Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000603

Physical Location & Seq

Genomic Coordinates Reverse (-)

17590526 .. 17592154

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAACCAAAGTTCTTTGACAAGGCAGCTGTGGAGTCAGAGACAAACCGTGCCAAGGAATTGCGAAGCCCATGGAGCCTCTGCACACTGGGCATCCGGTATAGTTTTCGCCACCGTCTACGGCCAAATGAGCACAATGTTTGTCCTCCAAGGCAACACCCTAGACCAGCACATGGGCCCAAACTTCAAAATCCCATCAGCCTCCCTCTCCCTCTTCGACACTGTCAGCGTCATCTTCTGGGCTCCGATATACGACAGGCTTATCGTCCCCCTCGCCAGGCACTTCACGGGCCACGAACGAGGCTTCACGACGCTTCAACGGATGGGAATCGGCCTAGCACTCTCCATATTCTCCATGGTTGTTGCTGAGGTTTTGGAGGTCGTTAGGCTTGCCACTGTAAAAAAATATAATTACTACGACCTAGAGTACATTCCCATGTCGATTTTCTGGCAGGTCCCGCAGTATTTCATCATTGGGTGTGCTGAGGTTTTCACCTTCATCGGGCAGATGGAGTTTTTTTACGACCAGGCGCCTGACGCCATGAGAAGCTTGTGCTCTGCACTGTCACTGACCACTGTTGCACTGGGGAATTACCTCAGCACTCTGCTAGTTACTGTGGTAACTAAAGTTACCACGAAGAATGGGAATCTTGGGTGGATTCCGGATAACCTTAACAGGGGACACCTGGACTATTTTTATTGGCTGTTGGCTATTCTGAGCGTTATTAATTTCTTGGTGTACCTCTGGATTGCTAAGTGGTACACTTACAAGAAGGTGACTGGCTGTGCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

265

Amino Acids

29.99

Weight (kDa)

8.61

Isoelectric Point (pI)

21.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54140 AT3G54140 AT5G01180 AT5G01180 AT5G01180
fragaria_vesca	FvH4_3g38120 FvH4_6g11961 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_6g11970 FvH4_7g07580 FvH4_7g07580
malus_domestica	MD03G1076900.v1.1 MD04G1147500.v1.1 MD11G1081100.v1.1 MD11G1081200.v1.1 MD12G1160700.v1.1 MD12G1160900.v1.1
prunus_persica	Prupe.6G061500_v2.0.a1 Prupe.6G271100_v2.0.a1 Prupe.6G271200_v2.0.a1
pyrus_communis	pycom03g06080 pycom11g06920 pycom11g06940 pycom12g15250 pycom12g15270
rosa_chinensis	RchiOBHm_Chr1g0343091 RchiOBHm_Chr3g0463781 RchiOBHm_Chr3g0463791 RchiOBHm_Chr5g0068471 RchiOBHm_Chr5g0068501
rosa_laevigata	RLG00000024756 RLG00000024757 RLG00000029203 RLG00000035978 RLG00000035979
rosa_multiflora	Rmu_co8449979.1_g000001 Rmu_sc0000313.1_g000001 Rmu_sc0003221.1_g000016 Rmu_sc0003221.1_g000025 Rmu_sc0003221.1_g000026 Rmu_sc0004796.1_g000013 Rmu_sc0005087.1_g000011 Rmu_sc0008896.1_g000017 Rmu_sc0010201.1_g000001 Rmu_sc0017585.1_g000005
rosa_roxburghii	Rroxscaffold_1G00012300 Rroxscaffold_1G00012310 Rroxscaffold_1G00013040 Rroxscaffold_1G00013050 Rroxscaffold_4G00313320 Rroxscaffold_6G00416290 Rroxscaffold_6G00416300
rosa_rugosa	Rorug01G0144300.1 Rorug03G0067500 Rorug03G0067600 Rorug03G0067700 Rorug05G0390200 Rorug05G0390300 Rorug05G0390400.1 Rorug05G0390500 Rorug05G0390600 Rorug05G0390700
rosa_samantha	Rh1BG127900 Rh1CG150400 Rh1DG164100 Rh3AG124700 Rh3AG124800 Rh3CG131600 Rh3DG130100 Rh3DG130200 Rh5CG488500 Rh5DG480400 Rh5DG480600
rosa_wichuraiana	Rw1G013410 Rw3G010540 Rw3G010550 Rw5G041900 Rw5G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	121
AcyI	GRCGYC	2 cut(s)	530, 537
AfaI	GTAC	3 cut(s)	428, 740, 761
AfiI	CCNNNNNNNGG	5 cut(s)	54, 172, 276, 501, 676
AgsI	TTSAA	2 cut(s)	187, 317
AjnI	CCWGG	3 cut(s)	275, 525, 684
AluBI	AGCT	2 cut(s)	28, 549
AluI	AGCT	2 cut(s)	28, 549
Alw21I	GWGCWC	3 cut(s)	134, 557, 790
Alw26I	GTCTC	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	4 cut(s)	121, 175, 289, 331
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	25
AseI	ATTAAT	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	175, 176, 289, 454
AsuHPI	GGTGA	2 cut(s)	484, 787
AvaII	GGWCC	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	179, 244
Bbv12I	GWGCWC	3 cut(s)	134, 557, 790
BbvCI	CCTCAGC	3 cut(s)	366, 483, 596
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	3 cut(s)	202, 316, 502
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	3 cut(s)	277, 527, 686
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	4 cut(s)	161, 335, 422, 608
BfoI	RGCGCY	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	3 cut(s)	277, 527, 686
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	4 cut(s)	175, 176, 289, 454
BmiI	GGNNCC	5 cut(s)	76, 177, 243, 456, 531
BmrFI	CCNGG	3 cut(s)	277, 527, 686
BmrI	ACTGGG	2 cut(s)	97, 593
BmsI	GCATC	1 cut(s)	101
BmuI	ACTGGG	2 cut(s)	97, 593
Bpu10I	CCTNAGC	3 cut(s)	366, 483, 596
BsaBI	GATNNNNATC	1 cut(s)	326
BsaHI	GRCGYC	2 cut(s)	530, 537
BsaJI	CCNNGG	4 cut(s)	53, 70, 148, 354
BsaWI	WCCGGW	2 cut(s)	95, 661
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 172, 276, 501, 676
Bse1I	ACTGG	3 cut(s)	92, 588, 784
Bse8I	GATNNNNATC	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	3 cut(s)	277, 527, 686
BseDI	CCNNGG	4 cut(s)	53, 70, 148, 354
BseGI	GGATG	2 cut(s)	92, 327
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	5 cut(s)	54, 172, 276, 501, 676
BseMII	CTCAG	4 cut(s)	357, 474, 610, 707
BseNI	ACTGG	3 cut(s)	92, 588, 784
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	2 cut(s)	66, 543
BshFI	GGCC	4 cut(s)	123, 177, 291, 333
BshNI	GGYRCC	1 cut(s)	529
BsiHKAI	GWGCWC	3 cut(s)	134, 557, 790
BsiSI	CCGG	2 cut(s)	96, 662
BslFI	GGGAC	3 cut(s)	251, 440, 693
BslI	CCNNNNNNNGG	5 cut(s)	54, 172, 276, 501, 676
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	3 cut(s)	251, 440, 693
BsnI	GGCC	4 cut(s)	123, 177, 291, 333
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	5 cut(s)	134, 179, 244, 557, 790
Bsp13I	TCCGGA	1 cut(s)	661
Bsp19I	CCATGG	2 cut(s)	70, 354
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	4 cut(s)	123, 177, 291, 333
BspCNI	CTCAG	4 cut(s)	358, 475, 609, 708
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	5 cut(s)	76, 177, 243, 456, 531
BspMI	ACCTGC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	92, 588, 784
BssECI	CCNNGG	4 cut(s)	53, 70, 148, 354
BssNI	GRCGYC	2 cut(s)	530, 537
BssT1I	CCWWGG	4 cut(s)	53, 70, 148, 354
Bst2UI	CCWGG	3 cut(s)	277, 527, 686
Bst4CI	ACNGT	7 cut(s)	49, 115, 223, 397, 564, 577, 616
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	2 cut(s)	530, 537
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	5 cut(s)	366, 483, 596, 716, 753
BstDSI	CCRYGG	2 cut(s)	70, 354
BstF5I	GGATG	2 cut(s)	92, 327
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 89, 129, 457, 536
BstNI	CCWGG	3 cut(s)	277, 527, 686
BstSCI	CCNGG	3 cut(s)	275, 525, 684
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	4 cut(s)	123, 177, 291, 333
BtgI	CCRYGG	2 cut(s)	70, 354
BtsCI	GGATG	2 cut(s)	92, 327
BtsIMutI	CAGTG	7 cut(s)	85, 219, 393, 560, 566, 573, 581
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	4 cut(s)	175, 176, 289, 454
CseI	GACGC	3 cut(s)	217, 319, 545
Csp6I	GTAC	3 cut(s)	427, 739, 760
CviAII	CATG	5 cut(s)	71, 172, 355, 436, 541
CviQI	GTAC	3 cut(s)	427, 739, 760
DdeI	CTNAG	5 cut(s)	366, 483, 596, 716, 753
DinI	GGCGCC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	4 cut(s)	53, 70, 148, 354
Eco24I	GRGCYC	2 cut(s)	179, 244
Eco47I	GGWCC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	275, 525, 684
EcoT14I	CCWWGG	4 cut(s)	53, 70, 148, 354
EcoT38I	GRGCYC	2 cut(s)	179, 244
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
ErhI	CCWWGG	4 cut(s)	53, 70, 148, 354
FaeI	CATG	5 cut(s)	74, 175, 358, 439, 544
FaiI	YATR	9 cut(s)	72, 101, 173, 250, 347, 356, 408, 437, 542
FaqI	GGGAC	3 cut(s)	251, 440, 693
FatI	CATG	5 cut(s)	70, 171, 354, 435, 540
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	2 cut(s)	79, 334
FriOI	GRGCYC	2 cut(s)	179, 244
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	4 cut(s)	161, 335, 422, 608
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	4 cut(s)	123, 177, 291, 333
HapII	CCGG	2 cut(s)	96, 662
HgaI	GACGC	3 cut(s)	217, 319, 545
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	2 cut(s)	530, 537
Hin1II	CATG	5 cut(s)	74, 175, 358, 439, 544
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	4 cut(s)	34, 327, 646, 658
HpaII	CCGG	2 cut(s)	96, 662
HphI	GGTGA	2 cut(s)	484, 787
Hpy166II	GTNNAC	3 cut(s)	118, 739, 762
Hpy188I	TCNGA	3 cut(s)	39, 246, 717
Hpy188III	TCNNGA	3 cut(s)	307, 662, 745
Hpy8I	GTNNAC	3 cut(s)	118, 739, 762
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	505, 766
HpyCH4III	ACNGT	7 cut(s)	49, 115, 223, 397, 564, 577, 616
HpyCH4V	TGCA	3 cut(s)	83, 560, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 89, 129, 457, 536
HpyF3I	CTNAG	5 cut(s)	366, 483, 596, 716, 753
Hsp92I	GRCGYC	2 cut(s)	530, 537
Hsp92II	CATG	5 cut(s)	74, 175, 358, 439, 544
HspAI	GCGC	1 cut(s)	530
KasI	GGCGCC	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	661
LmnI	GCTCC	2 cut(s)	74, 247
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	4 cut(s)	161, 335, 422, 608
MaeIII	GTNAC	5 cut(s)	564, 610, 619, 628, 775
MboII	GAAGA	3 cut(s)	205, 226, 649
MhlI	GDGCHC	5 cut(s)	134, 179, 244, 557, 790
MluCI	AATT	4 cut(s)	58, 409, 589, 727
Mly113I	GGCGCC	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	43
MroI	TCCGGA	1 cut(s)	661
MseI	TTAA	2 cut(s)	672, 726
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	2 cut(s)	96, 662
MspR9I	CCNGG	3 cut(s)	277, 527, 686
MvaI	CCWGG	3 cut(s)	277, 527, 686
MwoI	GCNNNNNNNGC	5 cut(s)	74, 89, 129, 457, 536
NarI	GGCGCC	1 cut(s)	530
NcoI	CCATGG	2 cut(s)	70, 354
NlaIII	CATG	5 cut(s)	74, 175, 358, 439, 544
NlaIV	GGNNCC	5 cut(s)	76, 177, 243, 456, 531
NmuCI	GTSAC	2 cut(s)	564, 775
PfeI	GAWTC	3 cut(s)	327, 646, 658
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	454
PshBI	ATTAAT	1 cut(s)	726
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	3 cut(s)	275, 525, 684
PspGI	CCWGG	3 cut(s)	275, 525, 684
PspN4I	GGNNCC	5 cut(s)	76, 177, 243, 456, 531
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	4 cut(s)	175, 176, 289, 454
PspPPI	RGGWCCY	1 cut(s)	454
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	3 cut(s)	428, 740, 761
RsaNI	GTAC	3 cut(s)	427, 739, 760
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	672, 726
SatI	GCNGC	1 cut(s)	26
Sau96I	GGNCC	4 cut(s)	175, 176, 289, 454
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	277, 527, 686
SduI	GDGCHC	5 cut(s)	134, 179, 244, 557, 790
SfaNI	GCATC	1 cut(s)	101
SfoI	GGCGCC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	4 cut(s)	58, 409, 589, 727
SsiI	CCGC	1 cut(s)	458
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	4 cut(s)	161, 335, 422, 608
StyD4I	CCNGG	3 cut(s)	275, 525, 684
StyI	CCWWGG	4 cut(s)	53, 70, 148, 354
TaaI	ACNGT	7 cut(s)	49, 115, 223, 397, 564, 577, 616
TaqI	TCGA	2 cut(s)	216, 440
TasI	AATT	4 cut(s)	58, 409, 589, 727
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	3 cut(s)	327, 646, 658
Tru1I	TTAA	2 cut(s)	672, 726
Tru9I	TTAA	2 cut(s)	672, 726
TscAI	CASTG	7 cut(s)	92, 226, 400, 567, 573, 580, 588
TseFI	GTSAC	2 cut(s)	564, 775
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	2 cut(s)	564, 775
TspDTI	ATGAA	3 cut(s)	17, 457, 487
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	7 cut(s)	92, 226, 400, 567, 573, 580, 588
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	2 cut(s)	352, 580
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	4 cut(s)	161, 335, 422, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.