MD03G1076900.v1.1

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
6265022 .. 6265513
492 bp
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UTR
Exon/CDS
Intron
MD03G1076900.v1.1.491

Sequence Viewer

Length: 255 bp
ATGAGGAGCTTGTGTTCTGCTCTCTCACTCTCCACCGTTGCACTAGGAAACTACTTCAACTCTATTCTTGTCTCCATCGTTACAAAAACGACTACAAAGGACGGCAACCCTGGATGGATACCGGACAATTTGAACTACGGACACCTTGATTATTTCTTCTGGCTATTAGCAATGCTGAGTTTTCTTAACCTAGTAGTTTACCTCTTCATTTCCAAGTGGTACACGTATAAGAAGACCGTCGGGACTCTGCGTTGA

Protein Analysis

85

Amino Acids

9.61

Weight (kDa)

9.42

Isoelectric Point (pI)

11.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000603)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 2 cut(s) 58, 133
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 239
BccI CCATC 2 cut(s) 83, 108
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 2 cut(s) 44, 191
BfuI GTATCC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 37, 238
Bst6I CTCTTC 1 cut(s) 209
BstBAI YACGTR 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 239
BsuI GTATCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 119
Csp6I GTAC 1 cut(s) 220
CviJI RGCY 2 cut(s) 9, 163
CviKI_1 RGCY 2 cut(s) 9, 163
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 109
FaiI YATR 1 cut(s) 228
FokI GGATG 1 cut(s) 126
FspBI CTAG 2 cut(s) 44, 191
HapII CCGG 1 cut(s) 122
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 199, 222
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 199, 222
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 37, 238
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 224
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 96, 123, 135, 145
MaeI CTAG 2 cut(s) 44, 191
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 3 cut(s) 148, 196, 244
MluCI AATT 1 cut(s) 127
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 1 cut(s) 212
MseI TTAA 1 cut(s) 186
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 186
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 111
SetI ASST 5 cut(s) 11, 147, 192, 204, 227
Sse9I AATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 44, 191
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 37, 238
TaiI ACGT 1 cut(s) 227
TasI AATT 1 cut(s) 127
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 153
XspI CTAG 2 cut(s) 44, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.