394, 712
Mly113I GGCGCC 1 cut(s) 667
MlyI GAGTC 2 cut(s) 6, 366
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 7 cut(s) 28, 59, 175, 190, 196, 206, 750
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 568
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 2 cut(s) 344, 521
NarI GGCGCC 1 cut(s) 667
NdeII GATC 1 cut(s) 324
NlaIII CATG 3 cut(s) 409, 424, 529
NlaIV GGNNCC 4 cut(s) 115, 228, 668, 768
NmuCI GTSAC 2 cut(s) 22, 604
PciSI GCTCTTC 1 cut(s) 524
PctI GAATGC 1 cut(s) 568
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 2 cut(s) 6, 366
PluTI GGCGCC 1 cut(s) 670
PpsI GAGTC 2 cut(s) 6, 366
Psp124BI GAGCTC 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 350
PspN4I GGNNCC 4 cut(s) 115, 228, 668, 768
PspPI GGNCC 2 cut(s) 72, 145
PsyI GACNNNGTC 1 cut(s) 242
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 524
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 2 cut(s) 72, 145
ScaI AGTACT 1 cut(s) 449
SchI GAGTC 2 cut(s) 6, 366
SduI GDGCHC 4 cut(s) 42, 129, 587, 620
SfaNI GCATC 1 cut(s) 511
SfoI GGCGCC 1 cut(s) 668
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 266, 312, 394, 712
SsiI CCGC 2 cut(s) 95, 183
SspDI GGCGCC 1 cut(s) 666
SspMI CTAG 3 cut(s) 155, 738, 771
SstI GAGCTC 1 cut(s) 42
StyI CCWWGG 2 cut(s) 130, 154
TaaI ACNGT 3 cut(s) 22, 242, 447
TaiI ACGT 1 cut(s) 615
TasI AATT 4 cut(s) 266, 312, 394, 712
TatI WGTACW 1 cut(s) 447
TscAI CASTG 3 cut(s) 27, 82, 768
TseFI GTSAC 2 cut(s) 22, 604
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 22, 604
TspDTI ATGAA 3 cut(s) 422, 442, 542
TspRI CASTG 3 cut(s) 27, 82, 768
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 2 cut(s) 266, 712
XmaJI CCTAGG 1 cut(s) 154
XmiI GTMKAC 3 cut(s) 99, 234, 746
XspI CTAG 3 cut(s) 155, 738, 771
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.