Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008787

Physical Location & Seq

Genomic Coordinates Reverse (-)

74394695 .. 74395745

Gene Structure 1051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG467000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAATGCGTGACTCAAAATGTCTTGAGCTCTTTCTTCTTCCTTGACATTTCAGGTTACCAAGCGGCGAAATCGTTGAATGCCCAGAAGTTCCTGAAGAAAATAGGATGCGGTAAAGAGGACTATCACTGGAAAAAAATCGGCAAGGCTTTACTGTGCACGTACACGCTGGGTGGAGTAGCTTGGCTCTACAATGAGAAATCGCCGCTCGGATGGTGCACGCTGAAACCTCGTCCCAAGGAGGGAAGAGAGCTAGCTCACTTGTATAAGCGGCAAGAATTTCCATACCCGGGAGACAAAGAAGCAATGGAAGAGTTTGTGGTAAAGGGTGGTATGACTGTTAAGGAGTTGCAGAATAAGAAATTTGAGCAGGAAGCGCAGAAGTTGTGGATCAGGATGAGGAATGAGGTCATTTTGGAGCTTCCAGATAAGGGTTATGATGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

17.29

Weight (kDa)

9.07

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58920
fragaria_vesca	FvH4_3g38110
malus_domestica	MD03G1077000.v1.1 MD11G1081300.v1.1
prunus_persica	Prupe.6G061600_v2.0.a1
pyrus_communis	pycom11g06950
rosa_chinensis	RchiOBHm_Chr5g0068461 RchiOBHm_Chr5g0068491
rosa_laevigata	RLG00000035977
rosa_multiflora	Rmu_sc0003221.1_g000018 Rmu_sc0005087.1_g000010 Rmu_sc0013656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012320 Rroxscaffold_1G00013060
rosa_rugosa	Rorug05G0390200
rosa_samantha	Rh5AG448800 Rh5BG466900 Rh5BG467000 Rh5BG467100 Rh5DG480300 Rh5DG480500
rosa_wichuraiana	Rw5G041890 Rw5G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AciI	CCGC	4 cut(s)	65, 111, 206, 271
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	278, 362
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	242, 290, 431
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	5 cut(s)	30, 182, 253, 257, 421
AluI	AGCT	5 cut(s)	30, 182, 253, 257, 421
Alw21I	GWGCWC	3 cut(s)	32, 161, 221
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	2 cut(s)	157, 217
AlwI	GGATC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	289
ApaLI	GTGCAC	2 cut(s)	157, 217
ApoI	RAATTY	2 cut(s)	278, 362
AspLEI	GCGC	1 cut(s)	379
AsuC2I	CCSGG	2 cut(s)	290, 291
AsuNHI	GCTAGC	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	289
BaeGI	GKGCMC	2 cut(s)	161, 221
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	3 cut(s)	32, 161, 221
BccI	CCATC	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	290, 291
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	3 cut(s)	66, 206, 272
BlsI	GCNGC	3 cut(s)	67, 207, 273
Bme1390I	CCNGG	2 cut(s)	290, 291
BmeT110I	CYCGRG	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	290, 291
BmsI	GCATC	1 cut(s)	98
BmtI	GCTAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	290, 291
BsaAI	YACGTR	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	237, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 290, 431
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	237, 289
BseGI	GGATG	3 cut(s)	113, 218, 402
BseLI	CCNNNNNNNGG	3 cut(s)	242, 290, 431
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	2 cut(s)	161, 221
BseYI	CCCAGC	1 cut(s)	169
BsiHKAI	GWGCWC	3 cut(s)	32, 161, 221
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	3 cut(s)	242, 290, 431
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	3 cut(s)	32, 161, 221
Bsp143I	GATC	1 cut(s)	390
BspACI	CCGC	4 cut(s)	65, 111, 206, 271
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	237, 289
BssMI	GATC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	156, 340
Bst6I	CTCTTC	2 cut(s)	241, 306
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	221, 255
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	113, 218, 402
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	288, 289
BstSLI	GKGCMC	2 cut(s)	161, 221
BtsCI	GGATG	3 cut(s)	113, 218, 402
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	221, 255
CfoI	GCGC	1 cut(s)	379
Cfr9I	CCCGGG	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	7 cut(s)	30, 149, 182, 187, 253, 257, 421
CviKI_1	RGCY	7 cut(s)	30, 149, 182, 187, 253, 257, 421
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
Eam1104I	CTCTTC	2 cut(s)	241, 306
EarI	CTCTTC	2 cut(s)	241, 306
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	237
FaiI	YATR	4 cut(s)	267, 286, 335, 438
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	66, 206, 272
FokI	GGATG	3 cut(s)	120, 225, 409
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	66, 206, 272
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	3 cut(s)	66, 206, 272
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	159, 165, 219
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	4 cut(s)	25, 94, 394, 425
Hpy8I	GTNNAC	3 cut(s)	159, 165, 219
HpyCH4III	ACNGT	2 cut(s)	156, 340
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	159, 219, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpySE526I	ACGT	1 cut(s)	161
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	9 cut(s)	39, 98, 107, 115, 155, 303, 356, 379, 438
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	10, 56
MalI	GATC	1 cut(s)	392
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	1 cut(s)	390
MboII	GAAGA	5 cut(s)	28, 31, 109, 258, 323
MhlI	GDGCHC	3 cut(s)	32, 161, 221
MluCI	AATT	2 cut(s)	278, 362
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	112, 235, 240, 393, 400
MseI	TTAA	1 cut(s)	342
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	290, 291
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	376
NciI	CCSGG	2 cut(s)	290, 291
NdeII	GATC	1 cut(s)	390
NheI	GCTAGC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	10
PctI	GAATGC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	67, 207, 273
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	32
PspEI	GGTNACC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	66, 206, 272
Sau3AI	GATC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	290, 291
SduI	GDGCHC	3 cut(s)	32, 161, 221
SetI	ASST	9 cut(s)	32, 58, 164, 184, 232, 255, 259, 411, 423
SfaNI	GCATC	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	2 cut(s)	278, 362
SsiI	CCGC	4 cut(s)	65, 111, 206, 271
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	288, 289
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	156, 340
TaiI	ACGT	1 cut(s)	164
TasI	AATT	2 cut(s)	278, 362
TauI	GCSGC	3 cut(s)	68, 208, 274
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	289
TspRI	CASTG	1 cut(s)	134
VneI	GTGCAC	2 cut(s)	157, 217
XapI	RAATTY	2 cut(s)	278, 362
XmaI	CCCGGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.