Rorug05G0390500

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000603
Physical Location & Seq
Forward (+)
53120978 .. 53165031
44054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0390500.1

Sequence Viewer

Length: 4326 bp
ATGGCGGCTGCAATGGCCGGAGAAGACCTGATGAGGCAGTCGAGTAGCCGGAGGAGCTGGCGGTCGACGAGTGTGCGGGAAATGTGGAACGCGCCGGACGTGTTTCAGAGGAGCGGGCGGCAGCAGGCGGTGGATGAGGAGGAGGAGCTCAAGTGGGCCGCCATAGAGCGGTTGCCGACTTACGATAGGATGAGGAGGGGGATGTTGACTCAGGTGATGAGCAATGGTAGGATTATGCACGACACAGTTGATGTGGCGAATCTTGGCGCTCAGGATAAGAAGCAGTTGATGGAGAGCATACTCAAGGTTGTTGAGGACGATAACGAGAAGTTCTTGCAGAGACTCAGAGCCAGAAACGATAGGGTTGGTATTGAGGTTCCGAAAGTGGAGGTTCGATTCCAGAGCTTAGAGATTGAGGGAGATGCATATGTCGGCACAAGAGCTCTTCCAACTCTACTCAACTCTACTTTGAACGCACTAGAGGCATTAATTGGATTGGTTGGACTCTCACCGTCGAAGAAAAGAGTTGTTAAGATACTCCAAGATGTGAGCGGTATTGTGAAACCATCAAGGGTTACACTTCTTCTTGGACCTCCTTCTTCAGGAAAAACAACACTGCTAAAAGCTCTTGCTGGCAAACTCGATAAAGATCTAAGGGTAAGTGGGACTGTTACCTACTGTGGCCATGAATTTAAGGAGTTTGTACCTCAGAGAACTTCCGCTTACATTAGTCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACAATGGATTTCTCCGGACGTTGCCTCGGAGTTGGAACCAGGTATGATATGCTGGTAGAGTTGTCTAGAAGGGAGAAAGATTCAGGTATCAAACCTGATCCTGAAATCGATGCATTCATGAAAGCCACATCTATGTCGGGCCAGGAAACCAGTTTGATCACAGATTATGTTCTAAAGATACTTGGACTAGATATCTGTGCTGATATTATGGTGGGTGACGACATGAGAAGGGGTATCTCTGGAGGGCAAAAGAAGCGTGTAACTACGGGAGAAATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGACTGGACAGTTCCACTACCTTTCAGATTGTCAAGTTTATGAGACAGATGGTTCATATTATGGATGTATCAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACGTATGACCTTTTTGATGACATTATTCTTATTTCTGAGGGTCAAATTGTCTACCAAGGCCCACGTGAGAATGTTCTTGAGTTTTTTGAACATATGGGATTCAAATGCCCAGATAGAAAGGGTGTTGCTGACTTCTTGCAAGAAGTGACCTCAAAGAAGGATCAAGAGCAGTACTGGTATAAGAAGAACCAACCTTACAGATATGTCTCCGTACCTGATTTCGTAAGGGCTTTCACCTCTTTCCATGTTGGTCAACGGCTTGTGGAGGAACTAAGAGTTCCTTATGATAAAAGAACTACACATCCTGCTGCCTTGGTGAAAGAAAAGTATGGAATATCCAACATGGAGCTCTTCAAGGCATGTATGTCAAGGGAATGGCTGCTGATGAAGCGTAACTCTTTTGTGTACATCTTCAAAACTACCCAGATCACAATCATGGCTACAATTGCTTTGACTGTATTCTTAAGAACGGAAATGAAAGCTGGGACAGTAGAAGATTCTGCCAAATTTTGGGGAGCTCTGTTTTTCAGTCTCATTAATGTCATGTTTAACGGAATGGCAGAGCTTGCAATGACAGGTTTCAGGCTTCCTGTGTACTTTAAACAAAGAGATGCCTTGTTCTACCCTGGCTGGGCTTTTGGCTTGCCGATTTGGCTAACCAGAATTCCAATTTCACTGTTGGAATCTGGCATATGGATCATTTTTACATACTACACCATCGGATTTGCCCCTGCAGCCAGTAGGTTCTTTAAACAGTTCTTGGCTTTCTTCGGTATACATCAGATGGCACTCTCCCTCTTCCGTTTTATTGCTGCTCTTGGGAGATCAGAGGTTGTTTCAGGCACAATTGGTTCCTTTACTTTGCTAATGGTGTTTGTCCTAGGAGGTTTCATTGTTGCTAAAGATGACATTGAATCATGGATGATATGGGGCTACTATGTTTCACCTATGATGTACGGACAGAATGCAATTGCTATCAATGAATTTCTGGACAAAAGATGGAGTGCTCCTCTCGTCAACGCAAGTCAACCCACAGTAGGAAAGCTACTTCTCAAGCAAAGAGGCCTCTATACTGAAGAGTATTGGTATTGGATTTGTGTCGCAGCGCTCTTCGCGTTTTCTCTTCTGTTTAATGTTCTTTTCATCGCATGCTTGACCTTCTTAGATCCTCTCGGTGAAACTAAAACTTTGATTGAGAATGATGATGCTGAAAGCAACAGGAAGCGACGATCCAATCCTGAAGGTATTGACATGCAAGTGAGAAATGCTCAAGGAGGTCAAGCCAAAAGAGGAATGGTCTTGCCTTTCCAGCCCCTTTCACTTGCTTTCAACCATGTGAATTACTATGTGGATATGCCTGCTGAAATGAAAACCCAAGGGATTGAAGAGACCAGACTGCAACTACTGAGAGATATTAGTGGTGCATTTAGGCCAGGTGTTTTGACTGCATTAGTTGGTGTTAGTGGTGCTGGAAAGACCACCTTGATGGATGTCTTGGCTGGAAGAAAGACAGGGGGGTACATTGAAGGAAGCATTACCATCTCGGGTTACCCAAAGAACCAAGAGACATTTGCTCGGGTCAGCGGTTACTGTGAGCAGAATGACATTCATTCTCCATTTATTACTGTTTATGAATCTCTCCTATACTCTGCATGGCTGCGTCTTGCTAAAGATGTCAACACAGATACACGAAAGATGTTTGTTGATGAGGTTATGGACTTGGTCGAGCTTCATCCATTAAGGAATGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCAACTGAGCAAAGGAAAAGGCTCACCATTGCTGTGGAATTGGTTGCAAATCCTTCTATCATCTTCATGGATGAGCCAACTTCAGGTCTTGATGCTAGAGCAGCTGCAATTGTTATGCGTACTGTAAGAAACACAGTTGATACAGGACGAACCGTTGTTTGCACAATTCACCAACCTAGCATTGACATTTTTGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGACTTATGCTGGGCCTCTAGGTCGCCAATCTTACAAGCTTGTTGAATATTTTGAGGCTATTCCAGGGGTTCCCAAGATCAAAGAGGGTTACAATCCTGCTACATGGATGTTGGAGGTCAGCTCTGCTGCGGTTGAGACCCAACTAAACATCGACTTCGCAGAGATATATGCAAACTCAGAACTCTACAAGAGAAATCAGGACCTTATCAAGGAACTAAGCACACCTCAACCAGGGACCAAGGACCTTTACTTCCCCACCCAGTACTCCCAAACCTTTTTAACTCAGTGCAAGGCTTGCTTCTGGAAACAGCACTGGTCATACTGGAGGAACTCACGGTACAACGCCATTAGGTTTTTCATGACGGTTTGCATTGGCATATTATTCGGTGTTATCTTCTGGAGCAAAGGAGACCAAATAAACAAACAACAAGACCTGATCAATCTTTTGGGAGCTACCTATGCTGCAGTTCTTTTCCTCGGAGCTAGCAATGCCTCTGCCGTGCAATCTGTAGTGGCAGTTGAGCGAACAGTTTTCTACCGTGAAAGAGCTGCAGGAATGTACTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCTATTGAGACGATTTACGTTGCAATCCAAACCTTTGTGTATTCCTGTCTTCTGTATTCTATGATTGGGTACAACTGGAAGGTGGAGAAATTTTTGTACTTCTACTACTTCATGTTCATGTGCTTTACCTACTTCTCAATGTACGGGATGATGGTGGTTGCCCTAACTCCTGGCCATCAAATTGCTGCAATTGTCATGTCTTTCTTCATGAGCTTCTGGAACTTGTTCTCTGGTTTCCTCATCCCTAGACCGCTTATCCCCATCTGGTGGAGGTGGTATTACTGGGGTTCTCCAGTTGCTTGGACCATCTATGGCATCTTCGGATCTCAAGTTGGTGACTTGAAGAAGGAGATCGACTTGCCTACCGGAGGAAAACAAGCAGTGAATGTTTTCCTCAAGGAGTATTTGGGTTATGACTATGACTTCCTCATTCCTGTAGTGGTTGCTCATGTTGGTTGGGTCCTCCTCTTCTTCTTCGTCTTTGCCTACGGTATCAAGTACCTTAACTTCCAAAGGAGATAA

Protein Analysis

1441

Amino Acids

163.72

Weight (kDa)

8.22

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 106 - 154 2.5e-07 ABC-transporter N-terminal
ABC_tran PF00005 180 - 361 5.6e-14 ABC transporter
ABC2_membrane_7 PF19055 395 - 448 1e-05 ABC-2 type transporter
ABC2_membrane PF01061 516 - 728 3.1e-44 ABC-2 type transporter
PDR_assoc PF08370 733 - 797 9.3e-24 Plant PDR ABC transporter associated
ABC_tran PF00005 868 - 1020 4.7e-20 ABC transporter
ABC2_membrane PF01061 1165 - 1377 4e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1707, 4071
AccBSI CCGCTC 3 cut(s) 114, 169, 552
AccI GTMKAC 3 cut(s) 65, 1248, 1972
AccII CGCG 2 cut(s) 92, 2312
AccIII TCCGGA 1 cut(s) 785
AclWI GGATC 6 cut(s) 863, 1365, 1901, 2357, 2421, 4135
AcoI YGGCCR 3 cut(s) 15, 682, 3976
AcsI RAATTY 5 cut(s) 689, 1703, 1860, 2180, 3893
AcuI CTGAAG 4 cut(s) 585, 2292, 2457, 3042
AcvI CACGTG 1 cut(s) 1262
AfeI AGCGCT 1 cut(s) 2304
AflII CTTAAG 1 cut(s) 1660
AflIII ACRYGT 1 cut(s) 99
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 8 cut(s) 809, 912, 1822, 2629, 2959, 3274, 3442, 3973
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
AloI GAACNNNNNNTCC 2 cut(s) 1483, 1515
Alw21I GWGCWC 5 cut(s) 150, 445, 1548, 1717, 2206
AlwI GGATC 6 cut(s) 863, 1365, 1901, 2357, 2421, 4135
Ama87I CYCGRG 2 cut(s) 2740, 2772
Aor13HI TCCGGA 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 2304
AoxI GGCC 9 cut(s) 15, 156, 682, 910, 1255, 2260, 2627, 3224, 3976
ApoI RAATTY 5 cut(s) 689, 1703, 1860, 2180, 3893
AseI ATTAAT 2 cut(s) 488, 1734
Asp700I GAANNNNTTC 2 cut(s) 4028, 4193
AspA2I CCTAGG 1 cut(s) 2077
AspLEI GCGC 3 cut(s) 94, 269, 2305
AsuNHI GCTAGC 1 cut(s) 3695
AvaI CYCGRG 2 cut(s) 2740, 2772
AvaII GGWCC 7 cut(s) 590, 1055, 3412, 3447, 3454, 4107, 4264
AvrII CCTAGG 1 cut(s) 2077
BalI TGGCCA 2 cut(s) 684, 3978
BanII GRGCYC 4 cut(s) 150, 445, 1548, 1717
BarI GAAGNNNNNNTAC 1 cut(s) 4295
BbrPI CACGTG 1 cut(s) 1262
BbsI GAAGAC 2 cut(s) 30, 3845
Bbv12I GWGCWC 5 cut(s) 150, 445, 1548, 1717, 2206
BceAI ACGGC 2 cut(s) 1469, 3695
BcgI CGANNNNNNTGC 4 cut(s) 55, 89, 3577, 3611
BciT130I CCWGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
BclI TGATCA 2 cut(s) 927, 3648
BfaI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
BfmI CTRYAG 5 cut(s) 1929, 3675, 3720, 3762, 4239
BfoI RGCGCY 2 cut(s) 270, 2306
BfrI CTTAAG 1 cut(s) 1660
BglI GCCNNNNNGGC 1 cut(s) 1849
BglII AGATCT 1 cut(s) 649
BlnI CCTAGG 1 cut(s) 2077
BmcAI AGTACT 2 cut(s) 1370, 3476
Bme1390I CCNGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
Bme18I GGWCC 7 cut(s) 590, 1055, 3412, 3447, 3454, 4107, 4264
BmeT110I CYCGRG 2 cut(s) 2740, 2772
BmgBI CACGTC 1 cut(s) 100
BmiI GGNNCC 6 cut(s) 378, 808, 2050, 3282, 3448, 4265
BmrFI CCNGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
BmrI ACTGGG 2 cut(s) 3466, 4096
BmsI GCATC 6 cut(s) 412, 871, 1798, 2392, 3058, 4128
BmtI GCTAGC 1 cut(s) 3699
BmuI ACTGGG 2 cut(s) 3466, 4096
BpiI GAAGAC 2 cut(s) 30, 3845
BplI GAGNNNNNCTC 6 cut(s) 2191, 2223, 2449, 2481, 3317, 3349
BpmI CTGGAG 4 cut(s) 1032, 3556, 3631, 4080
Bpu10I CCTNAGC 2 cut(s) 270, 3798
BpuEI CTTGAG 7 cut(s) 134, 287, 1295, 2234, 2451, 4116, 4184
Bsa29I ATCGAT 1 cut(s) 879
BsaAI YACGTR 1 cut(s) 1262
BsaBI GATNNNNATC 2 cut(s) 648, 1628
BsaI GGTCTC 3 cut(s) 2579, 3341, 3615
BsaWI WCCGGW 2 cut(s) 785, 4169
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 3195, 3225
Bse3DI GCAATG 5 cut(s) 18, 229, 1773, 3003, 3706
Bse8I GATNNNNATC 2 cut(s) 648, 1628
BseAI TCCGGA 1 cut(s) 785
BseBI CCWGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
BseCI ATCGAT 1 cut(s) 879
BseJI GATNNNNATC 2 cut(s) 648, 1628
BseMI GCAATG 5 cut(s) 18, 229, 1773, 3003, 3706
BseRI GAGGAG 9 cut(s) 67, 124, 152, 155, 158, 208, 2196, 3216, 4259
BseYI CCCAGC 3 cut(s) 1679, 1827, 3221
BsgI GTGCAG 1 cut(s) 1173
Bsh1236I CGCG 2 cut(s) 92, 2312
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 9 cut(s) 17, 158, 684, 912, 1257, 2262, 2629, 3226, 3978
BshVI ATCGAT 1 cut(s) 879
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 5 cut(s) 150, 445, 1548, 1717, 2206
BsiHKCI CYCGRG 2 cut(s) 2740, 2772
BsiSI CCGG 5 cut(s) 18, 49, 95, 786, 4170
BslFI GGGAC 3 cut(s) 679, 1696, 3460
BsmBI CGTCTC 2 cut(s) 1190, 3806
BsmFI GGGAC 3 cut(s) 679, 1696, 3460
BsmI GAATGC 3 cut(s) 884, 2167, 2947
BsnI GGCC 9 cut(s) 17, 158, 684, 912, 1257, 2262, 2629, 3226, 3978
Bso31I GGTCTC 3 cut(s) 2579, 3341, 3615
BsoBI CYCGRG 2 cut(s) 2740, 2772
Bsp1286I GDGCHC 5 cut(s) 150, 445, 1548, 1717, 2206
Bsp13I TCCGGA 1 cut(s) 785
Bsp1407I TGTACA 1 cut(s) 1602
BspANI GGCC 9 cut(s) 17, 158, 684, 912, 1257, 2262, 2629, 3226, 3978
BspDI ATCGAT 1 cut(s) 879
BspEI TCCGGA 1 cut(s) 785
BspFNI CGCG 2 cut(s) 92, 2312
BspHI TCATGA 3 cut(s) 888, 3570, 4011
BspLI GGNNCC 6 cut(s) 378, 808, 2050, 3282, 3448, 4265
BspMAI CTGCAG 3 cut(s) 1933, 3679, 3766
BspOI GCTAGC 1 cut(s) 3699
BspPI GGATC 6 cut(s) 863, 1365, 1901, 2357, 2421, 4135
BspQI GCTCTTC 3 cut(s) 450, 1553, 2312
BspTI CTTAAG 1 cut(s) 1660
BspTNI GGTCTC 3 cut(s) 2579, 3341, 3615
BsrBI CCGCTC 3 cut(s) 114, 169, 552
BsrDI GCAATG 5 cut(s) 18, 229, 1773, 3003, 3706
BsrGI TGTACA 1 cut(s) 1602
BssNAI GTATAC 1 cut(s) 1973
BssT1I CCWWGG 5 cut(s) 1252, 1509, 2077, 2572, 3450
Bst1107I GTATAC 1 cut(s) 1973
Bst2UI CCWGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
Bst6I CTCTTC 8 cut(s) 450, 1553, 2000, 2268, 2312, 2325, 2577, 4277
BstAFI CTTAAG 1 cut(s) 1660
BstAPI GCANNNNNTGC 2 cut(s) 1763, 3507
BstAUI TGTACA 1 cut(s) 1602
BstBAI YACGTR 1 cut(s) 1262
BstEII GGTNACC 1 cut(s) 2744
BstENI CCTNNNNNAGG 4 cut(s) 600, 3419, 3441, 4170
BstFNI CGCG 2 cut(s) 92, 2312
BstH2I RGCGCY 2 cut(s) 270, 2306
BstHHI GCGC 3 cut(s) 94, 269, 2305
BstMCI CGRYCG 1 cut(s) 65
BstNI CCWGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
BstNSI RCATGY 3 cut(s) 1560, 2349, 2452
BstPI GGTNACC 1 cut(s) 2744
BstSCI CCNGG 8 cut(s) 809, 912, 1822, 2629, 2959, 3274, 3442, 3973
BstSFI CTRYAG 5 cut(s) 1929, 3675, 3720, 3762, 4239
BstUI CGCG 2 cut(s) 92, 2312
BstV2I GAAGAC 2 cut(s) 30, 3845
BstX2I RGATCY 3 cut(s) 649, 2362, 4127
BstXI CCANNNNNNTGG 3 cut(s) 2683, 3010, 4104
BstYI RGATCY 3 cut(s) 649, 2362, 4127
BstZ17I GTATAC 1 cut(s) 1973
Bsu15I ATCGAT 1 cut(s) 879
BsuRI GGCC 9 cut(s) 17, 158, 684, 912, 1257, 2262, 2629, 3226, 3978
BsuTUI ATCGAT 1 cut(s) 879
BtgZI GCGATG 1 cut(s) 2326
BtrI CACGTC 1 cut(s) 100
BtsI GCAGTG 2 cut(s) 614, 4191
BtsIMutI CAGTG 5 cut(s) 614, 1871, 3503, 3523, 4191
CciI TCATGA 3 cut(s) 888, 3570, 4011
CfoI GCGC 3 cut(s) 94, 269, 2305
ClaI ATCGAT 1 cut(s) 879
CseI GACGC 1 cut(s) 2846
CsiI ACCWGGT 1 cut(s) 809
DraI TTTAAA 2 cut(s) 1798, 1948
EaeI YGGCCR 3 cut(s) 15, 682, 3976
Eam1104I CTCTTC 8 cut(s) 450, 1553, 2000, 2268, 2312, 2325, 2577, 4277
EarI CTCTTC 8 cut(s) 450, 1553, 2000, 2268, 2312, 2325, 2577, 4277
Ecl136II GAGCTC 4 cut(s) 148, 443, 1546, 1715
Eco130I CCWWGG 5 cut(s) 1252, 1509, 2077, 2572, 3450
Eco147I AGGCCT 1 cut(s) 2262
Eco24I GRGCYC 4 cut(s) 150, 445, 1548, 1717
Eco31I GGTCTC 3 cut(s) 2579, 3341, 3615
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 7 cut(s) 590, 1055, 3412, 3447, 3454, 4107, 4264
Eco47III AGCGCT 1 cut(s) 2304
Eco53kI GAGCTC 4 cut(s) 148, 443, 1546, 1715
Eco57I CTGAAG 4 cut(s) 585, 2292, 2457, 3042
Eco72I CACGTG 1 cut(s) 1262
Eco88I CYCGRG 2 cut(s) 2740, 2772
Eco91I GGTNACC 1 cut(s) 2744
EcoICRI GAGCTC 4 cut(s) 148, 443, 1546, 1715
EcoNI CCTNNNNNAGG 4 cut(s) 600, 3419, 3441, 4170
EcoO109I RGGNCCY 3 cut(s) 3412, 3454, 4264
EcoO65I GGTNACC 1 cut(s) 2744
EcoRI GAATTC 1 cut(s) 1860
EcoRII CCWGG 8 cut(s) 809, 912, 1822, 2629, 2959, 3274, 3442, 3973
EcoRV GATATC 1 cut(s) 964
EcoT14I CCWWGG 5 cut(s) 1252, 1509, 2077, 2572, 3450
EcoT22I ATGCAT 3 cut(s) 427, 886, 3793
EcoT38I GRGCYC 4 cut(s) 150, 445, 1548, 1717
ErhI CCWWGG 5 cut(s) 1252, 1509, 2077, 2572, 3450
Esp3I CGTCTC 2 cut(s) 1190, 3806
FalI AAGNNNNNCTT 8 cut(s) 1462, 1494, 2663, 2695, 2929, 2961, 3494, 3526
FaqI GGGAC 3 cut(s) 679, 1696, 3460
FauI CCCGC 2 cut(s) 69, 107
FauNDI CATATG 3 cut(s) 427, 1290, 1889
FbaI TGATCA 2 cut(s) 927, 3648
FblI GTMKAC 3 cut(s) 65, 1248, 1972
FriOI GRGCYC 4 cut(s) 150, 445, 1548, 1717
FspBI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
GlaI GCGC 3 cut(s) 93, 268, 2304
GsaI CCCAGC 3 cut(s) 1683, 1831, 3225
GsuI CTGGAG 4 cut(s) 1032, 3556, 3631, 4080
HaeII RGCGCY 2 cut(s) 270, 2306
HaeIII GGCC 9 cut(s) 17, 158, 684, 912, 1257, 2262, 2629, 3226, 3978
HapII CCGG 5 cut(s) 18, 49, 95, 786, 4170
HgaI GACGC 1 cut(s) 2846
HhaI GCGC 3 cut(s) 94, 269, 2305
Hin6I GCGC 3 cut(s) 92, 267, 2303
HinP1I GCGC 3 cut(s) 92, 267, 2303
HincII GTYRAC 6 cut(s) 66, 207, 1451, 2215, 2225, 2875
HindII GTYRAC 6 cut(s) 66, 207, 1451, 2215, 2225, 2875
HindIII AAGCTT 2 cut(s) 3171, 3248
HpaII CCGG 5 cut(s) 18, 49, 95, 786, 4170
Hpy99I CGWCG 3 cut(s) 70, 517, 2427
HpyCH4IV ACGT 5 cut(s) 99, 790, 1199, 1261, 3822
HpySE526I ACGT 5 cut(s) 99, 790, 1199, 1261, 3822
HspAI GCGC 3 cut(s) 92, 267, 2303
Kpn2I TCCGGA 1 cut(s) 785
Ksp22I TGATCA 2 cut(s) 927, 3648
LguI GCTCTTC 3 cut(s) 450, 1553, 2312
LmnI GCTCC 9 cut(s) 54, 111, 145, 1543, 1712, 2209, 3612, 3662, 3692
LweI GCATC 6 cut(s) 412, 871, 1798, 2392, 3058, 4128
MabI ACCWGGT 1 cut(s) 809
MaeI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
MaeII ACGT 5 cut(s) 99, 790, 1199, 1261, 3822
MbiI CCGCTC 3 cut(s) 114, 169, 552
MfeI CAATTG 5 cut(s) 1641, 2043, 2166, 3084, 3993
MflI RGATCY 3 cut(s) 649, 2362, 4127
MhlI GDGCHC 5 cut(s) 150, 445, 1548, 1717, 2206
MlsI TGGCCA 2 cut(s) 684, 3978
MluNI TGGCCA 2 cut(s) 684, 3978
MlyI GAGTC 3 cut(s) 202, 336, 498
MmeI TCCRAC 8 cut(s) 473, 481, 784, 1033, 1560, 1857, 2932, 3303
Mox20I TGGCCA 2 cut(s) 684, 3978
Mph1103I ATGCAT 3 cut(s) 427, 886, 3793
MroI TCCGGA 1 cut(s) 785
MroXI GAANNNNTTC 2 cut(s) 4028, 4193
MscI TGGCCA 2 cut(s) 684, 3978
MslI CAYNNNNRTG 8 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3920
Msp20I TGGCCA 2 cut(s) 684, 3978
MspA1I CMGCKG 2 cut(s) 2781, 3080
MspCI CTTAAG 1 cut(s) 1660
MspI CCGG 5 cut(s) 18, 49, 95, 786, 4170
MspR9I CCNGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
MunI CAATTG 5 cut(s) 1641, 2043, 2166, 3084, 3993
Mva1269I GAATGC 3 cut(s) 884, 2167, 2947
MvaI CCWGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
MvnI CGCG 2 cut(s) 92, 2312
NdeI CATATG 3 cut(s) 427, 1290, 1889
NheI GCTAGC 1 cut(s) 3695
NlaIV GGNNCC 6 cut(s) 378, 808, 2050, 3282, 3448, 4265
NmuCI GTSAC 4 cut(s) 986, 1342, 3211, 4139
NsiI ATGCAT 3 cut(s) 427, 886, 3793
NspI RCATGY 3 cut(s) 1560, 2349, 2452
PaeI GCATGC 1 cut(s) 2349
PagI TCATGA 3 cut(s) 888, 3570, 4011
PceI AGGCCT 1 cut(s) 2262
PciSI GCTCTTC 3 cut(s) 450, 1553, 2312
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 3 cut(s) 884, 2167, 2947
PdmI GAANNNNTTC 2 cut(s) 4028, 4193
PfeI GAWTC 8 cut(s) 259, 396, 851, 1296, 1694, 1880, 2111, 2831
PflFI GACNNNGTC 1 cut(s) 2918
PflMI CCANNNNNTGG 2 cut(s) 1707, 4071
PfoI TCCNGGA 1 cut(s) 2959
PleI GAGTC 3 cut(s) 202, 336, 498
PmaCI CACGTG 1 cut(s) 1262
PmlI CACGTG 1 cut(s) 1262
PpsI GAGTC 3 cut(s) 202, 336, 498
Ppu21I YACGTR 1 cut(s) 1262
PpuMI RGGWCCY 3 cut(s) 3412, 3454, 4264
PshBI ATTAAT 2 cut(s) 488, 1734
Psp124BI GAGCTC 4 cut(s) 150, 445, 1548, 1717
Psp5II RGGWCCY 3 cut(s) 3412, 3454, 4264
Psp6I CCWGG 8 cut(s) 809, 912, 1822, 2629, 2959, 3274, 3442, 3973
PspCI CACGTG 1 cut(s) 1262
PspEI GGTNACC 1 cut(s) 2744
PspFI CCCAGC 3 cut(s) 1679, 1827, 3221
PspGI CCWGG 8 cut(s) 809, 912, 1822, 2629, 2959, 3274, 3442, 3973
PspN4I GGNNCC 6 cut(s) 378, 808, 2050, 3282, 3448, 4265
PspPPI RGGWCCY 3 cut(s) 3412, 3454, 4264
PsrI GAACNNNNNNTAC 4 cut(s) 1376, 1408, 3533, 3565
PstI CTGCAG 3 cut(s) 1933, 3679, 3766
PsuI RGATCY 3 cut(s) 649, 2362, 4127
PsyI GACNNNGTC 1 cut(s) 2918
PvuII CAGCTG 1 cut(s) 3080
RseI CAYNNNNRTG 8 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3920
SacI GAGCTC 4 cut(s) 150, 445, 1548, 1717
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 3 cut(s) 450, 1553, 2312
ScaI AGTACT 2 cut(s) 1370, 3476
SchI GAGTC 3 cut(s) 202, 336, 498
ScrFI CCNGG 8 cut(s) 811, 914, 1824, 2631, 2961, 3276, 3444, 3975
SduI GDGCHC 5 cut(s) 150, 445, 1548, 1717, 2206
SexAI ACCWGGT 1 cut(s) 809
SfaNI GCATC 6 cut(s) 412, 871, 1798, 2392, 3058, 4128
SfcI CTRYAG 5 cut(s) 1929, 3675, 3720, 3762, 4239
SinI GGWCC 7 cut(s) 590, 1055, 3412, 3447, 3454, 4107, 4264
SmiMI CAYNNNNRTG 8 cut(s) 750, 902, 1631, 2453, 2681, 3008, 3041, 3920
SmlI CTYRAG 8 cut(s) 149, 302, 1274, 1660, 2249, 2466, 4131, 4199
SmoI CTYRAG 8 cut(s) 149, 302, 1274, 1660, 2249, 2466, 4131, 4199
SphI GCATGC 1 cut(s) 2349
SseBI AGGCCT 1 cut(s) 2262
SspI AATATT 1 cut(s) 3260
SspMI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
SstI GAGCTC 4 cut(s) 150, 445, 1548, 1717
StuI AGGCCT 1 cut(s) 2262
StyD4I CCNGG 8 cut(s) 809, 912, 1822, 2629, 2959, 3274, 3442, 3973
StyI CCWWGG 5 cut(s) 1252, 1509, 2077, 2572, 3450
TaiI ACGT 5 cut(s) 102, 793, 1202, 1264, 3825
TaqI TCGA 9 cut(s) 41, 65, 394, 515, 642, 879, 2922, 3363, 4158
TatI WGTACW 6 cut(s) 1368, 1602, 1791, 3474, 3771, 3900
TauI GCSGC 3 cut(s) 8, 121, 161
TfiI GAWTC 8 cut(s) 259, 396, 851, 1296, 1694, 1880, 2111, 2831
TscAI CASTG 5 cut(s) 621, 1878, 3503, 3530, 4191
TseFI GTSAC 4 cut(s) 986, 1342, 3211, 4139
Tsp45I GTSAC 4 cut(s) 986, 1342, 3211, 4139
TspGWI ACGGA 5 cut(s) 1396, 1682, 1764, 1988, 2169
TspRI CASTG 5 cut(s) 621, 1878, 3503, 3530, 4191
Tth111I GACNNNGTC 1 cut(s) 2918
Van91I CCANNNNNTGG 2 cut(s) 1707, 4071
Vha464I CTTAAG 1 cut(s) 1660
VpaK11BI GGWCC 7 cut(s) 590, 1055, 3412, 3447, 3454, 4107, 4264
VspI ATTAAT 2 cut(s) 488, 1734
XagI CCTNNNNNAGG 4 cut(s) 600, 3419, 3441, 4170
XapI RAATTY 5 cut(s) 689, 1703, 1860, 2180, 3893
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 3 cut(s) 1560, 2349, 2452
XcmI CCANNNNNNNNNTGG 1 cut(s) 2488
XmaJI CCTAGG 1 cut(s) 2077
XmiI GTMKAC 3 cut(s) 65, 1248, 1972
XmnI GAANNNNTTC 2 cut(s) 4028, 4193
XspI CTAG 9 cut(s) 479, 837, 959, 2078, 3072, 3153, 3230, 3696, 4050
ZrmI AGTACT 2 cut(s) 1370, 3476
Zsp2I ATGCAT 3 cut(s) 427, 886, 3793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.