Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Reverse (-)

53100234 .. 53101487

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0390300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAGGCAAGACCAATACTCCAAGCCGGATTGTTTTGGAGAATTGGTAATGGTACTTCTGTGAAAATTTGGGATGATGAGTGGATTCCAAATGTTGCAGCTTACTCACTAGCTAGACCGCCTGATACTGTGTTTGAGACAGTTTCGGACCTGTTGGATACAAGTTCATGGTCCTGGGATCCTGTTGCTGTGCATGCTTGTTTTGACAATGATGTAGCTCTGAATGTTCTTTCTATTCCCTTGAGTAGACGCTTTGCTTCGGACAGGGTTGCATGGAAATTGGACAAGAGAGGTTACTTCTCAGTTAAGTCTGCGTACACAATTGCTCGTGAATTTTCCATTGGTAACATCTTTGCTTCATCATCAACTGGCGACCCTTATGCTCCACTATGGAAGGCTTTGTGGAAAGCTAAGGTTCCAAACAAGGTGGCTATATTTGGTTGGCGAGCAGCTCACAACCTTCTTCCCACTAGGGTGGCTTTGACTTTGAAAGGTTACACGGGTGAGTTGAATTGTGTCGTGTGTTCACAGGCAGTTGAAACACTTGAACACTTGTTCTGTGATTGCTATATTGCTCGTGCTATGTGGAGTGTCTCACCTTTCTTTATTCAGTCATCTAGTCTACCATGGAAAGAATGGTTCCTGGAGAGGGCTAATTCTCTGGCCTCAACTCTTTTCGATAAGTTGCTAATTCTCCTATGGAGTGTTTGGAGAAATAGAAATGATATTCTGTGGCGGAATCGTGCTCAAGCTACCTCACGTCTGGTGGCCTCTTCCTTGGCTTGGTATGAGGAATATTTGCAAGCTAATTTGTCTGTGTGTTCTTCTCCGAGTCGACAGAGGTTAGATAAAAAATGGAGCCCTCCTGTTGGTGACACTTTGAAACTAAACGTAGATGGTGCCTTTCTGCCCTCTTTTCCTTATGGTGGCATTGGGGGTGTTCTTAGGAACTCTCAAGGGCTATTCATTGCTGCTTTCTCTTACAGGATGAACTTTGTTAGTTCTGCATTACACTCCGAGCTGCTGGCTTTAAAACAAGGTTTGCTATTCCTGCAAGTCATGCAAGTAACAAAAGCAGTGGTTGAAAGTGACTGCCTAGTAGCAGTGCAGGCTATCAACAACGATGTGGTTGACATATCTCCTCTTAGTACTTTAATTGCAGAGGTTAAAGGTCTGGTAATTTCTAGTGATGATATCTGTATTAGTTATGCCTCTCGTCAGGCTAATACAGTAGCTCATAGGCTTGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

417

Amino Acids

46.47

Weight (kDa)

8.55

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	100 - 196	1.4e-18	zinc-binding in reverse transcriptase
RVT_3	PF13456	297 - 417	2.2e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	899
AccI	GTMKAC	3 cut(s)	247, 622, 835
AciI	CCGC	2 cut(s)	119, 736
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	2 cut(s)	66, 332
AfaI	GTAC	3 cut(s)	55, 317, 1150
AfiI	CCNNNNNNNGG	4 cut(s)	649, 783, 869, 926
AgsI	TTSAA	6 cut(s)	490, 511, 539, 548, 883, 1085
AjiI	CACGTC	1 cut(s)	761
AjnI	CCWGG	2 cut(s)	173, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AleI	CACNNNNGTG	1 cut(s)	473
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	2 cut(s)	131, 598
AlwI	GGATC	2 cut(s)	173, 186
AoxI	GGCC	2 cut(s)	663, 768
ApeKI	GCWGC	4 cut(s)	98, 449, 971, 1021
ApoI	RAATTY	2 cut(s)	66, 332
AspS9I	GGNCC	2 cut(s)	148, 171
AsuHPI	GGTGA	3 cut(s)	515, 588, 884
AsuNHI	GCTAGC	1 cut(s)	1247
AvaII	GGWCC	2 cut(s)	148, 171
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BamHI	GGATCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	899
BanII	GRGCYC	1 cut(s)	863
BarI	GAAGNNNNNNTAC	2 cut(s)	40, 72
BauI	CACGAG	2 cut(s)	327, 576
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	4 cut(s)	110, 461, 958, 1008
BccI	CCATC	1 cut(s)	890
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	2 cut(s)	175, 644
BciVI	GTATCC	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	131, 598
BfaI	CTAG	8 cut(s)	110, 114, 471, 618, 1097, 1185, 1248, 1252
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	4 cut(s)	99, 450, 972, 1022
BlsI	GCNGC	4 cut(s)	100, 451, 973, 1023
BmcAI	AGTACT	1 cut(s)	1150
Bme1390I	CCNGG	2 cut(s)	175, 644
Bme18I	GGWCC	2 cut(s)	148, 171
BmgBI	CACGTC	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	148, 171
BmiI	GGNNCC	5 cut(s)	180, 417, 641, 860, 901
BmrFI	CCNGG	2 cut(s)	175, 644
BmtI	GCTAGC	1 cut(s)	1251
BpmI	CTGGAG	1 cut(s)	665
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	3 cut(s)	262, 732, 939
BsaJI	CCNNGG	3 cut(s)	174, 626, 777
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 33, 61
Bsc4I	CCNNNNNNNGG	4 cut(s)	649, 783, 869, 926
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	2 cut(s)	175, 644
BseDI	CCNNGG	3 cut(s)	174, 626, 777
BseGI	GGATG	2 cut(s)	79, 993
BseLI	CCNNNNNNNGG	4 cut(s)	649, 783, 869, 926
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	1131
BseXI	GCAGC	4 cut(s)	110, 461, 958, 1008
BsgI	GTGCAG	1 cut(s)	1127
BshFI	GGCC	2 cut(s)	665, 770
BshNI	GGYRCC	1 cut(s)	899
BsiHKAI	GWGCWC	1 cut(s)	748
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	4 cut(s)	649, 783, 869, 926
BsmAI	GTCTC	2 cut(s)	131, 598
BsnI	GGCC	2 cut(s)	665, 770
Bsp1286I	GDGCHC	2 cut(s)	748, 863
Bsp143I	GATC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	2 cut(s)	119, 736
BspANI	GGCC	2 cut(s)	665, 770
BspCNI	CTCAG	1 cut(s)	314
BspLI	GGNNCC	5 cut(s)	180, 417, 641, 860, 901
BspOI	GCTAGC	1 cut(s)	1251
BspPI	GGATC	2 cut(s)	173, 186
BspT107I	GGYRCC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	966
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	174, 626, 777
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	2 cut(s)	327, 576
BssT1I	CCWWGG	2 cut(s)	626, 777
Bst2BI	CACGAG	2 cut(s)	327, 576
Bst2UI	CCWGG	2 cut(s)	175, 644
Bst4CI	ACNGT	3 cut(s)	130, 142, 1231
Bst6I	CTCTTC	1 cut(s)	778
BstAPI	GCANNNNNTGC	1 cut(s)	1060
BstC8I	GCNNGC	7 cut(s)	195, 447, 804, 1026, 1110, 1245, 1249
BstDEI	CTNAG	4 cut(s)	301, 411, 944, 1145
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	2 cut(s)	79, 993
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	2 cut(s)	131, 598
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 1051, 1060, 1109
BstNI	CCWGG	2 cut(s)	175, 644
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	173, 642
BstV1I	GCAGC	4 cut(s)	110, 461, 958, 1008
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	665, 770
BtgI	CCRYGG	1 cut(s)	626
BtrI	CACGTC	1 cut(s)	761
BtsCI	GGATG	2 cut(s)	79, 993
BtsI	GCAGTG	2 cut(s)	1083, 1110
BtsIMutI	CAGTG	2 cut(s)	1083, 1110
Cac8I	GCNNGC	7 cut(s)	195, 447, 804, 1026, 1110, 1245, 1249
Cfr13I	GGNCC	2 cut(s)	148, 171
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	3 cut(s)	54, 316, 1149
CspCI	CAANNNNNGTGG	4 cut(s)	408, 443, 1059, 1094
CviAII	CATG	5 cut(s)	168, 194, 273, 627, 1060
CviQI	GTAC	3 cut(s)	54, 316, 1149
DdeI	CTNAG	4 cut(s)	301, 411, 944, 1145
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	1032
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
EciI	GGCGGA	1 cut(s)	751
Eco130I	CCWWGG	2 cut(s)	626, 777
Eco24I	GRGCYC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	1195
Eco47I	GGWCC	2 cut(s)	148, 171
EcoRII	CCWGG	2 cut(s)	173, 642
EcoRV	GATATC	1 cut(s)	1195
EcoT14I	CCWWGG	2 cut(s)	626, 777
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	2 cut(s)	626, 777
FaeI	CATG	5 cut(s)	171, 197, 276, 630, 1063
FatI	CATG	5 cut(s)	167, 193, 272, 626, 1059
FblI	GTMKAC	3 cut(s)	247, 622, 835
Fnu4HI	GCNGC	4 cut(s)	99, 450, 972, 1022
FokI	GGATG	2 cut(s)	86, 1000
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	4 cut(s)	99, 450, 972, 1022
FspBI	CTAG	8 cut(s)	110, 114, 471, 618, 1097, 1185, 1248, 1252
GluI	GCNGC	4 cut(s)	99, 450, 972, 1022
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	665, 770
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	171, 197, 276, 630, 1063
HincII	GTYRAC	2 cut(s)	836, 1132
HindII	GTYRAC	2 cut(s)	836, 1132
HinfI	GANTC	3 cut(s)	85, 739, 832
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	3 cut(s)	515, 588, 884
Hpy166II	GTNNAC	6 cut(s)	248, 318, 527, 623, 836, 1132
Hpy188I	TCNGA	5 cut(s)	148, 222, 262, 831, 1018
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	6 cut(s)	248, 318, 527, 623, 836, 1132
HpyAV	CCTTC	2 cut(s)	388, 470
HpyCH4III	ACNGT	3 cut(s)	130, 142, 1231
HpyCH4IV	ACGT	2 cut(s)	760, 891
HpyCH4V	TGCA	9 cut(s)	98, 193, 272, 802, 1007, 1054, 1063, 1108, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 1051, 1060, 1109
HpyF3I	CTNAG	4 cut(s)	301, 411, 944, 1145
HpySE526I	ACGT	2 cut(s)	760, 891
Hsp92II	CATG	5 cut(s)	171, 197, 276, 630, 1063
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	388, 858
Lsp1109I	GCAGC	4 cut(s)	110, 461, 958, 1008
MaeI	CTAG	8 cut(s)	110, 114, 471, 618, 1097, 1185, 1248, 1252
MaeII	ACGT	2 cut(s)	760, 891
MaeIII	GTNAC	6 cut(s)	293, 344, 494, 872, 1066, 1088
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	455, 765, 816
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	748, 863
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	135
MseI	TTAA	4 cut(s)	306, 1031, 1154, 1167
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	175, 644
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	175, 644
MwoI	GCNNNNNNNGC	4 cut(s)	194, 1051, 1060, 1109
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	1 cut(s)	178
NheI	GCTAGC	1 cut(s)	1247
NlaIII	CATG	5 cut(s)	171, 197, 276, 630, 1063
NlaIV	GGNNCC	5 cut(s)	180, 417, 641, 860, 901
NmuCI	GTSAC	2 cut(s)	872, 1088
NspI	RCATGY	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	85, 739
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	4 cut(s)	100, 451, 973, 1023
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
Psp6I	CCWGG	2 cut(s)	173, 642
PspGI	CCWGG	2 cut(s)	173, 642
PspN4I	GGNNCC	5 cut(s)	180, 417, 641, 860, 901
PspPI	GGNCC	2 cut(s)	148, 171
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	55, 317, 1150
RsaNI	GTAC	3 cut(s)	54, 316, 1149
RseI	CAYNNNNRTG	1 cut(s)	473
SalI	GTCGAC	1 cut(s)	834
SaqAI	TTAA	4 cut(s)	306, 1031, 1154, 1167
SatI	GCNGC	4 cut(s)	99, 450, 972, 1022
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	148, 171
ScaI	AGTACT	1 cut(s)	1150
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	2 cut(s)	175, 644
SduI	GDGCHC	2 cut(s)	748, 863
SinI	GGWCC	2 cut(s)	148, 171
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	3 cut(s)	241, 747, 954
SmoI	CTYRAG	3 cut(s)	241, 747, 954
SphI	GCATGC	1 cut(s)	197
SsiI	CCGC	2 cut(s)	119, 736
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	8 cut(s)	110, 114, 471, 618, 1097, 1185, 1248, 1252
StyD4I	CCNGG	2 cut(s)	173, 642
StyI	CCWWGG	2 cut(s)	626, 777
TaaI	ACNGT	3 cut(s)	130, 142, 1231
TaiI	ACGT	2 cut(s)	763, 894
TaqI	TCGA	2 cut(s)	678, 835
TatI	WGTACW	1 cut(s)	1148
TfiI	GAWTC	2 cut(s)	85, 739
Tru1I	TTAA	4 cut(s)	306, 1031, 1154, 1167
Tru9I	TTAA	4 cut(s)	306, 1031, 1154, 1167
TscAI	CASTG	2 cut(s)	1083, 1110
TseFI	GTSAC	2 cut(s)	872, 1088
TseI	GCWGC	4 cut(s)	98, 449, 971, 1021
Tsp45I	GTSAC	2 cut(s)	872, 1088
TspDTI	ATGAA	4 cut(s)	156, 348, 955, 1004
TspRI	CASTG	2 cut(s)	1083, 1110
VpaK11BI	GGWCC	2 cut(s)	148, 171
XapI	RAATTY	2 cut(s)	66, 332
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	633
XmiI	GTMKAC	3 cut(s)	247, 622, 835
XspI	CTAG	8 cut(s)	110, 114, 471, 618, 1097, 1185, 1248, 1252
ZrmI	AGTACT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.