Prupe.6G061600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008787
Physical Location & Seq
Forward (+)
4270508 .. 4271179
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G061600.1

Sequence Viewer

Length: 495 bp
ATGATTCGCAAACGCTATCAGGATGTCAAAGCAGGGTACCAATTGGCCAAATCGTTGAACGCTCAGAAGTACTTGAAGAAGATAGGACTGGGCAAGGAAGACTACTACTTCTGGAAACAAATAGGCAAGGCTTTGCTATGCACATACACTCTTTTCGGCGTAGCGTGGCTCTACAACGAGAAATCACCACTCGGCTGGTGGACGCTGAAGCCTAAGCCCAAGGAAGAGAGGGAGCTGGCGCACCTGTACGAGCGTCGACAGTTCCCCTACCCGGGCGACGAAGAAGCCATGGAAGAGTTTGTTGCCAAGGGGGGAATGATCGGCACGACAATTGGCCCGAAAGGGTTCGTTGAGACGGACAAAGATGCGTTTAATTATCAGAAGGAGTTGCAGAATAAGAAGCTGGATCAGGAAGCTCAGAAGCTGTGGTTGAGGATGAAGAATGAGGTCATTCAGGAGCTTCAAGAGAAGGGCTACGTAGGTGACGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

19.27

Weight (kDa)

8.92

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 36
AccI GTMKAC 1 cut(s) 256
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 3 cut(s) 38, 71, 248
AfiI CCNNNNNNNGG 2 cut(s) 271, 272
AgsI TTSAA 3 cut(s) 58, 76, 464
AluBI AGCT 5 cut(s) 235, 403, 416, 424, 460
AluI AGCT 5 cut(s) 235, 403, 416, 424, 460
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 414
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 2 cut(s) 45, 334
Asp700I GAANNNNTTC 1 cut(s) 344
Asp718I GGTACC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 2 cut(s) 272, 273
AsuHPI GGTGA 2 cut(s) 177, 494
AvaI CYCGRG 1 cut(s) 271
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 272, 273
BcoDI GTCTC 1 cut(s) 347
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 272, 273
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 2 cut(s) 272, 273
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 2 cut(s) 272, 273
BsaAI YACGTR 1 cut(s) 478
BsaJI CCNNGG 4 cut(s) 219, 271, 288, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 272
Bse1I ACTGG 1 cut(s) 93
BseDI CCNNGG 4 cut(s) 219, 271, 288, 306
BseGI GGATG 2 cut(s) 28, 441
BseLI CCNNNNNNNGG 2 cut(s) 271, 272
BseMII CTCAG 3 cut(s) 77, 431, 480
BseNI ACTGG 1 cut(s) 93
BshFI GGCC 2 cut(s) 47, 336
BshNI GGYRCC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 271, 272
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsnI GGCC 2 cut(s) 47, 336
BsoBI CYCGRG 1 cut(s) 271
Bsp143I GATC 2 cut(s) 318, 406
Bsp19I CCATGG 1 cut(s) 288
BspANI GGCC 2 cut(s) 47, 336
BspCNI CTCAG 3 cut(s) 76, 430, 481
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 4 cut(s) 219, 271, 288, 306
BssMI GATC 2 cut(s) 318, 406
BssT1I CCWWGG 3 cut(s) 219, 288, 306
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 219, 288
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 63, 213, 417, 489
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 2 cut(s) 28, 441
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 321, 409
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 2 cut(s) 318, 406
BstSCI CCNGG 2 cut(s) 270, 271
BstSNI TACGTA 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 195
BsuRI GGCC 2 cut(s) 47, 336
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 2 cut(s) 28, 441
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 335
Cfr9I CCCGGG 1 cut(s) 271
CseI GACGC 2 cut(s) 211, 242
Csp6I GTAC 3 cut(s) 37, 70, 247
CviAII CATG 1 cut(s) 289
CviQI GTAC 3 cut(s) 37, 70, 247
DdeI CTNAG 4 cut(s) 63, 213, 417, 489
DpnI GATC 2 cut(s) 320, 408
DpnII GATC 2 cut(s) 318, 406
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 219, 288
EarI CTCTTC 2 cut(s) 219, 288
Eco105I TACGTA 1 cut(s) 478
Eco130I CCWWGG 3 cut(s) 219, 288, 306
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 271
EcoT14I CCWWGG 3 cut(s) 219, 288, 306
ErhI CCWWGG 3 cut(s) 219, 288, 306
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 1 cut(s) 292
FaiI YATR 3 cut(s) 139, 145, 290
FatI CATG 1 cut(s) 288
FblI GTMKAC 1 cut(s) 256
FokI GGATG 2 cut(s) 35, 448
GlaI GCGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 47, 336
HapII CCGG 1 cut(s) 272
HgaI GACGC 2 cut(s) 211, 242
HhaI GCGC 1 cut(s) 241
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 272
HphI GGTGA 2 cut(s) 177, 494
Hpy166II GTNNAC 2 cut(s) 201, 257
Hpy188I TCNGA 3 cut(s) 66, 381, 420
Hpy188III TCNNGA 5 cut(s) 20, 112, 410, 455, 464
Hpy8I GTNNAC 2 cut(s) 201, 257
Hpy99I CGWCG 2 cut(s) 258, 281
HpyAV CCTTC 2 cut(s) 376, 463
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 141, 391
HpyF3I CTNAG 4 cut(s) 63, 213, 417, 489
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 239
KpnI GGTACC 1 cut(s) 40
Kzo9I GATC 2 cut(s) 318, 406
LmnI GCTCC 2 cut(s) 232, 457
LweI GCATC 1 cut(s) 355
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 482
MalI GATC 2 cut(s) 320, 408
MboI GATC 2 cut(s) 318, 406
MboII GAAGA 7 cut(s) 88, 91, 110, 236, 293, 305, 451
MfeI CAATTG 2 cut(s) 41, 330
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 3 cut(s) 41, 330, 373
MluNI TGGCCA 1 cut(s) 47
MnlI CCTC 3 cut(s) 222, 426, 439
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 344
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 272, 273
MunI CAATTG 2 cut(s) 41, 330
NciI CCSGG 2 cut(s) 272, 273
NcoI CCATGG 1 cut(s) 288
NdeII GATC 2 cut(s) 318, 406
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 4
Ppu21I YACGTR 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 424
RsaI GTAC 3 cut(s) 38, 71, 248
RsaNI GTAC 3 cut(s) 37, 70, 247
SalI GTCGAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 2 cut(s) 318, 406
Sau96I GGNCC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 272, 273
SetI ASST 9 cut(s) 237, 246, 405, 418, 426, 450, 462, 480, 484
SfaNI GCATC 1 cut(s) 355
SmaI CCCGGG 1 cut(s) 273
SnaBI TACGTA 1 cut(s) 478
Sse9I AATT 3 cut(s) 41, 330, 373
StyD4I CCNGG 2 cut(s) 270, 271
StyI CCWWGG 3 cut(s) 219, 288, 306
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 256
TasI AATT 3 cut(s) 41, 330, 373
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseFI GTSAC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 452
TspGWI ACGGA 1 cut(s) 371
TspMI CCCGGG 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmaI CCCGGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.