Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003221.1

Orthogroup ID

OG0008787

Physical Location & Seq

Genomic Coordinates Forward (+)

50317 .. 50679

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003221.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaaatgtgtgactcaaaatgtcttgagctctttcttcttccttgacatttcaggttaccaagcggcgaaatcgttgaatgcccagaagatcctgaagaaaatagaatgcggtaaagaggactaccactggaaacaaatcggcaaggctttactgtgcacgtacacgctgggtggagtagcttggctctacaatgagaaatcgcccctcgaatggtggatgctgaagcatcgtcccaaggaggagagagagctagctcacttgtatgagtggcgagaatttccatacccgggagacgaagaagcaatggaagagtttgtggcaaagggtggtatgattgttgtaagaaattctaaatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

14.04

Weight (kDa)

7.69

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58920
fragaria_vesca	FvH4_3g38110
malus_domestica	MD03G1077000.v1.1 MD11G1081300.v1.1
prunus_persica	Prupe.6G061600_v2.0.a1
pyrus_communis	pycom11g06950
rosa_chinensis	RchiOBHm_Chr5g0068461 RchiOBHm_Chr5g0068491
rosa_laevigata	RLG00000035977
rosa_multiflora	Rmu_sc0003221.1_g000018 Rmu_sc0005087.1_g000010 Rmu_sc0013656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012320 Rroxscaffold_1G00013060
rosa_rugosa	Rorug05G0390200
rosa_samantha	Rh5AG448800 Rh5BG466900 Rh5BG467000 Rh5BG467100 Rh5DG480300 Rh5DG480500
rosa_wichuraiana	Rw5G041890 Rw5G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 111
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	278, 349
AcuI	CTGAAG	2 cut(s)	116, 245
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	213, 290
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	4 cut(s)	30, 182, 253, 257
AluI	AGCT	4 cut(s)	30, 182, 253, 257
Alw21I	GWGCWC	2 cut(s)	32, 161
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	278, 349
AsuC2I	CCSGG	2 cut(s)	290, 291
AsuNHI	GCTAGC	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	32, 161
BcnI	CCSGG	2 cut(s)	290, 291
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	290, 291
BmeT110I	CYCGRG	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	290, 291
BmsI	GCATC	2 cut(s)	210, 238
BmtI	GCTAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	290, 291
BsaAI	YACGTR	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	237, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 290
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	237, 289
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	213, 290
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	32, 161
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	213, 290
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	2 cut(s)	85, 113
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	32, 161
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	65, 111
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	237, 289
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	288, 289
BstSLI	GKGCMC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	255
Cfr9I	CCCGGG	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	6 cut(s)	30, 149, 182, 187, 253, 257
CviKI_1	RGCY	6 cut(s)	30, 149, 182, 187, 253, 257
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	116, 245
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	288
FaiI	YATR	4 cut(s)	267, 286, 335, 361
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	1 cut(s)	290
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	159, 165
Hpy188III	TCNNGA	2 cut(s)	25, 94
Hpy8I	GTNNAC	2 cut(s)	159, 165
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	39, 98, 107, 115, 155, 303
LweI	GCATC	2 cut(s)	210, 238
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	10, 56
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	6 cut(s)	28, 31, 100, 109, 311, 323
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	32, 161
MluCI	AATT	2 cut(s)	278, 349
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	3 cut(s)	112, 218, 235
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	290, 291
Mva1269I	GAATGC	2 cut(s)	85, 113
NciI	CCSGG	2 cut(s)	290, 291
NdeII	GATC	1 cut(s)	90
NheI	GCTAGC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	10
PctI	GAATGC	2 cut(s)	85, 113
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	32
PspEI	GGTNACC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	290, 291
SduI	GDGCHC	2 cut(s)	32, 161
SetI	ASST	6 cut(s)	32, 58, 164, 184, 255, 259
SfaNI	GCATC	2 cut(s)	210, 238
SmaI	CCCGGG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	2 cut(s)	278, 349
SsiI	CCGC	2 cut(s)	65, 111
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	288, 289
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	278, 349
TauI	GCSGC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	289
TspRI	CASTG	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	278, 349
XmaI	CCCGGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.