Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8449979.1

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1551

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8449979.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1334 bp

atgtcaacatcagtcccaggcctgaaacctacctgtgtttcgaaagatgactgctatgcaactgctggacaatctgcagcctgctttgtggcattgtacctaatagctttggcaactggtgggattaagccttgtgtctcagcttatggagcagatcagtttgacgaggatgatgagattgaaaagaagcacaagagttctttcttcaactggttctattttgtcatcaacatcggtgctttgattgctagttcattactggtatggatacaaaccaacaagggttgggaatggggtttcggcataccagcagttgccatggcaattgctgtagtgagtttcttttcgggtactaggatatacaggaaccagaacccaggaggtagcccgataacccgaatagttcaggtggtggtggcatctgtgagaaaatacaaggtggaagtacctgaagacaagtccgttttgtatgagaccgcagatgcagagtctgctatcaaaggaagccgcaagcttgaacacacaaatgagtttaggttttttgacaaagcagctgtggagctaccaacagacaacataaagggcttcacagacccgtggagactttgtacagttacccaagtagaggagctaaaatcaatcataaggttgcttcctgtttgggccactggtattatctttgctgcggtcttcagtcagatgagcaacttctttgtgttgcaaggcagccttatggatcttcatgttggctcctctagctttgagattccagcagcctccctctccgtatttgatacccttagtgttattgtttggatcccaatctttgatcgactcattgtcccatttactagaaaattcacaggtcacaagaatggcataacttcactccagaggatgggaattggtctcttcatttccatattctccatgatatgtgctgcaattctagaatatatcaggctccaaaaggttcgagagcacaactattatgaccttgaccatatgcccatgtctgttttttggcaagtgcctcagtatttcctaataggggctgcagaagtcttcacagtcattggacaggtcgactttttctacgatcaagcacctgatgccatgagaagcttgtcttctgctctcgcactctccactgttgcattaggaaactacttcaactctctgcttgtcaccattgtttccaacgtgacgacaaagaacaataagccgggatggataccagacaatttgaactacggtcacctcgattatttcttctattttctcgctgtgctgagtgttctgaacctcggagcttttatgttaatttccaagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

444

Amino Acids

49.43

Weight (kDa)

6.19

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	1086
AciI	CCGC	3 cut(s)	477, 508, 686
AclWI	GGATC	3 cut(s)	744, 811, 824
AcsI	RAATTY	1 cut(s)	857
AcuI	CTGAAG	2 cut(s)	471, 676
AfaI	GTAC	4 cut(s)	98, 352, 447, 610
AfiI	CCNNNNNNNGG	3 cut(s)	625, 898, 1051
AgsI	TTSAA	5 cut(s)	182, 208, 518, 1174, 1249
AhdI	GACNNNNNGTC	1 cut(s)	839
AjnI	CCWGG	2 cut(s)	16, 376
AluBI	AGCT	9 cut(s)	107, 143, 514, 554, 562, 631, 759, 1125, 1313
AluI	AGCT	9 cut(s)	107, 143, 514, 554, 562, 631, 759, 1125, 1313
Alw21I	GWGCWC	1 cut(s)	984
Alw26I	GTCTC	4 cut(s)	142, 467, 595, 914
AlwI	GGATC	3 cut(s)	744, 811, 824
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	2 cut(s)	19, 663
ApeKI	GCWGC	7 cut(s)	77, 551, 683, 726, 773, 941, 1055
ApoI	RAATTY	1 cut(s)	857
AspS9I	GGNCC	1 cut(s)	663
AsuC2I	CCSGG	1 cut(s)	1227
AsuHPI	GGTGA	2 cut(s)	1180, 1250
AsuII	TTCGAA	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	816
BbsI	GAAGAC	4 cut(s)	459, 682, 1057, 1122
Bbv12I	GWGCWC	1 cut(s)	984
BbvI	GCAGC	7 cut(s)	89, 563, 670, 738, 785, 928, 1042
BccI	CCATC	2 cut(s)	892, 1224
BciT130I	CCWGG	2 cut(s)	18, 378
BciVI	GTATCC	2 cut(s)	261, 1227
BcnI	CCSGG	1 cut(s)	1227
BcoDI	GTCTC	4 cut(s)	142, 467, 595, 914
BfaI	CTAG	5 cut(s)	249, 354, 756, 852, 950
BfmI	CTRYAG	3 cut(s)	75, 330, 1056
BfuI	GTATCC	2 cut(s)	261, 1227
BisI	GCNGC	8 cut(s)	78, 508, 552, 684, 727, 774, 942, 1056
BlsI	GCNGC	8 cut(s)	79, 509, 553, 685, 728, 775, 943, 1057
Bme1390I	CCNGG	3 cut(s)	18, 378, 1227
BmeRI	GACNNNNNGTC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	4 cut(s)	368, 751, 818, 965
BmrFI	CCNGG	3 cut(s)	18, 378, 1227
BmsI	GCATC	3 cut(s)	428, 472, 1102
BpiI	GAAGAC	4 cut(s)	459, 682, 1057, 1122
BpmI	CTGGAG	1 cut(s)	875
Bpu14I	TTCGAA	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	1227
BsaBI	GATNNNNATC	1 cut(s)	821
BsaI	GGTCTC	2 cut(s)	467, 914
BsaJI	CCNNGG	5 cut(s)	16, 318, 376, 596, 1306
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	3 cut(s)	625, 898, 1051
Bse1I	ACTGG	4 cut(s)	121, 215, 264, 673
Bse8I	GATNNNNATC	1 cut(s)	821
BseBI	CCWGG	2 cut(s)	18, 378
BseDI	CCNNGG	5 cut(s)	16, 318, 376, 596, 1306
BseGI	GGATG	3 cut(s)	175, 903, 1235
BseJI	GATNNNNATC	1 cut(s)	821
BseLI	CCNNNNNNNGG	3 cut(s)	625, 898, 1051
BseMII	CTCAG	3 cut(s)	153, 1049, 1283
BseNI	ACTGG	4 cut(s)	121, 215, 264, 673
BseRI	GAGGAG	2 cut(s)	641, 742
BseXI	GCAGC	7 cut(s)	89, 563, 670, 738, 785, 928, 1042
BshFI	GGCC	2 cut(s)	21, 665
BsiHKAI	GWGCWC	1 cut(s)	984
BsiSI	CCGG	1 cut(s)	1226
BslFI	GGGAC	1 cut(s)	827
BslI	CCNNNNNNNGG	3 cut(s)	625, 898, 1051
BsmAI	GTCTC	4 cut(s)	142, 467, 595, 914
BsmFI	GGGAC	1 cut(s)	827
BsnI	GGCC	2 cut(s)	21, 665
Bso31I	GGTCTC	2 cut(s)	467, 914
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	984
Bsp1407I	TGTACA	1 cut(s)	608
Bsp143I	GATC	5 cut(s)	154, 736, 816, 829, 1099
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	3 cut(s)	477, 508, 686
BspANI	GGCC	2 cut(s)	21, 665
BspCNI	CTCAG	3 cut(s)	152, 1048, 1284
BspLI	GGNNCC	4 cut(s)	368, 751, 818, 965
BspMAI	CTGCAG	2 cut(s)	79, 1060
BspPI	GGATC	3 cut(s)	744, 811, 824
BspT104I	TTCGAA	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	467, 914
BsrGI	TGTACA	1 cut(s)	608
BsrI	ACTGG	4 cut(s)	121, 215, 264, 673
BssECI	CCNNGG	5 cut(s)	16, 318, 376, 596, 1306
BssMI	GATC	5 cut(s)	154, 736, 816, 829, 1099
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	18, 378
Bst4CI	ACNGT	4 cut(s)	613, 1072, 1153, 1256
Bst6I	CTCTTC	1 cut(s)	917
BstAPI	GCANNNNNTGC	2 cut(s)	491, 1112
BstAUI	TGTACA	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	82, 512
BstDEI	CTNAG	4 cut(s)	139, 800, 1035, 1292
BstDSI	CCRYGG	2 cut(s)	318, 596
BstEII	GGTNACC	1 cut(s)	1256
BstF5I	GGATG	3 cut(s)	175, 903, 1235
BstKTI	GATC	5 cut(s)	157, 739, 819, 832, 1102
BstMAI	GTCTC	4 cut(s)	142, 467, 595, 914
BstMBI	GATC	5 cut(s)	154, 736, 816, 829, 1099
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 245, 491, 756, 1112
BstNI	CCWGG	2 cut(s)	18, 378
BstPI	GGTNACC	1 cut(s)	1256
BstSCI	CCNGG	3 cut(s)	16, 376, 1225
BstSFI	CTRYAG	3 cut(s)	75, 330, 1056
BstV1I	GCAGC	7 cut(s)	89, 563, 670, 738, 785, 928, 1042
BstV2I	GAAGAC	4 cut(s)	459, 682, 1057, 1122
BstX2I	RGATCY	2 cut(s)	736, 816
BstYI	RGATCY	2 cut(s)	736, 816
BsuI	GTATCC	2 cut(s)	261, 1227
BsuRI	GGCC	2 cut(s)	21, 665
BtgI	CCRYGG	2 cut(s)	318, 596
BtsCI	GGATG	3 cut(s)	175, 903, 1235
BtsIMutI	CAGTG	2 cut(s)	666, 1149
Cac8I	GCNNGC	2 cut(s)	82, 512
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	663
Csp6I	GTAC	4 cut(s)	97, 351, 446, 609
CviAII	CATG	5 cut(s)	319, 743, 931, 1012, 1117
CviQI	GTAC	4 cut(s)	97, 351, 446, 609
DdeI	CTNAG	4 cut(s)	139, 800, 1035, 1292
DpnI	GATC	5 cut(s)	156, 738, 818, 831, 1101
DpnII	GATC	5 cut(s)	154, 736, 816, 829, 1099
DriI	GACNNNNNGTC	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	917
Eam1105I	GACNNNNNGTC	1 cut(s)	839
EarI	CTCTTC	1 cut(s)	917
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	21
Eco31I	GGTCTC	2 cut(s)	467, 914
Eco57I	CTGAAG	2 cut(s)	471, 676
Eco91I	GGTNACC	1 cut(s)	1256
EcoO65I	GGTNACC	1 cut(s)	1256
EcoRII	CCWGG	2 cut(s)	16, 376
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	5 cut(s)	322, 746, 934, 1015, 1120
FalI	AAGNNNNNCTT	4 cut(s)	714, 746, 1114, 1146
FaqI	GGGAC	1 cut(s)	827
FatI	CATG	5 cut(s)	318, 742, 930, 1011, 1116
FauNDI	CATATG	1 cut(s)	1005
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	8 cut(s)	78, 508, 552, 684, 727, 774, 942, 1056
FokI	GGATG	3 cut(s)	182, 910, 1242
Fsp4HI	GCNGC	8 cut(s)	78, 508, 552, 684, 727, 774, 942, 1056
FspBI	CTAG	5 cut(s)	249, 354, 756, 852, 950
GluI	GCNGC	8 cut(s)	78, 508, 552, 684, 727, 774, 942, 1056
GsuI	CTGGAG	1 cut(s)	875
HaeIII	GGCC	2 cut(s)	21, 665
HapII	CCGG	1 cut(s)	1226
Hin1II	CATG	5 cut(s)	322, 746, 934, 1015, 1120
HincII	GTYRAC	2 cut(s)	6, 1087
HindII	GTYRAC	2 cut(s)	6, 1087
HindIII	AAGCTT	2 cut(s)	512, 1123
HinfI	GANTC	3 cut(s)	488, 766, 834
HpaII	CCGG	1 cut(s)	1226
HphI	GGTGA	2 cut(s)	1180, 1250
Hpy166II	GTNNAC	2 cut(s)	6, 1087
Hpy188I	TCNGA	3 cut(s)	699, 1302, 1310
Hpy188III	TCNNGA	3 cut(s)	892, 950, 977
Hpy8I	GTNNAC	2 cut(s)	6, 1087
HpyCH4III	ACNGT	4 cut(s)	613, 1072, 1153, 1256
HpyCH4IV	ACGT	1 cut(s)	1203
HpyCH4V	TGCA	7 cut(s)	59, 77, 485, 721, 944, 1058, 1157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 245, 491, 756, 1112
HpyF3I	CTNAG	4 cut(s)	139, 800, 1035, 1292
HpySE526I	ACGT	1 cut(s)	1203
Hsp92II	CATG	5 cut(s)	322, 746, 934, 1015, 1120
Kzo9I	GATC	5 cut(s)	154, 736, 816, 829, 1099
LmnI	GCTCC	6 cut(s)	149, 559, 628, 755, 969, 1310
Lsp1109I	GCAGC	7 cut(s)	89, 563, 670, 738, 785, 928, 1042
LweI	GCATC	3 cut(s)	428, 472, 1102
MaeI	CTAG	5 cut(s)	249, 354, 756, 852, 950
MaeII	ACGT	1 cut(s)	1203
MaeIII	GTNAC	5 cut(s)	613, 866, 1186, 1204, 1256
MalI	GATC	5 cut(s)	156, 738, 818, 831, 1101
MboI	GATC	5 cut(s)	154, 736, 816, 829, 1099
MboII	GAAGA	8 cut(s)	196, 464, 682, 731, 904, 1057, 1122, 1264
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	736, 816
MhlI	GDGCHC	1 cut(s)	984
MluCI	AATT	6 cut(s)	324, 857, 903, 945, 1243, 1323
MlyI	GAGTC	2 cut(s)	497, 828
MmeI	TCCRAC	1 cut(s)	1224
MseI	TTAA	2 cut(s)	126, 1322
MslI	CAYNNNNRTG	2 cut(s)	525, 873
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	1226
MspR9I	CCNGG	3 cut(s)	18, 378, 1227
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	2 cut(s)	18, 378
MwoI	GCNNNNNNNGC	5 cut(s)	149, 245, 491, 756, 1112
NciI	CCSGG	1 cut(s)	1227
NcoI	CCATGG	1 cut(s)	318
NdeI	CATATG	1 cut(s)	1005
NdeII	GATC	5 cut(s)	154, 736, 816, 829, 1099
NlaIII	CATG	5 cut(s)	322, 746, 934, 1015, 1120
NlaIV	GGNNCC	4 cut(s)	368, 751, 818, 965
NmuCI	GTSAC	4 cut(s)	866, 1186, 1204, 1256
NspV	TTCGAA	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	1260
PfeI	GAWTC	1 cut(s)	766
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	8 cut(s)	79, 509, 553, 685, 728, 775, 943, 1057
PleI	GAGTC	2 cut(s)	496, 828
PpsI	GAGTC	2 cut(s)	496, 828
Psp6I	CCWGG	2 cut(s)	16, 376
PspEI	GGTNACC	1 cut(s)	1256
PspGI	CCWGG	2 cut(s)	16, 376
PspN4I	GGNNCC	4 cut(s)	368, 751, 818, 965
PspPI	GGNCC	1 cut(s)	663
PstI	CTGCAG	2 cut(s)	79, 1060
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	736, 816
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	4 cut(s)	98, 352, 447, 610
RsaNI	GTAC	4 cut(s)	97, 351, 446, 609
RseI	CAYNNNNRTG	2 cut(s)	525, 873
SalI	GTCGAC	1 cut(s)	1085
SaqAI	TTAA	2 cut(s)	126, 1322
SatI	GCNGC	8 cut(s)	78, 508, 552, 684, 727, 774, 942, 1056
Sau3AI	GATC	5 cut(s)	154, 736, 816, 829, 1099
Sau96I	GGNCC	1 cut(s)	663
SchI	GAGTC	2 cut(s)	497, 828
ScrFI	CCNGG	3 cut(s)	18, 378, 1227
SduI	GDGCHC	1 cut(s)	984
SfaNI	GCATC	3 cut(s)	428, 472, 1102
SfcI	CTRYAG	3 cut(s)	75, 330, 1056
SfuI	TTCGAA	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	525, 873
Sse9I	AATT	6 cut(s)	324, 857, 903, 945, 1243, 1323
SseBI	AGGCCT	1 cut(s)	21
SsiI	CCGC	3 cut(s)	477, 508, 686
SspMI	CTAG	5 cut(s)	249, 354, 756, 852, 950
StuI	AGGCCT	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	16, 376, 1225
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	4 cut(s)	613, 1072, 1153, 1256
TaiI	ACGT	1 cut(s)	1206
TaqI	TCGA	5 cut(s)	41, 832, 976, 1086, 1263
TasI	AATT	6 cut(s)	324, 857, 903, 945, 1243, 1323
TatI	WGTACW	1 cut(s)	608
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	766
Tru1I	TTAA	2 cut(s)	126, 1322
Tru9I	TTAA	2 cut(s)	126, 1322
TscAI	CASTG	2 cut(s)	673, 1156
TseFI	GTSAC	4 cut(s)	866, 1186, 1204, 1256
TseI	GCWGC	7 cut(s)	77, 551, 683, 726, 773, 941, 1055
Tsp45I	GTSAC	4 cut(s)	866, 1186, 1204, 1256
TspDTI	ATGAA	3 cut(s)	243, 731, 904
TspGWI	ACGGA	2 cut(s)	451, 775
TspRI	CASTG	2 cut(s)	673, 1156
Van91I	CCANNNNNTGG	1 cut(s)	898
XapI	RAATTY	1 cut(s)	857
XbaI	TCTAGA	1 cut(s)	949
XmiI	GTMKAC	1 cut(s)	1086
XspI	CTAG	5 cut(s)	249, 354, 756, 852, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.