Rh1DG164100

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
33762663 .. 33765781
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG164100.1

Sequence Viewer

Length: 1386 bp
ATGGCTCTCTTGACAATGTCCACATCAGTCCCAGGCCTGAAACCTACCTGTGTTTCGAAAGATGACTGCTATGCAACTGCTGGACAATCTGCAGCCTGCTTTGTGGCATTGTACCTTATAGCTTTGGCAACTGGTGGGATTAAGCCTTGTGTCTCAGCTTATGGAGCAGATCAGTTTGACGAGGATGATGAGATTGAAAAGAAGCACAAGAGTTCTTTCTTCAACTGGTTCTATTTTGTCATCAACATCGGTGCTTTGATTGCAAGTTCATTGCTGGTATGGATACAAACCAACATTGGTTGGGAATGGGGTTTCGGCATACCAGCAGTTGCCATGGCAATTGCTGTAGTGAGTTTCTTTTCGGGTACTAGGATATACAGGAACCAGAACCCAGGAGGTAGCCCGATAACCCGAATAGTTCAGGTGGTGGTGGCATCTGTGAGAAAATACAAGGTGAAAGTACCTGAAGACAAGTCCCTTTTCTATGAGACCGCAGATGCAGAGTCTGCTATCAAAGGAAGCCGCAAGCTTGAACACACGAATGAGTTTAGGTTTTTTGACAAAGCAGTTGTGGAGCTACCAACAGACAACATAAAGGGCTTCATAGACCCGTGGAGACTTTGTACAGTTACCCAAGTAGAGGAGCTAAAATCAATCATAAGGTTGCTTCCTGTTTGGGCCACTGGTATTATCTTTGCTGCGGTCTTCAGTCAGATGAGCAACTTCTTTGTGTTGCAAGGCAGCCTTATGGATCTTCATGTTGGCTCCTCTAGCTTTGAGATTCCAGCAGCCTCCCTGTCTGTATTCGATACCCTTAGTGTTATTGTTTGGATCCCAATCTATGATCGACTCATTGTCCCATTTACTAGAAAATTCACAGGTCACAAGAATGGCATAACTTCACTCCAGAGGATGGGAATTGGTCTCTTCATTTCCATATTCTCCATGATATGTGCTGCAATTCTAGAATATATCAGACTCCAAAAGGTTCGAGAGCACAACTATTATGACCTTGACTATATGCCCATGTCTGTTTTTTGGCAAGTGCCTCAGTATTTCCTAATAGGTGCTGCAGAAGTCTTCACAGTCATTGGACAGGTTGACTTTTTCTACGATCAAGCACCTGATGCCATGAGAAGCTTGTCTTCTGCTCTCGCACTCTCCACTGTTGCATTAGGAAACTACTTCAACTCTCTGCTTGTCACCATTGTTTCCAACGTGACGACAAAGAACAATAAGCCGGGATGGATACCGGACAATTTGAACTACGGTCACCTCGATTATTTCTTCTATTTTCTCGCAGTGCTGAGTGTTCTGAACCTTGGAGCTTTTATGTTAATTTCCAAGTGGTACACATATAAAAAGACTCTGGGAACTCTCCGTTGA

Protein Analysis

461

Amino Acids

51.58

Weight (kDa)

7.57

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 1 - 417 9.5e-115 POT family
MFS_1 PF07690 32 - 393 2.4e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 913
AciI CCGC 3 cut(s) 492, 523, 701
AclWI GGATC 3 cut(s) 759, 826, 839
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 2 cut(s) 486, 691
AfaI GTAC 5 cut(s) 113, 367, 462, 625, 1352
AfiI CCNNNNNNNGG 2 cut(s) 640, 913
AgsI TTSAA 5 cut(s) 197, 223, 533, 1189, 1264
AhdI GACNNNNNGTC 1 cut(s) 854
AjnI CCWGG 2 cut(s) 31, 391
AluBI AGCT 8 cut(s) 122, 158, 529, 577, 646, 774, 1140, 1328
AluI AGCT 8 cut(s) 122, 158, 529, 577, 646, 774, 1140, 1328
Alw21I GWGCWC 1 cut(s) 999
Alw26I GTCTC 4 cut(s) 157, 482, 610, 929
AlwI GGATC 3 cut(s) 759, 826, 839
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 2 cut(s) 34, 678
ApeKI GCWGC 6 cut(s) 92, 698, 741, 788, 956, 1070
ApoI RAATTY 1 cut(s) 872
AspS9I GGNCC 1 cut(s) 678
AsuC2I CCSGG 1 cut(s) 1242
AsuHPI GGTGA 3 cut(s) 466, 1195, 1265
AsuII TTCGAA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 831
BbsI GAAGAC 4 cut(s) 474, 697, 1072, 1137
Bbv12I GWGCWC 1 cut(s) 999
BbvI GCAGC 6 cut(s) 104, 685, 753, 800, 943, 1057
BccI CCATC 2 cut(s) 907, 1239
BciT130I CCWGG 2 cut(s) 33, 393
BciVI GTATCC 2 cut(s) 276, 1242
BcnI CCSGG 1 cut(s) 1242
BcoDI GTCTC 4 cut(s) 157, 482, 610, 929
BfaI CTAG 4 cut(s) 369, 771, 867, 965
BfmI CTRYAG 3 cut(s) 90, 345, 1071
BfuI GTATCC 2 cut(s) 276, 1242
BisI GCNGC 7 cut(s) 93, 523, 699, 742, 789, 957, 1071
BlsI GCNGC 7 cut(s) 94, 524, 700, 743, 790, 958, 1072
Bme1390I CCNGG 3 cut(s) 33, 393, 1242
BmeRI GACNNNNNGTC 1 cut(s) 854
BmgT120I GGNCC 1 cut(s) 678
BmiI GGNNCC 3 cut(s) 383, 766, 833
BmrFI CCNGG 3 cut(s) 33, 393, 1242
BmsI GCATC 3 cut(s) 443, 487, 1117
BpiI GAAGAC 4 cut(s) 474, 697, 1072, 1137
BpmI CTGGAG 1 cut(s) 890
Bpu14I TTCGAA 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 1242
BsaBI GATNNNNATC 1 cut(s) 836
BsaI GGTCTC 2 cut(s) 482, 929
BsaJI CCNNGG 5 cut(s) 31, 333, 391, 611, 1321
BsaWI WCCGGW 1 cut(s) 1252
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 913
Bse1I ACTGG 3 cut(s) 136, 230, 688
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 836
BseBI CCWGG 2 cut(s) 33, 393
BseDI CCNNGG 5 cut(s) 31, 333, 391, 611, 1321
BseGI GGATG 3 cut(s) 190, 918, 1250
BseJI GATNNNNATC 1 cut(s) 836
BseLI CCNNNNNNNGG 2 cut(s) 640, 913
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 168, 1064, 1298
BseNI ACTGG 3 cut(s) 136, 230, 688
BseRI GAGGAG 2 cut(s) 656, 757
BseXI GCAGC 6 cut(s) 104, 685, 753, 800, 943, 1057
BshFI GGCC 2 cut(s) 36, 680
BsiHKAI GWGCWC 1 cut(s) 999
BsiSI CCGG 2 cut(s) 1241, 1253
BslFI GGGAC 3 cut(s) 14, 460, 842
BslI CCNNNNNNNGG 2 cut(s) 640, 913
BsmAI GTCTC 4 cut(s) 157, 482, 610, 929
BsmFI GGGAC 3 cut(s) 14, 460, 842
BsnI GGCC 2 cut(s) 36, 680
Bso31I GGTCTC 2 cut(s) 482, 929
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 999
Bsp1407I TGTACA 1 cut(s) 623
Bsp143I GATC 5 cut(s) 169, 751, 831, 844, 1114
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 492, 523, 701
BspANI GGCC 2 cut(s) 36, 680
BspCNI CTCAG 3 cut(s) 167, 1063, 1299
BspLI GGNNCC 3 cut(s) 383, 766, 833
BspMAI CTGCAG 2 cut(s) 94, 1075
BspPI GGATC 3 cut(s) 759, 826, 839
BspT104I TTCGAA 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 482, 929
BsrDI GCAATG 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 623
BsrI ACTGG 3 cut(s) 136, 230, 688
BssECI CCNNGG 5 cut(s) 31, 333, 391, 611, 1321
BssMI GATC 5 cut(s) 169, 751, 831, 844, 1114
BssT1I CCWWGG 2 cut(s) 333, 1321
Bst2UI CCWGG 2 cut(s) 33, 393
Bst4CI ACNGT 4 cut(s) 628, 1087, 1168, 1271
Bst6I CTCTTC 1 cut(s) 932
BstAPI GCANNNNNTGC 2 cut(s) 506, 1127
BstAUI TGTACA 1 cut(s) 623
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 97, 527
BstDEI CTNAG 4 cut(s) 154, 815, 1050, 1307
BstDSI CCRYGG 2 cut(s) 333, 611
BstEII GGTNACC 1 cut(s) 1271
BstF5I GGATG 3 cut(s) 190, 918, 1250
BstKTI GATC 5 cut(s) 172, 754, 834, 847, 1117
BstMAI GTCTC 4 cut(s) 157, 482, 610, 929
BstMBI GATC 5 cut(s) 169, 751, 831, 844, 1114
BstMWI GCNNNNNNNGC 5 cut(s) 164, 260, 506, 771, 1127
BstNI CCWGG 2 cut(s) 33, 393
BstPI GGTNACC 1 cut(s) 1271
BstSCI CCNGG 3 cut(s) 31, 391, 1240
BstSFI CTRYAG 3 cut(s) 90, 345, 1071
BstV1I GCAGC 6 cut(s) 104, 685, 753, 800, 943, 1057
BstV2I GAAGAC 4 cut(s) 474, 697, 1072, 1137
BstX2I RGATCY 2 cut(s) 751, 831
BstYI RGATCY 2 cut(s) 751, 831
BsuI GTATCC 2 cut(s) 276, 1242
BsuRI GGCC 2 cut(s) 36, 680
BtgI CCRYGG 2 cut(s) 333, 611
BtsCI GGATG 3 cut(s) 190, 918, 1250
BtsI GCAGTG 1 cut(s) 1308
BtsIMutI CAGTG 3 cut(s) 681, 1164, 1308
Cac8I GCNNGC 2 cut(s) 97, 527
CaiI CAGNNNCTG 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 678
Csp6I GTAC 5 cut(s) 112, 366, 461, 624, 1351
CviAII CATG 5 cut(s) 334, 758, 946, 1027, 1132
CviQI GTAC 5 cut(s) 112, 366, 461, 624, 1351
DdeI CTNAG 4 cut(s) 154, 815, 1050, 1307
DpnI GATC 5 cut(s) 171, 753, 833, 846, 1116
DpnII GATC 5 cut(s) 169, 751, 831, 844, 1114
DriI GACNNNNNGTC 1 cut(s) 854
Eam1104I CTCTTC 1 cut(s) 932
Eam1105I GACNNNNNGTC 1 cut(s) 854
EarI CTCTTC 1 cut(s) 932
Eco130I CCWWGG 2 cut(s) 333, 1321
Eco147I AGGCCT 1 cut(s) 36
Eco31I GGTCTC 2 cut(s) 482, 929
Eco57I CTGAAG 2 cut(s) 486, 691
Eco91I GGTNACC 1 cut(s) 1271
EcoO65I GGTNACC 1 cut(s) 1271
EcoRII CCWGG 2 cut(s) 31, 391
EcoT14I CCWWGG 2 cut(s) 333, 1321
ErhI CCWWGG 2 cut(s) 333, 1321
FaeI CATG 5 cut(s) 337, 761, 949, 1030, 1135
FalI AAGNNNNNCTT 4 cut(s) 729, 761, 1129, 1161
FaqI GGGAC 3 cut(s) 14, 460, 842
FatI CATG 5 cut(s) 333, 757, 945, 1026, 1131
Fnu4HI GCNGC 7 cut(s) 93, 523, 699, 742, 789, 957, 1071
FokI GGATG 3 cut(s) 197, 925, 1257
Fsp4HI GCNGC 7 cut(s) 93, 523, 699, 742, 789, 957, 1071
FspBI CTAG 4 cut(s) 369, 771, 867, 965
GluI GCNGC 7 cut(s) 93, 523, 699, 742, 789, 957, 1071
GsuI CTGGAG 1 cut(s) 890
HaeIII GGCC 2 cut(s) 36, 680
HapII CCGG 2 cut(s) 1241, 1253
Hin1II CATG 5 cut(s) 337, 761, 949, 1030, 1135
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 2 cut(s) 527, 1138
HinfI GANTC 5 cut(s) 503, 781, 849, 978, 1366
HpaII CCGG 2 cut(s) 1241, 1253
HphI GGTGA 3 cut(s) 466, 1195, 1265
Hpy166II GTNNAC 3 cut(s) 21, 1102, 1353
Hpy188I TCNGA 3 cut(s) 714, 977, 1317
Hpy188III TCNNGA 4 cut(s) 10, 907, 965, 992
Hpy8I GTNNAC 3 cut(s) 21, 1102, 1353
HpyCH4III ACNGT 4 cut(s) 628, 1087, 1168, 1271
HpyCH4IV ACGT 1 cut(s) 1218
HpyCH4V TGCA 8 cut(s) 74, 92, 263, 500, 736, 959, 1073, 1172
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 260, 506, 771, 1127
HpyF3I CTNAG 4 cut(s) 154, 815, 1050, 1307
HpySE526I ACGT 1 cut(s) 1218
Hsp92II CATG 5 cut(s) 337, 761, 949, 1030, 1135
Kzo9I GATC 5 cut(s) 169, 751, 831, 844, 1114
LmnI GCTCC 5 cut(s) 164, 574, 643, 770, 1325
Lsp1109I GCAGC 6 cut(s) 104, 685, 753, 800, 943, 1057
LweI GCATC 3 cut(s) 443, 487, 1117
MaeI CTAG 4 cut(s) 369, 771, 867, 965
MaeII ACGT 1 cut(s) 1218
MaeIII GTNAC 5 cut(s) 628, 881, 1201, 1219, 1271
MalI GATC 5 cut(s) 171, 753, 833, 846, 1116
MboI GATC 5 cut(s) 169, 751, 831, 844, 1114
MboII GAAGA 8 cut(s) 211, 479, 697, 746, 919, 1072, 1137, 1279
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 751, 831
MhlI GDGCHC 1 cut(s) 999
MluCI AATT 6 cut(s) 339, 872, 918, 960, 1258, 1338
MlyI GAGTC 4 cut(s) 512, 843, 972, 1360
MmeI TCCRAC 1 cut(s) 1239
MnlI CCTC 8 cut(s) 175, 389, 634, 778, 802, 903, 1059, 1286
MseI TTAA 2 cut(s) 141, 1337
MslI CAYNNNNRTG 2 cut(s) 540, 888
MspI CCGG 2 cut(s) 1241, 1253
MspR9I CCNGG 3 cut(s) 33, 393, 1242
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 2 cut(s) 33, 393
MwoI GCNNNNNNNGC 5 cut(s) 164, 260, 506, 771, 1127
NciI CCSGG 1 cut(s) 1242
NcoI CCATGG 1 cut(s) 333
NdeII GATC 5 cut(s) 169, 751, 831, 844, 1114
NlaIII CATG 5 cut(s) 337, 761, 949, 1030, 1135
NlaIV GGNNCC 3 cut(s) 383, 766, 833
NmuCI GTSAC 4 cut(s) 881, 1201, 1219, 1271
NspV TTCGAA 1 cut(s) 56
PceI AGGCCT 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 1275
PfeI GAWTC 1 cut(s) 781
PflFI GACNNNGTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 913
PkrI GCNGC 7 cut(s) 94, 524, 700, 743, 790, 958, 1072
PleI GAGTC 4 cut(s) 511, 843, 972, 1360
PpsI GAGTC 4 cut(s) 511, 843, 972, 1360
Psp6I CCWGG 2 cut(s) 31, 391
PspEI GGTNACC 1 cut(s) 1271
PspGI CCWGG 2 cut(s) 31, 391
PspN4I GGNNCC 3 cut(s) 383, 766, 833
PspPI GGNCC 1 cut(s) 678
PstI CTGCAG 2 cut(s) 94, 1075
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 751, 831
PsyI GACNNNGTC 1 cut(s) 16
RsaI GTAC 5 cut(s) 113, 367, 462, 625, 1352
RsaNI GTAC 5 cut(s) 112, 366, 461, 624, 1351
RseI CAYNNNNRTG 2 cut(s) 540, 888
SaqAI TTAA 2 cut(s) 141, 1337
SatI GCNGC 7 cut(s) 93, 523, 699, 742, 789, 957, 1071
Sau3AI GATC 5 cut(s) 169, 751, 831, 844, 1114
Sau96I GGNCC 1 cut(s) 678
SchI GAGTC 4 cut(s) 512, 843, 972, 1360
ScrFI CCNGG 3 cut(s) 33, 393, 1242
SduI GDGCHC 1 cut(s) 999
SfaNI GCATC 3 cut(s) 443, 487, 1117
SfcI CTRYAG 3 cut(s) 90, 345, 1071
SfuI TTCGAA 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 540, 888
Sse9I AATT 6 cut(s) 339, 872, 918, 960, 1258, 1338
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 3 cut(s) 492, 523, 701
SspMI CTAG 4 cut(s) 369, 771, 867, 965
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 31, 391, 1240
StyI CCWWGG 2 cut(s) 333, 1321
TaaI ACNGT 4 cut(s) 628, 1087, 1168, 1271
TaiI ACGT 1 cut(s) 1221
TaqI TCGA 5 cut(s) 56, 807, 847, 991, 1278
TasI AATT 6 cut(s) 339, 872, 918, 960, 1258, 1338
TatI WGTACW 1 cut(s) 623
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 2 cut(s) 141, 1337
Tru9I TTAA 2 cut(s) 141, 1337
TscAI CASTG 3 cut(s) 688, 1171, 1308
TseFI GTSAC 4 cut(s) 881, 1201, 1219, 1271
TseI GCWGC 6 cut(s) 92, 698, 741, 788, 956, 1070
Tsp45I GTSAC 4 cut(s) 881, 1201, 1219, 1271
TspDTI ATGAA 4 cut(s) 258, 592, 746, 919
TspGWI ACGGA 1 cut(s) 1370
TspRI CASTG 3 cut(s) 688, 1171, 1308
Tth111I GACNNNGTC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 913
XapI RAATTY 1 cut(s) 872
XbaI TCTAGA 1 cut(s) 964
XspI CTAG 4 cut(s) 369, 771, 867, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.