Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008787

Physical Location & Seq

Genomic Coordinates Reverse (-)

73557755 .. 73560132

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCATCATCTATTAAGCGTTATCAAGCGGCGAAATCGTTGAATGCCCAGAAGTTCCTGAAGAAAATAGGATGCGGTAAAGAGGACTATCACTGGAAAAAAATCGGCAAGGCTTTACTGTGCACGTACACGCTGGGTGGAGTAGCTTGGCTCTACAATGAGAAATCGCCGCTCGGATGGTGGACGCTGAAACCTCGTCCCAAGGAGGGAAGAGAGCTAGCTCACTTGTATAAGCGGCAAGAATTTCCATACCTGGGAGACAAAGAAGCAACAGAAGAGTTTGTGGCAAAGGGTGGTATGACTGTTAAGGAGTTGCAGAATAAGAAATTTGAGCAGGAAGCGCAGAAGTTGTGGATCAGGATGAGGAATGAGGTCATTTTGGAGCTTCCAGATAAGGGTTATGATGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.98

Weight (kDa)

9.41

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58920
fragaria_vesca	FvH4_3g38110
malus_domestica	MD03G1077000.v1.1 MD11G1081300.v1.1
prunus_persica	Prupe.6G061600_v2.0.a1
pyrus_communis	pycom11g06950
rosa_chinensis	RchiOBHm_Chr5g0068461 RchiOBHm_Chr5g0068491
rosa_laevigata	RLG00000035977
rosa_multiflora	Rmu_sc0003221.1_g000018 Rmu_sc0005087.1_g000010 Rmu_sc0013656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012320 Rroxscaffold_1G00013060
rosa_rugosa	Rorug05G0390200
rosa_samantha	Rh5AG448800 Rh5BG466900 Rh5BG467000 Rh5BG467100 Rh5DG480300 Rh5DG480500
rosa_wichuraiana	Rw5G041890 Rw5G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	4 cut(s)	29, 75, 170, 235
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	242, 326
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	206, 254, 395
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	4 cut(s)	146, 217, 221, 385
AluI	AGCT	4 cut(s)	146, 217, 221, 385
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	362
ApaLI	GTGCAC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	242, 326
AspLEI	GCGC	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	125
BccI	CCATC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	3 cut(s)	30, 170, 236
BlsI	GCNGC	3 cut(s)	31, 171, 237
Bme1390I	CCNGG	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	14, 62
BmtI	GCTAGC	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	201, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 254, 395
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	201, 253
BseGI	GGATG	3 cut(s)	77, 182, 366
BseLI	CCNNNNNNNGG	3 cut(s)	206, 254, 395
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	206, 254, 395
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	4 cut(s)	29, 75, 170, 235
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	201, 253
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	120, 304
Bst6I	CTCTTC	2 cut(s)	205, 270
BstBAI	YACGTR	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	77, 182, 366
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	125
BtsCI	GGATG	3 cut(s)	77, 182, 366
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	343
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	127
CviJI	RGCY	6 cut(s)	113, 146, 151, 217, 221, 385
CviKI_1	RGCY	6 cut(s)	113, 146, 151, 217, 221, 385
CviQI	GTAC	1 cut(s)	127
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	205, 270
EarI	CTCTTC	2 cut(s)	205, 270
Eco130I	CCWWGG	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaiI	YATR	4 cut(s)	231, 250, 299, 402
FaqI	GGGAC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	30, 170, 236
FokI	GGATG	3 cut(s)	84, 189, 373
Fsp4HI	GCNGC	3 cut(s)	30, 170, 236
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	3 cut(s)	30, 170, 236
GsaI	CCCAGC	1 cut(s)	137
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	123, 129, 183
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	3 cut(s)	58, 358, 389
Hpy8I	GTNNAC	3 cut(s)	123, 129, 183
HpyCH4III	ACNGT	2 cut(s)	120, 304
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	123, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpySE526I	ACGT	1 cut(s)	125
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	9 cut(s)	62, 71, 79, 119, 239, 266, 320, 343, 402
LweI	GCATC	2 cut(s)	14, 62
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	125
MalI	GATC	1 cut(s)	356
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	73, 222, 287
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	242, 326
MnlI	CCTC	5 cut(s)	76, 199, 204, 357, 364
MseI	TTAA	2 cut(s)	15, 306
MspR9I	CCNGG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	1 cut(s)	354
NheI	GCTAGC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	31, 171, 237
Ppu21I	YACGTR	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	252
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	15, 306
SatI	GCNGC	3 cut(s)	30, 170, 236
Sau3AI	GATC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	8 cut(s)	128, 148, 196, 219, 223, 255, 375, 387
SfaNI	GCATC	2 cut(s)	14, 62
Sse9I	AATT	2 cut(s)	242, 326
SsiI	CCGC	4 cut(s)	29, 75, 170, 235
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	120, 304
TaiI	ACGT	1 cut(s)	128
TasI	AATT	2 cut(s)	242, 326
TauI	GCSGC	3 cut(s)	32, 172, 238
Tru1I	TTAA	2 cut(s)	15, 306
Tru9I	TTAA	2 cut(s)	15, 306
TscAI	CASTG	1 cut(s)	98
TspRI	CASTG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	121
XapI	RAATTY	2 cut(s)	242, 326
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.