Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Reverse (-)

38321191 .. 38327294

Gene Structure 6104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGCGAGGGTGGGTATTGGTGTTTGATTTGTGGATTGTGGTGGTGATCGCATCTTTGGTGGTCGCCGCGTTGATTCTTCAGGTTGGCTTTCCTGGGATCACTTGGTTTCGATGGTGGATCGATCTTGCTCGGCAATGGATTTGCGTTACTGTGATGATGGCGGGGTATTATCGGACAGAGAGGGTGTCGATGTTGTGGCTGGCCTTGGCATCGGTGACGGAAGTGTTCCTGGGGACGGGGGTGGTTTTGGCTTTACTGGTGGCGGCGGCATTGCTGGGGCAGAGGTCTCTAGGGCTTCTCCAAGCTGGGCTGAAATTTGGGCCTTCCTTTGGTGACTCTCCGGTTTTAAACAGCGAGCAAAACAAGGCCTGGAAGATGGCTTTGGCGGAAGATGAATATACAAATGATGGCACTGTGGACATACATAAAAACCCTGCTAATAAGAGGAAGACTGGAAATTGGAAGGCATGCCGCTTTATTCTTGGAAATGAATGCTGTGAAAGATTGGCATACTATGGAATGAGTACCAATCTGGTGAACTATCTTCAGAAACAACTCAGCATGGGAAATGCCGCGGCATCAAAGAGTGTCACTAATTGGTCGGGAACTTGCTATGCCACACCACTGTTAGGAGCCTTCCTAGCTGATGCATACTTGGGAAGATATTCGACGATTGCCATTTTCTCGATTATATATGCTCTTGGGATGGCATTCTTGTCTCTGACAGCATCTATCAATGGACTAAAGCCATCATGCGACAGCTCTGGTTGCCACGCAACTGCATCACAAAAAGCAGTCTGCTTTGTAGCTCTGTACATGATTGCACTTGGTACTGGTGGAATCAAACCGTGCGTTTCATCTTTCGGTGCTGATCAATTTGATGAAACAGACGATACTGAGAAGGAAAAGAAGAGCTCTTTCTTCAATTGGTTTTACATGTCAATCAATGTTGGTGCACTTATTGCTTCCTCGGTTTTGGTCTATATACAAATGAATGTGGGATGGAACTGGGGTTTTGGGATCCCAGCAGTTGCAATGGTCATAGCAGTTGTGTTCTTTTTCTTTGGTAGCTCATTGTACCGACTTCAGAAACCCGGAGGGAGTCCCCTCACAAGGATTATTCAGGTCATTGTTGCATCCTGCAGGAAATTCAATGTAAAAGTCCCGGATGACAAGTCTCTTCTTTATGAAACAAGAGATGCTGAGAGTAATATCCAAGGAAGCCGCAAGCTTGAGCACACAGACAAGTTAAGGTTCTTTGATAAGGCTGCTGTGGAGGACCTGAAGAGCTTGGAAAACCCATGGAAAGTCTGCACAGTTACTCAAGTAGAGGAGCTCAAGGCCATCATCCGGTTGCTTCCAATATGGGCATCTGGGATAGTCTTTGCTGCAGTATACAGTCAAATGAGCACAATGTTTGTTTTGCAAGGCAACACAATGGATCAACATATGGGCCCCAAATTCAAGATTCCATCGGCATCTCTCTCCCTCTTTGACACAGTGAGTGTTCTCATCTGGGCTCCTATATATGACCTAGTCATTGTCCCATTTGCAAGAAAGTTCACTGGTCATCCAAGAGGTTTCACCCAGCTACAAAGAATGGGCATTGGCCTTCTCATATCCGTGTTTTCCATGGTTGTTGCTGGGATCTTGGAGGTTGTTCGGCTCGGGATTGTGCATAAAAACAATTATTATGACCGCGAATACATCCCCATGTCAATCTTTTGGCAAGTTCCACAGTACTTCCTTATTGGGTGTGCAGAGGTTTTCACATTCATTGGACAGTTAGAATTTTTCTATGACCAGGCACCTGATGCTATGAGAAGCTTGTGCTCTGCACTTTCACTTACAACTATTTCATTGGGAAATTACCTCAGCACTCTGCTTGTTACCATCGTAACTAAAGTTACCACAAGGAATGGGAAGCTTGGTTGGATTCCTGATAACTTGAACAGGGGCCATCTTGACTATTTTTACTGGCTATTGACCATTCTTAGCATCATTAACTTCCTTGTGTATCTCCTCATTGCTAAGTGGTATACATACAAGAAAACAGTGGATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

688

Amino Acids

76.75

Weight (kDa)

8.94

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	169 - 623	5.7e-13	Major Facilitator Superfamily
PTR2	PF00854	222 - 646	3.6e-125	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1807
AccI	GTMKAC	2 cut(s)	1395, 2039
AccII	CGCG	3 cut(s)	68, 575, 1701
AclWI	GGATC	6 cut(s)	104, 125, 1015, 1028, 1449, 1655
AcsI	RAATTY	4 cut(s)	314, 1148, 1460, 1790
AcuI	CTGAAG	4 cut(s)	62, 530, 1070, 1304
AfaI	GTAC	5 cut(s)	526, 815, 832, 1079, 1742
AfiI	CCNNNNNNNGG	5 cut(s)	235, 329, 629, 1113, 1350
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	4 cut(s)	925, 1153, 1465, 1951
AjnI	CCWGG	4 cut(s)	91, 228, 368, 1803
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
Alw21I	GWGCWC	6 cut(s)	917, 958, 1239, 1338, 1412, 1835
Alw26I	GTCTC	3 cut(s)	291, 723, 1182
Alw44I	GTGCAC	1 cut(s)	954
AlwI	GGATC	6 cut(s)	104, 125, 1015, 1028, 1449, 1655
Ama87I	CYCGRG	1 cut(s)	1667
AoxI	GGCC	7 cut(s)	201, 320, 366, 1341, 1453, 1609, 1957
ApaI	GGGCCC	1 cut(s)	1457
ApaLI	GTGCAC	1 cut(s)	954
ApeKI	GCWGC	2 cut(s)	1268, 1388
ApoI	RAATTY	4 cut(s)	314, 1148, 1460, 1790
Asp700I	GAANNNNTTC	1 cut(s)	664
AspS9I	GGNCC	5 cut(s)	320, 1279, 1453, 1454, 1957
AsuC2I	CCSGG	2 cut(s)	1095, 1166
AsuHPI	GGTGA	5 cut(s)	55, 226, 344, 547, 1576
AvaI	CYCGRG	1 cut(s)	1667
AvaII	GGWCC	1 cut(s)	1279
BaeGI	GKGCMC	2 cut(s)	958, 1457
BamHI	GGATCC	1 cut(s)	1020
BanI	GGYRCC	1 cut(s)	1807
BanII	GRGCYC	4 cut(s)	917, 1338, 1457, 1522
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	6 cut(s)	917, 958, 1239, 1338, 1412, 1835
BbvCI	CCTCAGC	1 cut(s)	1874
BbvI	GCAGC	2 cut(s)	1255, 1375
BciT130I	CCWGG	4 cut(s)	93, 230, 370, 1805
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	2 cut(s)	1095, 1166
BcoDI	GTCTC	3 cut(s)	291, 723, 1182
BfaI	CTAG	3 cut(s)	290, 641, 1535
BfmI	CTRYAG	2 cut(s)	1141, 1389
BisI	GCNGC	9 cut(s)	66, 264, 267, 472, 573, 576, 1225, 1269, 1389
BlsI	GCNGC	9 cut(s)	67, 265, 268, 473, 574, 577, 1226, 1270, 1390
BmcAI	AGTACT	1 cut(s)	1742
Bme1390I	CCNGG	6 cut(s)	93, 230, 370, 1095, 1166, 1805
Bme18I	GGWCC	1 cut(s)	1279
BmeT110I	CYCGRG	1 cut(s)	1667
BmgT120I	GGNCC	5 cut(s)	320, 1279, 1453, 1454, 1957
BmiI	GGNNCC	7 cut(s)	634, 1022, 1455, 1456, 1521, 1809, 1958
BmrFI	CCNGG	6 cut(s)	93, 230, 370, 1095, 1166, 1805
BmrI	ACTGGG	1 cut(s)	1018
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	1874
BpuEI	CTTGAG	3 cut(s)	1253, 1308, 1322
BpuMI	CCSGG	2 cut(s)	1095, 1166
Bsa29I	ATCGAT	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	8 cut(s)	92, 204, 229, 573, 969, 1216, 1301, 1632
BsaWI	WCCGGW	2 cut(s)	340, 1350
Bsc4I	CCNNNNNNNGG	5 cut(s)	235, 329, 629, 1113, 1350
Bse1I	ACTGG	6 cut(s)	261, 457, 838, 1013, 1570, 1982
Bse3DI	GCAATG	4 cut(s)	140, 269, 1041, 2025
BseBI	CCWGG	4 cut(s)	93, 230, 370, 1805
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	8 cut(s)	92, 204, 229, 573, 969, 1216, 1301, 1632
BseGI	GGATG	7 cut(s)	711, 1007, 1136, 1174, 1347, 1570, 1707
BseLI	CCNNNNNNNGG	5 cut(s)	235, 329, 629, 1113, 1350
BseMI	GCAATG	4 cut(s)	140, 269, 1041, 2025
BseMII	CTCAG	4 cut(s)	571, 888, 1194, 1888
BseNI	ACTGG	6 cut(s)	261, 457, 838, 1013, 1570, 1982
BseRI	GAGGAG	2 cut(s)	1346, 2012
BseSI	GKGCMC	2 cut(s)	958, 1457
BseXI	GCAGC	2 cut(s)	1255, 1375
BseYI	CCCAGC	5 cut(s)	274, 305, 1024, 1587, 1643
BsgI	GTGCAG	3 cut(s)	1297, 1779, 1821
Bsh1236I	CGCG	3 cut(s)	68, 575, 1701
BshFI	GGCC	7 cut(s)	203, 322, 368, 1343, 1455, 1611, 1959
BshNI	GGYRCC	1 cut(s)	1807
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	6 cut(s)	917, 958, 1239, 1338, 1412, 1835
BsiHKCI	CYCGRG	1 cut(s)	1667
BsiSI	CCGG	4 cut(s)	341, 1095, 1166, 1351
BslFI	GGGAC	4 cut(s)	247, 1089, 1148, 1529
BslI	CCNNNNNNNGG	5 cut(s)	235, 329, 629, 1113, 1350
BsmAI	GTCTC	3 cut(s)	291, 723, 1182
BsmFI	GGGAC	4 cut(s)	247, 1089, 1148, 1529
BsmI	GAATGC	2 cut(s)	497, 710
BsnI	GGCC	7 cut(s)	203, 322, 368, 1343, 1455, 1611, 1959
Bso31I	GGTCTC	1 cut(s)	291
BsoBI	CYCGRG	1 cut(s)	1667
Bsp120I	GGGCCC	1 cut(s)	1453
Bsp1286I	GDGCHC	8 cut(s)	917, 958, 1239, 1338, 1412, 1457, 1522, 1835
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
Bsp19I	CCATGG	2 cut(s)	1301, 1632
BspANI	GGCC	7 cut(s)	203, 322, 368, 1343, 1455, 1611, 1959
BspCNI	CTCAG	4 cut(s)	570, 889, 1195, 1887
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	3 cut(s)	68, 575, 1701
BspLI	GGNNCC	7 cut(s)	634, 1022, 1455, 1456, 1521, 1809, 1958
BspMAI	CTGCAG	2 cut(s)	1145, 1393
BspPI	GGATC	6 cut(s)	104, 125, 1015, 1028, 1449, 1655
BspQI	GCTCTTC	2 cut(s)	905, 1280
BspT107I	GGYRCC	1 cut(s)	1807
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	4 cut(s)	140, 269, 1041, 2025
BsrGI	TGTACA	1 cut(s)	813
BsrI	ACTGG	6 cut(s)	261, 457, 838, 1013, 1570, 1982
BssECI	CCNNGG	8 cut(s)	92, 204, 229, 573, 969, 1216, 1301, 1632
BssMI	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
BssNAI	GTATAC	2 cut(s)	1396, 2040
BssT1I	CCWWGG	4 cut(s)	204, 1216, 1301, 1632
Bst1107I	GTATAC	2 cut(s)	1396, 2040
Bst2UI	CCWGG	4 cut(s)	93, 230, 370, 1805
Bst6I	CTCTTC	3 cut(s)	905, 1185, 1280
BstAPI	GCANNNNNTGC	2 cut(s)	962, 1814
BstAUI	TGTACA	1 cut(s)	813
BstC8I	GCNNGC	4 cut(s)	201, 356, 469, 1229
BstDEI	CTNAG	6 cut(s)	557, 897, 1203, 1874, 1994, 2031
BstDSI	CCRYGG	3 cut(s)	573, 1301, 1632
BstF5I	GGATG	7 cut(s)	711, 1007, 1136, 1174, 1347, 1570, 1707
BstFNI	CGCG	3 cut(s)	68, 575, 1701
BstKTI	GATC	9 cut(s)	48, 99, 120, 124, 874, 1023, 1444, 1650, 2062
BstMAI	GTCTC	3 cut(s)	291, 723, 1182
BstMBI	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
BstMWI	GCNNNNNNNGC	4 cut(s)	641, 768, 962, 1814
BstNI	CCWGG	4 cut(s)	93, 230, 370, 1805
BstNSI	RCATGY	2 cut(s)	471, 940
BstSCI	CCNGG	6 cut(s)	91, 228, 368, 1093, 1164, 1803
BstSFI	CTRYAG	2 cut(s)	1141, 1389
BstSLI	GKGCMC	2 cut(s)	958, 1457
BstUI	CGCG	3 cut(s)	68, 575, 1701
BstV1I	GCAGC	2 cut(s)	1255, 1375
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	1020, 1647
BstYI	RGATCY	2 cut(s)	1020, 1647
BstZ17I	GTATAC	2 cut(s)	1396, 2040
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	7 cut(s)	203, 322, 368, 1343, 1455, 1611, 1959
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	3 cut(s)	573, 1301, 1632
BtsCI	GGATG	7 cut(s)	711, 1007, 1136, 1174, 1347, 1570, 1707
BtsIMutI	CAGTG	5 cut(s)	411, 623, 1506, 1563, 2061
Cac8I	GCNNGC	4 cut(s)	201, 356, 469, 1229
Cfr13I	GGNCC	5 cut(s)	320, 1279, 1453, 1454, 1957
Cfr42I	CCGCGG	1 cut(s)	576
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	5 cut(s)	525, 814, 831, 1078, 1741
CviAII	CATG	8 cut(s)	468, 562, 753, 817, 937, 1302, 1633, 1714
CviQI	GTAC	5 cut(s)	525, 814, 831, 1078, 1741
DdeI	CTNAG	6 cut(s)	557, 897, 1203, 1874, 1994, 2031
DpnI	GATC	9 cut(s)	47, 98, 119, 123, 873, 1022, 1443, 1649, 2061
DpnII	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
DraI	TTTAAA	1 cut(s)	348
Eam1104I	CTCTTC	3 cut(s)	905, 1185, 1280
EarI	CTCTTC	3 cut(s)	905, 1185, 1280
EciI	GGCGGA	1 cut(s)	401
Ecl136II	GAGCTC	2 cut(s)	915, 1336
Eco130I	CCWWGG	4 cut(s)	204, 1216, 1301, 1632
Eco147I	AGGCCT	1 cut(s)	368
Eco24I	GRGCYC	4 cut(s)	917, 1338, 1457, 1522
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	1279
Eco53kI	GAGCTC	2 cut(s)	915, 1336
Eco57I	CTGAAG	4 cut(s)	62, 530, 1070, 1304
Eco88I	CYCGRG	1 cut(s)	1667
EcoICRI	GAGCTC	2 cut(s)	915, 1336
EcoO109I	RGGNCCY	2 cut(s)	1279, 1454
EcoRII	CCWGG	4 cut(s)	91, 228, 368, 1803
EcoT14I	CCWWGG	4 cut(s)	204, 1216, 1301, 1632
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	4 cut(s)	917, 1338, 1457, 1522
ErhI	CCWWGG	4 cut(s)	204, 1216, 1301, 1632
FaeI	CATG	8 cut(s)	471, 565, 756, 820, 940, 1305, 1636, 1717
FaqI	GGGAC	4 cut(s)	247, 1089, 1148, 1529
FatI	CATG	8 cut(s)	467, 561, 752, 816, 936, 1301, 1632, 1713
FauI	CCCGC	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	1449
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	2 cut(s)	1395, 2039
Fnu4HI	GCNGC	9 cut(s)	66, 264, 267, 472, 573, 576, 1225, 1269, 1389
FokI	GGATG	7 cut(s)	718, 1014, 1123, 1181, 1334, 1557, 1694
FriOI	GRGCYC	4 cut(s)	917, 1338, 1457, 1522
Fsp4HI	GCNGC	9 cut(s)	66, 264, 267, 472, 573, 576, 1225, 1269, 1389
FspBI	CTAG	3 cut(s)	290, 641, 1535
GluI	GCNGC	9 cut(s)	66, 264, 267, 472, 573, 576, 1225, 1269, 1389
GsaI	CCCAGC	5 cut(s)	278, 309, 1028, 1591, 1647
HaeIII	GGCC	7 cut(s)	203, 322, 368, 1343, 1455, 1611, 1959
HapII	CCGG	4 cut(s)	341, 1095, 1166, 1351
Hin1II	CATG	8 cut(s)	471, 565, 756, 820, 940, 1305, 1636, 1717
HindIII	AAGCTT	3 cut(s)	1229, 1825, 1925
HinfI	GANTC	6 cut(s)	73, 335, 840, 1102, 1468, 1936
HpaII	CCGG	4 cut(s)	341, 1095, 1166, 1351
HphI	GGTGA	5 cut(s)	55, 226, 344, 547, 1576
Hpy166II	GTNNAC	6 cut(s)	418, 538, 956, 1396, 1563, 2040
Hpy188I	TCNGA	4 cut(s)	174, 549, 723, 1089
Hpy188III	TCNNGA	6 cut(s)	603, 685, 1465, 1669, 1940, 1964
Hpy8I	GTNNAC	6 cut(s)	418, 538, 956, 1396, 1563, 2040
Hpy99I	CGWCG	1 cut(s)	673
HpyAV	CCTTC	5 cut(s)	333, 457, 646, 895, 1622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	641, 768, 962, 1814
HpyF3I	CTNAG	6 cut(s)	557, 897, 1203, 1874, 1994, 2031
Hsp92II	CATG	8 cut(s)	471, 565, 756, 820, 940, 1305, 1636, 1717
Ksp22I	TGATCA	1 cut(s)	871
KspI	CCGCGG	1 cut(s)	576
Kzo9I	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
LguI	GCTCTTC	2 cut(s)	905, 1280
LmnI	GCTCC	3 cut(s)	632, 1333, 1525
Lsp1109I	GCAGC	2 cut(s)	1255, 1375
MaeI	CTAG	3 cut(s)	290, 641, 1535
MaeIII	GTNAC	8 cut(s)	145, 214, 332, 589, 1318, 1888, 1897, 1906
MalI	GATC	9 cut(s)	47, 98, 119, 123, 873, 1022, 1443, 1649, 2061
MboI	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
MfeI	CAATTG	1 cut(s)	925
MflI	RGATCY	2 cut(s)	1020, 1647
MhlI	GDGCHC	8 cut(s)	917, 958, 1239, 1338, 1412, 1457, 1522, 1835
MlyI	GAGTC	2 cut(s)	329, 1111
MmeI	TCCRAC	1 cut(s)	1913
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	664
MseI	TTAA	3 cut(s)	347, 1250, 2004
MslI	CAYNNNNRTG	2 cut(s)	1622, 1712
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	4 cut(s)	341, 1095, 1166, 1351
MspR9I	CCNGG	6 cut(s)	93, 230, 370, 1095, 1166, 1805
MunI	CAATTG	1 cut(s)	925
Mva1269I	GAATGC	2 cut(s)	497, 710
MvaI	CCWGG	4 cut(s)	93, 230, 370, 1805
MvnI	CGCG	3 cut(s)	68, 575, 1701
MwoI	GCNNNNNNNGC	4 cut(s)	641, 768, 962, 1814
NciI	CCSGG	2 cut(s)	1095, 1166
NcoI	CCATGG	2 cut(s)	1301, 1632
NdeI	CATATG	1 cut(s)	1449
NdeII	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
NlaIII	CATG	8 cut(s)	471, 565, 756, 820, 940, 1305, 1636, 1717
NlaIV	GGNNCC	7 cut(s)	634, 1022, 1455, 1456, 1521, 1809, 1958
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	3 cut(s)	214, 332, 589
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	2 cut(s)	471, 940
PaeI	GCATGC	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	368
PciI	ACATGT	1 cut(s)	936
PciSI	GCTCTTC	2 cut(s)	905, 1280
PctI	GAATGC	2 cut(s)	497, 710
PdmI	GAANNNNTTC	1 cut(s)	664
PfeI	GAWTC	4 cut(s)	73, 840, 1468, 1936
PflFI	GACNNNGTC	1 cut(s)	1535
PfoI	TCCNGGA	1 cut(s)	1164
PkrI	GCNGC	9 cut(s)	67, 265, 268, 473, 574, 577, 1226, 1270, 1390
PleI	GAGTC	2 cut(s)	329, 1110
PpsI	GAGTC	2 cut(s)	329, 1110
PpuMI	RGGWCCY	1 cut(s)	1279
PscI	ACATGT	1 cut(s)	936
Psp124BI	GAGCTC	2 cut(s)	917, 1338
Psp5II	RGGWCCY	1 cut(s)	1279
Psp6I	CCWGG	4 cut(s)	91, 228, 368, 1803
PspFI	CCCAGC	5 cut(s)	274, 305, 1024, 1587, 1643
PspGI	CCWGG	4 cut(s)	91, 228, 368, 1803
PspN4I	GGNNCC	7 cut(s)	634, 1022, 1455, 1456, 1521, 1809, 1958
PspOMI	GGGCCC	1 cut(s)	1453
PspPI	GGNCC	5 cut(s)	320, 1279, 1453, 1454, 1957
PspPPI	RGGWCCY	1 cut(s)	1279
PstI	CTGCAG	2 cut(s)	1145, 1393
PsuI	RGATCY	2 cut(s)	1020, 1647
PsyI	GACNNNGTC	1 cut(s)	1535
RsaI	GTAC	5 cut(s)	526, 815, 832, 1079, 1742
RsaNI	GTAC	5 cut(s)	525, 814, 831, 1078, 1741
RseI	CAYNNNNRTG	2 cut(s)	1622, 1712
SacI	GAGCTC	2 cut(s)	917, 1338
SacII	CCGCGG	1 cut(s)	576
SapI	GCTCTTC	2 cut(s)	905, 1280
SaqAI	TTAA	3 cut(s)	347, 1250, 2004
SatI	GCNGC	9 cut(s)	66, 264, 267, 472, 573, 576, 1225, 1269, 1389
Sau3AI	GATC	9 cut(s)	45, 96, 117, 121, 871, 1020, 1441, 1647, 2059
Sau96I	GGNCC	5 cut(s)	320, 1279, 1453, 1454, 1957
SbfI	CCTGCAGG	1 cut(s)	1145
ScaI	AGTACT	1 cut(s)	1742
SchI	GAGTC	2 cut(s)	329, 1111
ScrFI	CCNGG	6 cut(s)	93, 230, 370, 1095, 1166, 1805
SdaI	CCTGCAGG	1 cut(s)	1145
SduI	GDGCHC	8 cut(s)	917, 958, 1239, 1338, 1412, 1457, 1522, 1835
SfcI	CTRYAG	2 cut(s)	1141, 1389
Sfr303I	CCGCGG	1 cut(s)	576
SgrBI	CCGCGG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	1279
SmiMI	CAYNNNNRTG	2 cut(s)	1622, 1712
SmlI	CTYRAG	3 cut(s)	1232, 1323, 1337
SmoI	CTYRAG	3 cut(s)	1232, 1323, 1337
SphI	GCATGC	1 cut(s)	471
Sse8387I	CCTGCAGG	1 cut(s)	1145
SseBI	AGGCCT	1 cut(s)	368
SspMI	CTAG	3 cut(s)	290, 641, 1535
SstI	GAGCTC	2 cut(s)	917, 1338
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	6 cut(s)	91, 228, 368, 1093, 1164, 1803
StyI	CCWWGG	4 cut(s)	204, 1216, 1301, 1632
TaqI	TCGA	5 cut(s)	109, 120, 188, 668, 686
TatI	WGTACW	2 cut(s)	813, 1740
TauI	GCSGC	7 cut(s)	68, 266, 269, 474, 575, 578, 1227
TfiI	GAWTC	4 cut(s)	73, 840, 1468, 1936
Tru1I	TTAA	3 cut(s)	347, 1250, 2004
Tru9I	TTAA	3 cut(s)	347, 1250, 2004
TscAI	CASTG	5 cut(s)	418, 630, 1506, 1570, 2061
TseFI	GTSAC	3 cut(s)	214, 332, 589
TseI	GCWGC	2 cut(s)	1268, 1388
Tsp45I	GTSAC	3 cut(s)	214, 332, 589
TspDTI	ATGAA	8 cut(s)	408, 504, 846, 897, 1007, 1203, 1765, 1848
TspGWI	ACGGA	2 cut(s)	233, 1612
TspRI	CASTG	5 cut(s)	418, 630, 1506, 1570, 2061
Tth111I	GACNNNGTC	1 cut(s)	1535
VneI	GTGCAC	1 cut(s)	954
VpaK11BI	GGWCC	1 cut(s)	1279
XapI	RAATTY	4 cut(s)	314, 1148, 1460, 1790
XceI	RCATGY	2 cut(s)	471, 940
XmiI	GTMKAC	2 cut(s)	1395, 2039
XmnI	GAANNNNTTC	1 cut(s)	664
XspI	CTAG	3 cut(s)	290, 641, 1535
ZrmI	AGTACT	1 cut(s)	1742
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.