Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Forward (+)

53179017 .. 53185981

Gene Structure 6965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0390600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4341 bp

ATGGCGGCGGCGGCAATGGCGGGAGAAGACTTAATGAGGCAGTCGAGCAGCCGGAGGAGCTGGCGGTCGACGAGTGTCCGAGAAATGTGGAACGCGCCGGACGTGTTCCAACGGAGCGTCCGGCAGCCGGTGCTGGACGAGGAGGAGGAGCTCAAGTGGGCGGCCATAGAGCGGTTGCCGACTTACGATAGGATGAGGAGGGGGATGTTGAGGAATGTGATGAGCAATGGAAGGGTTGTGGCTGAAGAAGTTGACGTTGCGCATCTTGGGGATCAAGATAAGAAGCAGTTGATGGAAAGCATACTTAAGGTTATTGAGGAGGACAACGAGAAGTTCTTGAAGAAGCTCAGGGCCAGAAATGACAGGGTTGGTATTGATATTCCTAAAGTTGAGGTTAGATTCCAGAATTTATCAATTGAGGGAGATGCGTTTGTAGGCACCAGAGCACTTCCGACTCTGTGGAATTCCACCTTGAACGCAGTAGAGGGAATACTGGGACTGGTTGGACTTTCACCATCGAAGAAAAGAGTTGTAAAGATACTACAAGATGTTAGTGGTATTATCAAACCAGCAAGGATGACACTTCTTCTTGGGCCTCCGGGATCAGGAAAAACAACATTGCTAAAAGCAGTTTCTGGCAAACTAGATAGGGATCTTAGGGTAAATGGGAAAGTGACTTACTGCGGCCATGAATTTAATGAATTTGTACCTCAGAGAACCTCTGCTTATATTAGCCAGCATGATCTTCATTATGGTGAGATGACAGTTCGTGAAACCTTTGATTTCTCCGGACGTTGCCTAGGAGTTGGAACAAGGTATGATATACTAGCAGAGTTGTCTAGACGGGAGAAAGATGCAGGTATCAAACCAGATCCTGCGATTGATGCATACATGAAAGCCACATCTGTGGCGGGCCAGGAAGCAAGTTTGATCACAGATTATGTCCTCAAGATACTTGGATTAGACATCTGTGCTGATATTATGGTGGGTGATGACATGAGAAGGGGAATATCCGGTGGACAAAAGAAGCGTGTCACGACTGGAGAAATGTTGGTTGGACCAGCAAAAGCATTTTTCATGGATGAAATATCAACAGGGTTGGACAGTTCCACAACCTTTCAGATTATCAAATACATGAGACAGATGGTTCACATTATGGATGTGTCAATGGTCATCTCTCTCTTGCAGCCTGCACCTGAGACGTACGATCTTTTTGATGATATTATCCTTCTTTCCGAGGGTCAGATTGTTTATCAAGGCCCACGTGAGAATGTCCTCGAGTTCTTTGAATATATGGGATTCAAATGCCCTGACAGAAAAGGTGTTGCAGACTTCTTGCAAGAAGTGACCTCAAGGAAGGACCAGGAACAATACTGGTGTAAGAAGAACCAACCTTACAGATTAGTCACAGTATCTGATTTTGCTCGGGCGTTCAGCTCCTTCCATGTTGGCCAACGGCTTGGGGAAGAACTAAGAGTTCCTTATGATAAAAGACATGCCCATCCTGCTGCTTTGGTCAAGGAAAAGTATGGAATATCCAATATGGAGCTCTTCAAAGCATGCTTTGCAAGGGAATGGCTCCTAATGAAGCGGAACTCTTTTGTGTACATATTCAAAACTACACAGATTGCCATCATGGCTACAATTGCTTTGACCGTATTCATAAGAACAGAAATGAAACCTGGGTCACTAGAAGGTTCAGCAAAGTATTGGGGGGCAATGTTTTTCAGTCTCATTAACGTCATGTTTAATGGAGTGGCAGAGCTTGCAATGACAGTTTTCCGGCTTCCAGTGTTCTTTAAACAGAGGGATGCCTTGTTCTATCCAGCGTGGGCTTTTGCCTTGCCCATTTGGGTGACCAGAATTCCTGTTTCAGTGTTGGAATCTGTGATATGGATCATTTTTACCTATTACACCATAGGATTTGCACCTGATCCTAGTAGGTTCTTCAAACAGTTATTGGCTTTCATTGGTATAAGTCAGATGGCACTCGCCCTCTTCCGTTTCATTGCAGCGCTTGGAAGATCAGATGTGGTTGCTAACACAATTGGTTCATTTACACTGCTATTGGTATTTATCCTAGGAGGTTTTATTGTTGCTAAAGATGACATCCAGTCATGGATGATTTGGGGCTACTATGTCTCACCTATGATGTATGGACAAAATGCAATTGCTATCAATGAATTTCTTGATAAAAGATGGGGCGGCGATCCCCCTAACTCCTCCACTCAGCATACTCTCGGAAAAGCCCTTCTCAGAGAAAGAGGCCTGTACACTGAAGAATATTGGTATTGGATTTGTGTTGGAGCGCTTTTTGGGTTTTCTTTTCTTTTCAATGGGCTGTTCATTGCAGCACTCACCTACTTGAACCCCCTTGGCGACAACAAAGGTCTGATTGTGGAGGATGATTCTGAAACCAAGAGGAGGCCACAATTGACAGAAGGTATTGATATGCAAGTGAGAACTGCAGAAGGAACTTCAAATGGACAAGCGAAGCGAGGAATGGTGTTGCCCTTCCAGCCCCTTTCACTCGCTTTCAGCCATGTGAACTACTATGTGGATATGCCTGCGGAGATGAAGACCCAAGGTATTGAAGAGAACCGACTGCAACTACTAAGAGATGTTAATGGGGCATTCAGGCCAGGAGTTCTCACTGCATTAGTTGGTGTTAGCGGTGCTGGAAAAACTACTTTGATGGATGTCTTAGCTGGAAGAAAGACTGGTGGATATATAGAAGGAAGTATTAGTATCTCAGGTTATCCAAAAAACCAAGCCACATTTGCTCGGGTTAGCGGTTATTGTGAACAGAACGACATTCATTCACCATATGTTACTGTTTATGAATCTCTGCTATACTCTGCCTGGCTACGTCTTTCTAAGGATGTCAACAAAAGCAAACGAAAGATGTTTGTTGATGAAGTTATGGACTTGGTGGAGCTTAACCCCTTGAGGAACGCTTTAGTTGGACTTCCAGGAGTTGATGGACTTTCAACTGAACAAAGAAAGAGGCTGACCATTGCTGTAGAATTGGTTGCAAATCCTTCCATTATCTTTATGGATGAGCCAACATCAGGGCTTGATGCTAGAGCAGCTGCCATTGTTATGCGTACTGTAAGAAACACTGTTGATACTGGACGAACTGTTGTCTGCACCATTCACCAACCTAGCATTGACATTTTCGAAGCTTTTGATGAGCTTTTCTTAATGAAAAGAGGAGGACAAGTGATTTATGCTGGACCTCTTGGTGAGCGGTCTCACAAACTTGTTGAATATTTTGAGGCCATTCCAGGAGTTCCCAAGATAAAAGACAGCTACAACCCTGCTACATGGATGTTAGAGGTCAGCTCTGCTGCAGTTGAGGCTCAAAATAACGTTGATTTTGCCGAAATATATTCGAACTCTGAGCTGTATAGGAGCGTTCAAGAACTTATCAAGGAATTGAGCACACCACTCCCAGGCTCCAAGGACCTTTACTTCCCCACCCAATACTCGCAAAGCTTCCCAACTCAATGCAAGGCTTGCTTTTGGAAACAACACTGGTCATACTGGAGGAATTCGCAGTACAATGCCATCAGGTTTTTCAACACAATAATGATCGGCGTACTCTTTGGTATCATCTTCTGGAAGAAAGGAAACGTGTTAGACACACAACAAGATATTATTAACCTTCTGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGTGCAATCTGTGGTTGCGATTGAGAGAACAGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAGAGTTGCCTTATGCATTTGCTCAGGTGGCCATTGAGACGATTTATGTTGCTATACAAACATTCATTTATTCCCTCCTTCTATTTACCATGATCGGCTATGAATTTAAAGTTGAGAAATTTTTGTATTTCTACTACTTTATATTCATGTGTTTTACATACATGTCAATGTATGGAATGATGGTGGTTGCCCTAACTCCCGGCCATCAAATCGCTGCAATTGTCATGTCCTTCTTCATGAGTTTCTGGAATTTGTTCTCCGGTTTCCTCCTCGCTAGACCGCTACTCCCGATATGGTGGAGGTGGTACTACTGGGGTTCTCCAATTGCTTGGACAATTTACGGTGTCCAAGCATCTCAATTCGGTGACCGGAACGATAAGGAGGTCTTACTTTCTACTGGAATCAGAGTAAGATTGGATCTATTCCTTAAGGAGACTTGGGGTTATGACCACGACTTCCTCATACCAGTTGTCGTTGCTCATGTTGGTTGGGTCCTCCTCTTCTTCTTTGTCTTTGCTTATGGTATCAAGTACCTTAACTTCCAGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

1446

Amino Acids

163.91

Weight (kDa)

8.25

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	107 - 155	4.3e-09	ABC-transporter N-terminal
ABC_tran	PF00005	181 - 362	1.2e-14	ABC transporter
ABC2_membrane_7	PF19055	396 - 447	9.9e-06	ABC-2 type transporter
ABC2_membrane	PF01061	517 - 729	1.3e-45	ABC-2 type transporter
PDR_assoc	PF08370	739 - 798	4.5e-26	Plant PDR ABC transporter associated
ABC_tran	PF00005	872 - 1024	8.3e-20	ABC transporter
ABC2_membrane	PF01061	1169 - 1383	4e-53	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	848
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	3 cut(s)	172, 3250, 3707
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	788
AclI	AACGTT	1 cut(s)	3372
AclWI	GGATC	8 cut(s)	279, 610, 660, 866, 1904, 1928, 2204, 4212
AcoI	YGGCCR	5 cut(s)	162, 685, 1450, 3816, 3988
AcuI	CTGAAG	2 cut(s)	264, 2298
AcvI	CACGTG	1 cut(s)	1265
AfaI	GTAC	9 cut(s)	708, 1205, 1607, 2273, 3109, 3563, 3603, 4094, 4319
AfeI	AGCGCT	2 cut(s)	2016, 2310
AfiI	CCNNNNNNNGG	7 cut(s)	127, 171, 605, 2424, 3071, 3455, 3706
AflII	CTTAAG	2 cut(s)	305, 4214
AflIII	ACRYGT	3 cut(s)	102, 3636, 3948
AhdI	GACNNNNNGTC	1 cut(s)	2113
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	8 cut(s)	915, 1362, 1681, 2641, 2861, 2971, 3286, 3454
AjuI	GAANNNNNNNTTGG	2 cut(s)	1038, 1070
AleI	CACNNNNGTG	1 cut(s)	905
AloI	GAACNNNNNNTCC	2 cut(s)	1802, 1834
Alw21I	GWGCWC	4 cut(s)	153, 448, 1551, 3446
Alw26I	GTCTC	7 cut(s)	1132, 1193, 1736, 2146, 3258, 3818, 4214
AlwI	GGATC	8 cut(s)	279, 610, 660, 866, 1904, 1928, 2204, 4212
AlwNI	CAGNNNCTG	3 cut(s)	635, 875, 1415
Ama87I	CYCGRG	3 cut(s)	1277, 1425, 2784
Aor13HI	TCCGGA	1 cut(s)	788
Aor51HI	AGCGCT	2 cut(s)	2016, 2310
Asp700I	GAANNNNTTC	3 cut(s)	3715, 3784, 4040
AspA2I	CCTAGG	2 cut(s)	799, 2080
AspLEI	GCGC	4 cut(s)	97, 262, 2017, 2311
AspS9I	GGNCC	9 cut(s)	351, 593, 913, 1058, 1259, 1360, 3236, 3466, 4279
AsuC2I	CCSGG	2 cut(s)	600, 3987
AsuII	TTCGAA	2 cut(s)	3180, 3395
AvaI	CYCGRG	3 cut(s)	1277, 1425, 2784
AvaII	GGWCC	5 cut(s)	1058, 1360, 3236, 3466, 4279
AvrII	CCTAGG	2 cut(s)	799, 2080
BalI	TGGCCA	2 cut(s)	1452, 3818
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	153, 1551
BarI	GAAGNNNNNNTAC	1 cut(s)	4310
BbrPI	CACGTG	1 cut(s)	1265
BbsI	GAAGAC	2 cut(s)	33, 2585
Bbv12I	GWGCWC	4 cut(s)	153, 448, 1551, 3446
BceAI	ACGGC	1 cut(s)	1472
BciT130I	CCWGG	8 cut(s)	917, 1364, 1683, 2643, 2863, 2973, 3288, 3456
BclI	TGATCA	1 cut(s)	930
BcnI	CCSGG	2 cut(s)	600, 3987
BcoDI	GTCTC	7 cut(s)	1132, 1193, 1736, 2146, 3258, 3818, 4214
BfmI	CTRYAG	3 cut(s)	2466, 3021, 3351
BfoI	RGCGCY	2 cut(s)	2018, 2312
BfrI	CTTAAG	2 cut(s)	305, 4214
BfuAI	ACCTGC	1 cut(s)	848
BglI	GCCNNNNNGGC	1 cut(s)	1637
BlnI	CCTAGG	2 cut(s)	799, 2080
Bme18I	GGWCC	5 cut(s)	1058, 1360, 3236, 3466, 4279
BmeRI	GACNNNNNGTC	1 cut(s)	2113
BmeT110I	CYCGRG	3 cut(s)	1277, 1425, 2784
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	9 cut(s)	351, 593, 913, 1058, 1259, 1360, 3236, 3466, 4279
BmiI	GGNNCC	4 cut(s)	439, 1580, 3460, 4280
BmrI	ACTGGG	2 cut(s)	503, 4108
BmsI	GCATC	7 cut(s)	271, 415, 844, 874, 1801, 3070, 4148
BmuI	ACTGGG	2 cut(s)	503, 4108
BoxI	GACNNNNGTC	1 cut(s)	74
BpiI	GAAGAC	2 cut(s)	33, 2585
BplI	GAGNNNNNCTC	2 cut(s)	3329, 3361
BpmI	CTGGAG	2 cut(s)	1062, 3568
Bpu10I	CCTNAGC	2 cut(s)	347, 3810
Bpu14I	TTCGAA	2 cut(s)	3180, 3395
BpuEI	CTTGAG	4 cut(s)	137, 932, 1336, 2968
BpuMI	CCSGG	2 cut(s)	600, 3987
BsaAI	YACGTR	1 cut(s)	1265
BsaBI	GATNNNNATC	3 cut(s)	651, 1631, 1895
BsaI	GGTCTC	1 cut(s)	3258
BsaJI	CCNNGG	9 cut(s)	799, 1236, 1682, 2080, 2374, 2584, 3454, 3462, 3700
BsaWI	WCCGGW	4 cut(s)	788, 1013, 4046, 4155
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 3207, 3237, 4056, 4086
Bsc4I	CCNNNNNNNGG	7 cut(s)	127, 171, 605, 2424, 3071, 3455, 3706
Bse118I	RCCGGY	1 cut(s)	127
Bse3DI	GCAATG	8 cut(s)	21, 232, 617, 1725, 1776, 2007, 2346, 3015
Bse8I	GATNNNNATC	3 cut(s)	651, 1631, 1895
BseAI	TCCGGA	1 cut(s)	788
BseBI	CCWGG	8 cut(s)	917, 1364, 1683, 2643, 2863, 2973, 3288, 3456
BseDI	CCNNGG	9 cut(s)	799, 1236, 1682, 2080, 2374, 2584, 3454, 3462, 3700
BseJI	GATNNNNATC	3 cut(s)	651, 1631, 1895
BseLI	CCNNNNNNNGG	7 cut(s)	127, 171, 605, 2424, 3071, 3455, 3706
BseMI	GCAATG	8 cut(s)	21, 232, 617, 1725, 1776, 2007, 2346, 3015
BseMII	CTCAG	8 cut(s)	361, 725, 1188, 2243, 2269, 2766, 3393, 3824
BsgI	GTGCAG	2 cut(s)	1176, 3133
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	437
BsiEI	CGRYCG	1 cut(s)	68
BsiHKAI	GWGCWC	4 cut(s)	153, 448, 1551, 3446
BsiHKCI	CYCGRG	3 cut(s)	1277, 1425, 2784
BsiWI	CGTACG	1 cut(s)	1203
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	7 cut(s)	127, 171, 605, 2424, 3071, 3455, 3706
BsmAI	GTCTC	7 cut(s)	1132, 1193, 1736, 2146, 3258, 3818, 4214
BsmBI	CGTCTC	2 cut(s)	1193, 3818
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	2633
Bso31I	GGTCTC	1 cut(s)	3258
BsoBI	CYCGRG	3 cut(s)	1277, 1425, 2784
Bsp119I	TTCGAA	2 cut(s)	3180, 3395
Bsp1286I	GDGCHC	4 cut(s)	153, 448, 1551, 3446
Bsp13I	TCCGGA	1 cut(s)	788
Bsp1407I	TGTACA	2 cut(s)	1605, 2271
BspCNI	CTCAG	8 cut(s)	360, 724, 1189, 2242, 2268, 2765, 3394, 3823
BspEI	TCCGGA	1 cut(s)	788
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	4023
BspLI	GGNNCC	4 cut(s)	439, 1580, 3460, 4280
BspMAI	CTGCAG	2 cut(s)	2470, 3355
BspMI	ACCTGC	1 cut(s)	848
BspPI	GGATC	8 cut(s)	279, 610, 660, 866, 1904, 1928, 2204, 4212
BspQI	GCTCTTC	1 cut(s)	1556
BspT104I	TTCGAA	2 cut(s)	3180, 3395
BspT107I	GGYRCC	1 cut(s)	437
BspTI	CTTAAG	2 cut(s)	305, 4214
BspTNI	GGTCTC	1 cut(s)	3258
BsrBI	CCGCTC	3 cut(s)	172, 3250, 3707
BsrDI	GCAATG	8 cut(s)	21, 232, 617, 1725, 1776, 2007, 2346, 3015
BsrFI	RCCGGY	1 cut(s)	127
BsrGI	TGTACA	2 cut(s)	1605, 2271
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	9 cut(s)	799, 1236, 1682, 2080, 2374, 2584, 3454, 3462, 3700
BssT1I	CCWWGG	6 cut(s)	799, 2080, 2374, 2584, 3462, 3700
Bst2UI	CCWGG	8 cut(s)	917, 1364, 1683, 2643, 2863, 2973, 3288, 3456
Bst6I	CTCTTC	4 cut(s)	1556, 2003, 2589, 4292
BstAFI	CTTAAG	2 cut(s)	305, 4214
BstAPI	GCANNNNNTGC	4 cut(s)	130, 1565, 1766, 3519
BstAUI	TGTACA	2 cut(s)	1605, 2271
BstBAI	YACGTR	1 cut(s)	1265
BstBI	TTCGAA	2 cut(s)	3180, 3395
BstC8I	GCNNGC	8 cut(s)	62, 737, 913, 1191, 1561, 1767, 2568, 3520
BstEII	GGTNACC	2 cut(s)	1855, 4151
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	2 cut(s)	2018, 2312
BstHHI	GCGC	4 cut(s)	97, 262, 2017, 2311
BstMAI	GTCTC	7 cut(s)	1132, 1193, 1736, 2146, 3258, 3818, 4214
BstMCI	CGRYCG	1 cut(s)	68
BstNI	CCWGG	8 cut(s)	917, 1364, 1683, 2643, 2863, 2973, 3288, 3456
BstNSI	RCATGY	3 cut(s)	1499, 1563, 3952
BstPAI	GACNNNNGTC	1 cut(s)	74
BstPI	GGTNACC	2 cut(s)	1855, 4151
BstSFI	CTRYAG	3 cut(s)	2466, 3021, 3351
BstUI	CGCG	1 cut(s)	95
BstV2I	GAAGAC	2 cut(s)	33, 2585
BstX2I	RGATCY	3 cut(s)	652, 871, 4204
BstXI	CCANNNNNNTGG	3 cut(s)	907, 1460, 4116
BstYI	RGATCY	3 cut(s)	652, 871, 4204
BtrI	CACGTC	1 cut(s)	103
BtsI	GCAGTG	2 cut(s)	2060, 2652
BtsIMutI	CAGTG	7 cut(s)	1797, 1881, 2060, 2274, 2652, 3120, 3535
BveI	ACCTGC	1 cut(s)	848
Cac8I	GCNNGC	8 cut(s)	62, 737, 913, 1191, 1561, 1767, 2568, 3520
CaiI	CAGNNNCTG	3 cut(s)	635, 875, 1415
CciI	TCATGA	1 cut(s)	4023
CfoI	GCGC	4 cut(s)	97, 262, 2017, 2311
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	9 cut(s)	351, 593, 913, 1058, 1259, 1360, 3236, 3466, 4279
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	9 cut(s)	707, 1204, 1606, 2272, 3108, 3562, 3602, 4093, 4318
CviQI	GTAC	9 cut(s)	707, 1204, 1606, 2272, 3108, 3562, 3602, 4093, 4318
DraI	TTTAAA	2 cut(s)	1801, 3895
DriI	GACNNNNNGTC	1 cut(s)	2113
EaeI	YGGCCR	5 cut(s)	162, 685, 1450, 3816, 3988
Eam1104I	CTCTTC	4 cut(s)	1556, 2003, 2589, 4292
Eam1105I	GACNNNNNGTC	1 cut(s)	2113
EarI	CTCTTC	4 cut(s)	1556, 2003, 2589, 4292
Ecl136II	GAGCTC	2 cut(s)	151, 1549
Eco130I	CCWWGG	6 cut(s)	799, 2080, 2374, 2584, 3462, 3700
Eco147I	AGGCCT	1 cut(s)	2268
Eco24I	GRGCYC	2 cut(s)	153, 1551
Eco31I	GGTCTC	1 cut(s)	3258
Eco47I	GGWCC	5 cut(s)	1058, 1360, 3236, 3466, 4279
Eco47III	AGCGCT	2 cut(s)	2016, 2310
Eco53kI	GAGCTC	2 cut(s)	151, 1549
Eco57I	CTGAAG	2 cut(s)	264, 2298
Eco72I	CACGTG	1 cut(s)	1265
Eco88I	CYCGRG	3 cut(s)	1277, 1425, 2784
Eco91I	GGTNACC	2 cut(s)	1855, 4151
EcoICRI	GAGCTC	2 cut(s)	151, 1549
EcoO109I	RGGNCCY	2 cut(s)	3466, 4279
EcoO65I	GGTNACC	2 cut(s)	1855, 4151
EcoRI	GAATTC	3 cut(s)	463, 1863, 3553
EcoRII	CCWGG	8 cut(s)	915, 1362, 1681, 2641, 2861, 2971, 3286, 3454
EcoT14I	CCWWGG	6 cut(s)	799, 2080, 2374, 2584, 3462, 3700
EcoT22I	ATGCAT	2 cut(s)	889, 3805
EcoT38I	GRGCYC	2 cut(s)	153, 1551
ErhI	CCWWGG	6 cut(s)	799, 2080, 2374, 2584, 3462, 3700
Esp3I	CGTCTC	2 cut(s)	1193, 3818
FalI	AAGNNNNNCTT	6 cut(s)	1465, 1497, 3506, 3538, 4157, 4189
FaqI	GGGAC	1 cut(s)	510
FauI	CCCGC	3 cut(s)	13, 904, 3700
FauNDI	CATATG	1 cut(s)	2827
FbaI	TGATCA	1 cut(s)	930
FblI	GTMKAC	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	153, 1551
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	4 cut(s)	96, 261, 2016, 2310
GsuI	CTGGAG	2 cut(s)	1062, 3568
HaeII	RGCGCY	2 cut(s)	2018, 2312
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	4 cut(s)	97, 262, 2017, 2311
Hin6I	GCGC	4 cut(s)	95, 260, 2015, 2309
HinP1I	GCGC	4 cut(s)	95, 260, 2015, 2309
HincII	GTYRAC	3 cut(s)	69, 253, 2887
HindII	GTYRAC	3 cut(s)	69, 253, 2887
HindIII	AAGCTT	2 cut(s)	3183, 3496
HinfI	GANTC	7 cut(s)	399, 454, 1299, 1883, 2408, 2843, 4188
Hpy166II	GTNNAC	9 cut(s)	69, 253, 1019, 1150, 1606, 2274, 2548, 2804, 2887
Hpy8I	GTNNAC	9 cut(s)	69, 253, 1019, 1150, 1606, 2274, 2548, 2804, 2887
Hpy99I	CGWCG	1 cut(s)	73
HpyCH4IV	ACGT	9 cut(s)	102, 255, 793, 1202, 1264, 1740, 2869, 3372, 3636
HpySE526I	ACGT	9 cut(s)	102, 255, 793, 1202, 1264, 1740, 2869, 3372, 3636
HspAI	GCGC	4 cut(s)	95, 260, 2015, 2309
Kpn2I	TCCGGA	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	930
LguI	GCTCTTC	1 cut(s)	1556
LweI	GCATC	7 cut(s)	271, 415, 844, 874, 1801, 3070, 4148
MaeII	ACGT	9 cut(s)	102, 255, 793, 1202, 1264, 1740, 2869, 3372, 3636
MaeIII	GTNAC	8 cut(s)	673, 1033, 1345, 1405, 1686, 1855, 2830, 4151
MbiI	CCGCTC	3 cut(s)	172, 3250, 3707
MfeI	CAATTG	7 cut(s)	414, 1644, 2046, 2169, 2432, 4005, 4110
MflI	RGATCY	3 cut(s)	652, 871, 4204
MhlI	GDGCHC	4 cut(s)	153, 448, 1551, 3446
MlsI	TGGCCA	2 cut(s)	1452, 3818
MluNI	TGGCCA	2 cut(s)	1452, 3818
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	9 cut(s)	133, 476, 484, 787, 1036, 1080, 1860, 2284, 2944
Mox20I	TGGCCA	2 cut(s)	1452, 3818
Mph1103I	ATGCAT	2 cut(s)	889, 3805
MroI	TCCGGA	1 cut(s)	788
MroXI	GAANNNNTTC	3 cut(s)	3715, 3784, 4040
MscI	TGGCCA	2 cut(s)	1452, 3818
MslI	CAYNNNNRTG	6 cut(s)	753, 905, 1853, 3101, 3590, 3953
Msp20I	TGGCCA	2 cut(s)	1452, 3818
MspA1I	CMGCKG	1 cut(s)	3092
MspCI	CTTAAG	2 cut(s)	305, 4214
MunI	CAATTG	7 cut(s)	414, 1644, 2046, 2169, 2432, 4005, 4110
Mva1269I	GAATGC	1 cut(s)	2633
MvaI	CCWGG	8 cut(s)	917, 1364, 1683, 2643, 2863, 2973, 3288, 3456
MvnI	CGCG	1 cut(s)	95
NciI	CCSGG	2 cut(s)	600, 3987
NdeI	CATATG	1 cut(s)	2827
NlaIV	GGNNCC	4 cut(s)	439, 1580, 3460, 4280
NmuCI	GTSAC	7 cut(s)	673, 1033, 1345, 1405, 1686, 1855, 4151
NsbI	TGCGCA	1 cut(s)	261
NsiI	ATGCAT	2 cut(s)	889, 3805
NspI	RCATGY	3 cut(s)	1499, 1563, 3952
NspV	TTCGAA	2 cut(s)	3180, 3395
OliI	CACNNNNGTG	1 cut(s)	905
PaeI	GCATGC	1 cut(s)	1563
PaeR7I	CTCGAG	1 cut(s)	1277
PagI	TCATGA	1 cut(s)	4023
PceI	AGGCCT	1 cut(s)	2268
PciI	ACATGT	1 cut(s)	3948
PciSI	GCTCTTC	1 cut(s)	1556
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	2633
PdmI	GAANNNNTTC	3 cut(s)	3715, 3784, 4040
PfeI	GAWTC	6 cut(s)	399, 1299, 1883, 2408, 2843, 4188
Pfl23II	CGTACG	1 cut(s)	1203
PfoI	TCCNGGA	3 cut(s)	598, 2971, 3286
PleI	GAGTC	1 cut(s)	448
PmaCI	CACGTG	1 cut(s)	1265
PmlI	CACGTG	1 cut(s)	1265
PpsI	GAGTC	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	1265
PpuMI	RGGWCCY	2 cut(s)	3466, 4279
PscI	ACATGT	1 cut(s)	3948
PshAI	GACNNNNGTC	1 cut(s)	74
Psp124BI	GAGCTC	2 cut(s)	153, 1551
Psp1406I	AACGTT	1 cut(s)	3372
Psp5II	RGGWCCY	2 cut(s)	3466, 4279
Psp6I	CCWGG	8 cut(s)	915, 1362, 1681, 2641, 2861, 2971, 3286, 3454
PspCI	CACGTG	1 cut(s)	1265
PspEI	GGTNACC	2 cut(s)	1855, 4151
PspGI	CCWGG	8 cut(s)	915, 1362, 1681, 2641, 2861, 2971, 3286, 3454
PspLI	CGTACG	1 cut(s)	1203
PspN4I	GGNNCC	4 cut(s)	439, 1580, 3460, 4280
PspPI	GGNCC	9 cut(s)	351, 593, 913, 1058, 1259, 1360, 3236, 3466, 4279
PspPPI	RGGWCCY	2 cut(s)	3466, 4279
PspXI	VCTCGAGB	1 cut(s)	1277
PsrI	GAACNNNNNNTAC	2 cut(s)	1379, 1411
PstI	CTGCAG	2 cut(s)	2470, 3355
PstNI	CAGNNNCTG	3 cut(s)	635, 875, 1415
PsuI	RGATCY	3 cut(s)	652, 871, 4204
PvuII	CAGCTG	1 cut(s)	3092
RsaI	GTAC	9 cut(s)	708, 1205, 1607, 2273, 3109, 3563, 3603, 4094, 4319
RsaNI	GTAC	9 cut(s)	707, 1204, 1606, 2272, 3108, 3562, 3602, 4093, 4318
RseI	CAYNNNNRTG	6 cut(s)	753, 905, 1853, 3101, 3590, 3953
SacI	GAGCTC	2 cut(s)	153, 1551
SalI	GTCGAC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	1556
Sau96I	GGNCC	9 cut(s)	351, 593, 913, 1058, 1259, 1360, 3236, 3466, 4279
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	4 cut(s)	153, 448, 1551, 3446
SfaNI	GCATC	7 cut(s)	271, 415, 844, 874, 1801, 3070, 4148
SfcI	CTRYAG	3 cut(s)	2466, 3021, 3351
Sfr274I	CTCGAG	1 cut(s)	1277
SfuI	TTCGAA	2 cut(s)	3180, 3395
SinI	GGWCC	5 cut(s)	1058, 1360, 3236, 3466, 4279
SlaI	CTCGAG	1 cut(s)	1277
SmiMI	CAYNNNNRTG	6 cut(s)	753, 905, 1853, 3101, 3590, 3953
SmlI	CTYRAG	7 cut(s)	152, 305, 947, 1277, 1351, 2947, 4214
SmoI	CTYRAG	7 cut(s)	152, 305, 947, 1277, 1351, 2947, 4214
SphI	GCATGC	1 cut(s)	1563
SseBI	AGGCCT	1 cut(s)	2268
SspI	AATATT	2 cut(s)	2285, 3272
SstI	GAGCTC	2 cut(s)	153, 1551
StuI	AGGCCT	1 cut(s)	2268
StyI	CCWWGG	6 cut(s)	799, 2080, 2374, 2584, 3462, 3700
TaiI	ACGT	9 cut(s)	105, 258, 796, 1205, 1267, 1743, 2872, 3375, 3639
TaqI	TCGA	6 cut(s)	44, 68, 518, 1278, 3180, 3395
TatI	WGTACW	3 cut(s)	1605, 2271, 3561
TauI	GCSGC	6 cut(s)	8, 11, 14, 164, 687, 2208
TfiI	GAWTC	6 cut(s)	399, 1299, 1883, 2408, 2843, 4188
TscAI	CASTG	7 cut(s)	1797, 1881, 2067, 2281, 2659, 3127, 3542
TseFI	GTSAC	7 cut(s)	673, 1033, 1345, 1405, 1686, 1855, 4151
Tsp45I	GTSAC	7 cut(s)	673, 1033, 1345, 1405, 1686, 1855, 4151
TspGWI	ACGGA	2 cut(s)	127, 1991
TspRI	CASTG	7 cut(s)	1797, 1881, 2067, 2281, 2659, 3127, 3542
Vha464I	CTTAAG	2 cut(s)	305, 4214
VpaK11BI	GGWCC	5 cut(s)	1058, 1360, 3236, 3466, 4279
XbaI	TCTAGA	1 cut(s)	839
XceI	RCATGY	3 cut(s)	1499, 1563, 3952
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3052
XhoI	CTCGAG	1 cut(s)	1277
XmaJI	CCTAGG	2 cut(s)	799, 2080
XmiI	GTMKAC	1 cut(s)	68
XmnI	GAANNNNTTC	3 cut(s)	3715, 3784, 4040
Zsp2I	ATGCAT	2 cut(s)	889, 3805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.