Rh5BG467100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008787
Physical Location & Seq
Reverse (-)
74448282 .. 74481354
33073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG467100.1

Sequence Viewer

Length: 1056 bp
ATGGAGTACTTTGTGAGCTTGTTTGAATTCAAGGCTCTGTCCCTTCGATTTGCAGACTCGGAGTTCGAACTGCAGACGTGGTCAGACCGTTATATTGGTCTAGATGATCAACCTGTAGACAATGGGACTAGTGCAGTGAAATTATTGAATGCCCAGAAGTTCTTGAAGAAAATAGGATGCGGTAAAGAGGACTACCACTGGAAACAAATCGGCAAGGCTTTACTGTGCACGTACACGCTGGGTGGAGTAGCTTGGCTCCACAATGAGAAATCGCCGCTCGGATGGTGGACGCTGAAGCCTTGTCCCATGGAGGAGAGAGTGCTAGCTCACTTGTATAAGCGGCAAGAATTTCCATACCAGGGAGACGAAGAAGCAATGGAAGAGTTTGTGGCAAAGGGTGCTTCAGGATCGACTGATCCTGGTGCTTCTCCAGTTCGTTCCATCCGTACACTGCCCGACGCTTCTCGACTTCCTCCTCCGACAGCCCCGAGTCGCTTCTCATTTTTTGGCTGCCCAGAGATCCAGCTCGTCCAACTCCCAGCAGCACGTGGTAAAGCTGACCTGAACTCATACCGGAATGCCAGTTCAGAGGTGGTTTCCAATTTATCAAGGAAGGGTCGATGTGAGAGGGCGTCAATTGACGAAGTGTATCTTGACCATACTGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGCTTGGAAGCAATTGAGGAGGAAGCTCTCAAGTCACATGTTTTGGGACTCGATAATGAGGTTGGGTTACAGGCAGTGAAATTATTGAATGCCCAGAAGTTCTTGAAGAAAATAGGATGCGGTAAAGAGGACTACCACTGGAAACAAATCGGCAAGGCTTTACTGTGCACGTACACGCTGGGTGGAGTAGCTTGGCTCCACAATGAGAAATCGCCGCTCGGATGGTGGACGCTGAAGCCTTGTCCCATGGAGGAGAGAGTGCTAGCTCACTTGTATAAGCGGCAAGAATTTCCATACCAGGGAGACGAAGAAGCAATGGAAGAGTTTGTGGCAAAGGGTGGTATGATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

39.45

Weight (kDa)

5.53

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 146 - 238 4e-06 impB/mucB/samB family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 277, 919
AccI GTMKAC 1 cut(s) 117
AciI CCGC 6 cut(s) 180, 275, 340, 822, 917, 982
AclWI GGATC 3 cut(s) 410, 415, 514
AcsI RAATTY 3 cut(s) 26, 347, 989
AcuI CTGAAG 4 cut(s) 314, 387, 708, 956
AcvI CACGTG 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 632
AfaI GTAC 4 cut(s) 8, 233, 448, 875
AfiI CCNNNNNNNGG 2 cut(s) 359, 1001
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 6 cut(s) 26, 31, 148, 166, 790, 808
AhlI ACTAGT 1 cut(s) 128
AjiI CACGTC 1 cut(s) 78
AjnI CCWGG 3 cut(s) 357, 418, 999
AloI GAACNNNNNNTCC 2 cut(s) 568, 600
Alw21I GWGCWC 2 cut(s) 230, 872
Alw26I GTCTC 2 cut(s) 357, 999
Alw44I GTGCAC 2 cut(s) 226, 868
AlwI GGATC 3 cut(s) 410, 415, 514
Ama87I CYCGRG 1 cut(s) 487
ApaLI GTGCAC 2 cut(s) 226, 868
ApeKI GCWGC 3 cut(s) 510, 542, 668
ApoI RAATTY 3 cut(s) 26, 347, 989
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AsuII TTCGAA 1 cut(s) 66
AsuNHI GCTAGC 2 cut(s) 322, 964
AvaI CYCGRG 1 cut(s) 487
BaeGI GKGCMC 2 cut(s) 230, 872
BbrPI CACGTG 1 cut(s) 548
Bbv12I GWGCWC 2 cut(s) 230, 872
BbvI GCAGC 3 cut(s) 497, 554, 680
BccI CCATC 3 cut(s) 276, 449, 918
BciT130I CCWGG 3 cut(s) 359, 420, 1001
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 357, 999
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 4 cut(s) 101, 129, 323, 965
BfmI CTRYAG 2 cut(s) 71, 114
BisI GCNGC 7 cut(s) 275, 341, 511, 543, 669, 917, 983
BlsI GCNGC 7 cut(s) 276, 342, 512, 544, 670, 918, 984
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 3 cut(s) 359, 420, 1001
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 257, 899
BmrFI CCNGG 3 cut(s) 359, 420, 1001
BmsI GCATC 3 cut(s) 167, 655, 809
BmtI GCTAGC 2 cut(s) 326, 968
BpmI CTGGAG 2 cut(s) 414, 681
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 716
BsaAI YACGTR 3 cut(s) 231, 548, 873
BsaHI GRCGYC 1 cut(s) 632
BsaJI CCNNGG 4 cut(s) 306, 358, 948, 1000
BsaWI WCCGGW 1 cut(s) 573
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 1001
Bse1I ACTGG 4 cut(s) 203, 431, 582, 845
Bse3DI GCAATG 2 cut(s) 381, 1023
BseBI CCWGG 3 cut(s) 359, 420, 1001
BseDI CCNNGG 4 cut(s) 306, 358, 948, 1000
BseGI GGATG 5 cut(s) 182, 287, 441, 824, 929
BseLI CCNNNNNNNGG 2 cut(s) 359, 1001
BseMI GCAATG 2 cut(s) 381, 1023
BseNI ACTGG 4 cut(s) 203, 431, 582, 845
BseRI GAGGAG 5 cut(s) 326, 465, 684, 734, 968
BseSI GKGCMC 2 cut(s) 230, 872
BseXI GCAGC 3 cut(s) 497, 554, 680
BseYI CCCAGC 3 cut(s) 238, 538, 880
BsgI GTGCAG 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 230, 872
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 1 cut(s) 574
BslFI GGGAC 5 cut(s) 25, 139, 288, 762, 930
BslI CCNNNNNNNGG 2 cut(s) 359, 1001
BsmAI GTCTC 2 cut(s) 357, 999
BsmBI CGTCTC 2 cut(s) 357, 999
BsmFI GGGAC 5 cut(s) 25, 139, 288, 762, 930
BsmI GAATGC 3 cut(s) 154, 583, 796
BsoBI CYCGRG 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 230, 872
Bsp143I GATC 4 cut(s) 106, 407, 415, 519
Bsp19I CCATGG 2 cut(s) 306, 948
BspACI CCGC 6 cut(s) 180, 275, 340, 822, 917, 982
BspLI GGNNCC 2 cut(s) 257, 899
BspMAI CTGCAG 1 cut(s) 75
BspOI GCTAGC 2 cut(s) 326, 968
BspPI GGATC 3 cut(s) 410, 415, 514
BspT104I TTCGAA 1 cut(s) 66
BsrBI CCGCTC 2 cut(s) 277, 919
BsrDI GCAATG 2 cut(s) 381, 1023
BsrI ACTGG 4 cut(s) 203, 431, 582, 845
BssECI CCNNGG 4 cut(s) 306, 358, 948, 1000
BssMI GATC 4 cut(s) 106, 407, 415, 519
BssNI GRCGYC 1 cut(s) 632
BssT1I CCWWGG 2 cut(s) 306, 948
Bst2UI CCWGG 3 cut(s) 359, 420, 1001
Bst4CI ACNGT 3 cut(s) 89, 225, 867
Bst6I CTCTTC 2 cut(s) 375, 1017
BstACI GRCGYC 1 cut(s) 632
BstAPI GCANNNNNTGC 1 cut(s) 398
BstBAI YACGTR 3 cut(s) 231, 548, 873
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 324, 966
BstDSI CCRYGG 2 cut(s) 306, 948
BstF5I GGATG 5 cut(s) 182, 287, 441, 824, 929
BstKTI GATC 4 cut(s) 109, 410, 418, 522
BstMAI GTCTC 2 cut(s) 357, 999
BstMBI GATC 4 cut(s) 106, 407, 415, 519
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 3 cut(s) 359, 420, 1001
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 3 cut(s) 357, 418, 999
BstSFI CTRYAG 2 cut(s) 71, 114
BstSLI GKGCMC 2 cut(s) 230, 872
BstV1I GCAGC 3 cut(s) 497, 554, 680
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BtgI CCRYGG 2 cut(s) 306, 948
BtrI CACGTC 1 cut(s) 78
BtsCI GGATG 5 cut(s) 182, 287, 441, 824, 929
BtsI GCAGTG 3 cut(s) 141, 449, 783
BtsIMutI CAGTG 5 cut(s) 141, 196, 449, 783, 838
Cac8I GCNNGC 2 cut(s) 324, 966
CseI GACGC 4 cut(s) 298, 467, 621, 940
Csp6I GTAC 4 cut(s) 7, 232, 447, 874
CviAII CATG 4 cut(s) 307, 679, 740, 949
CviQI GTAC 4 cut(s) 7, 232, 447, 874
DpnI GATC 4 cut(s) 108, 409, 417, 521
DpnII GATC 4 cut(s) 106, 407, 415, 519
Eam1104I CTCTTC 2 cut(s) 375, 1017
EarI CTCTTC 2 cut(s) 375, 1017
Eco130I CCWWGG 2 cut(s) 306, 948
Eco57I CTGAAG 4 cut(s) 314, 387, 708, 956
Eco72I CACGTG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 3 cut(s) 357, 418, 999
EcoT14I CCWWGG 2 cut(s) 306, 948
ErhI CCWWGG 2 cut(s) 306, 948
Esp3I CGTCTC 2 cut(s) 357, 999
FaeI CATG 4 cut(s) 310, 682, 743, 952
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FaqI GGGAC 5 cut(s) 25, 139, 288, 762, 930
FatI CATG 4 cut(s) 306, 678, 739, 948
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 7 cut(s) 275, 341, 511, 543, 669, 917, 983
FokI GGATG 5 cut(s) 189, 294, 428, 831, 936
Fsp4HI GCNGC 7 cut(s) 275, 341, 511, 543, 669, 917, 983
FspBI CTAG 4 cut(s) 101, 129, 323, 965
GluI GCNGC 7 cut(s) 275, 341, 511, 543, 669, 917, 983
GsaI CCCAGC 3 cut(s) 242, 542, 884
GsuI CTGGAG 2 cut(s) 414, 681
HapII CCGG 1 cut(s) 574
HgaI GACGC 4 cut(s) 298, 467, 621, 940
Hin1I GRCGYC 1 cut(s) 632
Hin1II CATG 4 cut(s) 310, 682, 743, 952
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 3 cut(s) 56, 490, 750
HpaII CCGG 1 cut(s) 574
Hpy166II GTNNAC 8 cut(s) 118, 228, 234, 288, 449, 870, 876, 930
Hpy188I TCNGA 6 cut(s) 61, 85, 281, 480, 589, 923
Hpy188III TCNNGA 7 cut(s) 101, 163, 405, 465, 653, 698, 805
Hpy8I GTNNAC 8 cut(s) 118, 228, 234, 288, 449, 870, 876, 930
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 2 cut(s) 53, 607
HpyCH4III ACNGT 3 cut(s) 89, 225, 867
HpyCH4IV ACGT 4 cut(s) 77, 230, 547, 872
HpyCH4V TGCA 6 cut(s) 53, 73, 134, 228, 668, 870
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpySE526I ACGT 4 cut(s) 77, 230, 547, 872
Hsp92I GRCGYC 1 cut(s) 632
Hsp92II CATG 4 cut(s) 310, 682, 743, 952
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 4 cut(s) 106, 407, 415, 519
LmnI GCTCC 3 cut(s) 261, 697, 903
Lsp1109I GCAGC 3 cut(s) 497, 554, 680
LweI GCATC 3 cut(s) 167, 655, 809
MaeI CTAG 4 cut(s) 101, 129, 323, 965
MaeII ACGT 4 cut(s) 77, 230, 547, 872
MaeIII GTNAC 2 cut(s) 735, 768
MalI GATC 4 cut(s) 108, 409, 417, 521
MbiI CCGCTC 2 cut(s) 277, 919
MboI GATC 4 cut(s) 106, 407, 415, 519
MboII GAAGA 6 cut(s) 178, 380, 392, 820, 1022, 1034
MfeI CAATTG 2 cut(s) 636, 714
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 2 cut(s) 230, 872
MluCI AATT 8 cut(s) 26, 140, 347, 601, 636, 714, 782, 989
MlyI GAGTC 3 cut(s) 50, 499, 744
MmeI TCCRAC 2 cut(s) 503, 556
MslI CAYNNNNRTG 1 cut(s) 663
MspI CCGG 1 cut(s) 574
MspR9I CCNGG 3 cut(s) 359, 420, 1001
MunI CAATTG 2 cut(s) 636, 714
Mva1269I GAATGC 3 cut(s) 154, 583, 796
MvaI CCWGG 3 cut(s) 359, 420, 1001
MwoI GCNNNNNNNGC 1 cut(s) 398
NcoI CCATGG 2 cut(s) 306, 948
NdeII GATC 4 cut(s) 106, 407, 415, 519
NheI GCTAGC 2 cut(s) 322, 964
NlaIII CATG 4 cut(s) 310, 682, 743, 952
NlaIV GGNNCC 2 cut(s) 257, 899
NmuCI GTSAC 1 cut(s) 735
NspI RCATGY 1 cut(s) 743
NspV TTCGAA 1 cut(s) 66
PciI ACATGT 1 cut(s) 739
PcsI WCGNNNNNNNCGW 1 cut(s) 442
PctI GAATGC 3 cut(s) 154, 583, 796
PflFI GACNNNGTC 1 cut(s) 79
PkrI GCNGC 7 cut(s) 276, 342, 512, 544, 670, 918, 984
PleI GAGTC 3 cut(s) 50, 498, 744
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
PpsI GAGTC 3 cut(s) 50, 498, 744
Ppu21I YACGTR 3 cut(s) 231, 548, 873
PscI ACATGT 1 cut(s) 739
Psp6I CCWGG 3 cut(s) 357, 418, 999
PspCI CACGTG 1 cut(s) 548
PspFI CCCAGC 3 cut(s) 238, 538, 880
PspGI CCWGG 3 cut(s) 357, 418, 999
PspN4I GGNNCC 2 cut(s) 257, 899
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 519
PsyI GACNNNGTC 1 cut(s) 79
RsaI GTAC 4 cut(s) 8, 233, 448, 875
RsaNI GTAC 4 cut(s) 7, 232, 447, 874
RseI CAYNNNNRTG 1 cut(s) 663
SatI GCNGC 7 cut(s) 275, 341, 511, 543, 669, 917, 983
Sau3AI GATC 4 cut(s) 106, 407, 415, 519
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 3 cut(s) 50, 499, 744
ScrFI CCNGG 3 cut(s) 359, 420, 1001
SduI GDGCHC 2 cut(s) 230, 872
SfaNI GCATC 3 cut(s) 167, 655, 809
SfcI CTRYAG 2 cut(s) 71, 114
SfuI TTCGAA 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 8 cut(s) 26, 140, 347, 601, 636, 714, 782, 989
SsiI CCGC 6 cut(s) 180, 275, 340, 822, 917, 982
SspMI CTAG 4 cut(s) 101, 129, 323, 965
StyD4I CCNGG 3 cut(s) 357, 418, 999
StyI CCWWGG 2 cut(s) 306, 948
TaaI ACNGT 3 cut(s) 89, 225, 867
TaiI ACGT 4 cut(s) 80, 233, 550, 875
TaqI TCGA 6 cut(s) 46, 66, 410, 466, 619, 753
TasI AATT 8 cut(s) 26, 140, 347, 601, 636, 714, 782, 989
TatI WGTACW 1 cut(s) 6
TauI GCSGC 4 cut(s) 277, 343, 919, 985
TscAI CASTG 5 cut(s) 141, 203, 456, 783, 845
TseFI GTSAC 1 cut(s) 735
TseI GCWGC 3 cut(s) 510, 542, 668
Tsp45I GTSAC 1 cut(s) 735
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 5 cut(s) 141, 203, 456, 783, 845
Tth111I GACNNNGTC 1 cut(s) 79
VneI GTGCAC 2 cut(s) 226, 868
XapI RAATTY 3 cut(s) 26, 347, 989
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 4 cut(s) 101, 129, 323, 965
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.