Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017585.1

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Forward (+)

23822 .. 24472

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017585.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcagaagattatgtatacttacaaggtgggagagttggaggacccattgcagaagatgatttatacaccaaagatgggacagtggattacagagggaacccggctaccaaaaatgtcacaggaacctggaaggcatgcccttttcacaagaatggcataacttcactccagaggatgggaattggtctcttcatttccatattctccatgatatgtgctgcaattctagaatatatcaggctccaaaaggttcgagagcacaactattatgaccttgaccatatgcccatgtctgttttttggcaagtgcctcagtatttcctaataggggctgcagaagtcttcacagtcattggacaggtcgactttttctacgatcaagcacctgatgccatgagaagcttgtcttctgctctcgcactctccactgttgcattaggaaactacttcaactctctgcttgtcaccattgtttccaacgtgacgacaaagaacaataagccgggatggataccagacaatttgaactacggtcacctcgattatttcttctattttctcgctgtgctgagtgttctgaacctcggagcttttatgttaatttccaagtggtacacatataaaaagactctgggaactttgcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

216

Amino Acids

24.4

Weight (kDa)

6.89

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	2 cut(s)	18, 366
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	78, 178, 331
AgsI	TTSAA	2 cut(s)	454, 529
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	405, 593
AluI	AGCT	2 cut(s)	405, 593
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	221, 335
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	104, 507
AsuHPI	GGTGA	2 cut(s)	460, 530
AvaII	GGWCC	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	337, 402
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	208, 322
BccI	CCATC	3 cut(s)	71, 172, 504
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	507
BcnI	CCSGG	2 cut(s)	104, 507
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	222, 336
BlsI	GCNGC	2 cut(s)	223, 337
Bme1390I	CCNGG	3 cut(s)	104, 130, 507
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	46, 101, 127, 245
BmrFI	CCNGG	3 cut(s)	104, 130, 507
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	2 cut(s)	337, 402
BpmI	CTGGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	104, 507
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 178, 331
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	2 cut(s)	183, 515
BseLI	CCNNNNNNNGG	3 cut(s)	78, 178, 331
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	329, 563
BseXI	GCAGC	2 cut(s)	208, 322
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	104, 506
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	78, 178, 331
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	379
BspCNI	CTCAG	2 cut(s)	328, 564
BspLI	GGNNCC	4 cut(s)	46, 101, 127, 245
BspMAI	CTGCAG	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	1 cut(s)	379
BssNAI	GTATAC	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	85, 352, 433, 536
Bst6I	CTCTTC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	315, 572
BstEII	GGTNACC	1 cut(s)	536
BstF5I	GGATG	2 cut(s)	183, 515
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	141
BstPI	GGTNACC	1 cut(s)	536
BstSCI	CCNGG	3 cut(s)	102, 128, 505
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	208, 322
BstV2I	GAAGAC	2 cut(s)	337, 402
BstZ17I	GTATAC	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	183, 515
BtsIMutI	CAGTG	2 cut(s)	90, 429
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	4 cut(s)	138, 211, 292, 397
CviJI	RGCY	6 cut(s)	107, 244, 335, 405, 505, 593
CviKI_1	RGCY	6 cut(s)	107, 244, 335, 405, 505, 593
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	2 cut(s)	315, 572
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	4 cut(s)	141, 214, 295, 400
FalI	AAGNNNNNCTT	2 cut(s)	394, 426
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	4 cut(s)	137, 210, 291, 396
FauNDI	CATATG	1 cut(s)	285
FblI	GTMKAC	2 cut(s)	18, 366
Fnu4HI	GCNGC	2 cut(s)	222, 336
FokI	GGATG	2 cut(s)	190, 522
Fsp4HI	GCNGC	2 cut(s)	222, 336
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	2 cut(s)	222, 336
GsuI	CTGGAG	1 cut(s)	155
HapII	CCGG	2 cut(s)	104, 506
Hin1II	CATG	4 cut(s)	141, 214, 295, 400
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	1 cut(s)	631
HpaII	CCGG	2 cut(s)	104, 506
HphI	GGTGA	2 cut(s)	460, 530
Hpy166II	GTNNAC	3 cut(s)	19, 367, 618
Hpy188I	TCNGA	2 cut(s)	582, 590
Hpy188III	TCNNGA	3 cut(s)	172, 230, 257
Hpy8I	GTNNAC	3 cut(s)	19, 367, 618
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	4 cut(s)	85, 352, 433, 536
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	4 cut(s)	53, 224, 338, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	315, 572
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	141, 214, 295, 400
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	249, 590
Lsp1109I	GCAGC	2 cut(s)	208, 322
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	4 cut(s)	118, 466, 484, 536
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	6 cut(s)	20, 68, 184, 337, 402, 544
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	4 cut(s)	183, 225, 523, 603
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	19, 504
MnlI	CCTC	6 cut(s)	35, 89, 168, 324, 551, 596
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	2 cut(s)	104, 506
MspR9I	CCNGG	3 cut(s)	104, 130, 507
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	2 cut(s)	104, 507
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	141, 214, 295, 400
NlaIV	GGNNCC	4 cut(s)	46, 101, 127, 245
NmuCI	GTSAC	4 cut(s)	118, 466, 484, 536
NspI	RCATGY	1 cut(s)	141
PaeI	GCATGC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	223, 337
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	4 cut(s)	46, 101, 127, 245
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	2 cut(s)	222, 336
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	3 cut(s)	104, 130, 507
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	153
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	4 cut(s)	183, 225, 523, 603
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	102, 128, 505
TaaI	ACNGT	4 cut(s)	85, 352, 433, 536
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	256, 366, 543
TasI	AATT	4 cut(s)	183, 225, 523, 603
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	2 cut(s)	90, 436
TseFI	GTSAC	4 cut(s)	118, 466, 484, 536
TseI	GCWGC	2 cut(s)	221, 335
Tsp45I	GTSAC	4 cut(s)	118, 466, 484, 536
TspDTI	ATGAA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	90, 436
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	44
XbaI	TCTAGA	1 cut(s)	229
XceI	RCATGY	1 cut(s)	141
XmiI	GTMKAC	2 cut(s)	18, 366
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.