Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008787

Physical Location & Seq

Genomic Coordinates Reverse (-)

74470310 .. 74471368

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAATGCGTGACTCAAAATGTCTTGAGCTCTTTCTTCTTCCTTGACATTTCAGGTTACCAGGCGGCGAAATCGTTGAATGCCCAGAAGTTCCTGAAGAAAACAGGATGCGGTAAAGAGGACTACCACTGGAAACAAATCGACAAGGCTTTACTGTGCACGTACACGCTGGATGGAGTAGCTTGGCTCTACAATGAGAAATCGCCGCTCGGATGGTGGATGCTGAAGCCTCGTCCCAAGGAGGAGAGAGAGCTAGATCACTTGTATAAGCGGCAAGAATTTCCATACCTGGGAGACGAAGAAGCAATGGAAGAGTTTGTGGCAAAGGGTGGTATGATTGTTAAGGAGTTGCAGAATAAGAAATTTGAGCAGGAAGTGCAGAGGTTGTGGATCAAGATGAGGAATAAGGTCATTTTGGAGCTTCCAGATAAGGGTTATGATGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

17.65

Weight (kDa)

7.64

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58920
fragaria_vesca	FvH4_3g38110
malus_domestica	MD03G1077000.v1.1 MD11G1081300.v1.1
prunus_persica	Prupe.6G061600_v2.0.a1
pyrus_communis	pycom11g06950
rosa_chinensis	RchiOBHm_Chr5g0068461 RchiOBHm_Chr5g0068491
rosa_laevigata	RLG00000035977
rosa_multiflora	Rmu_sc0003221.1_g000018 Rmu_sc0005087.1_g000010 Rmu_sc0013656.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012320 Rroxscaffold_1G00013060
rosa_rugosa	Rorug05G0390200
rosa_samantha	Rh5AG448800 Rh5BG466900 Rh5BG467000 Rh5BG467100 Rh5DG480300 Rh5DG480500
rosa_wichuraiana	Rw5G041890 Rw5G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AciI	CCGC	4 cut(s)	65, 111, 206, 271
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	278, 362
AcuI	CTGAAG	2 cut(s)	116, 245
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	290, 431
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	60, 288
AluBI	AGCT	4 cut(s)	30, 182, 253, 421
AluI	AGCT	4 cut(s)	30, 182, 253, 421
Alw21I	GWGCWC	2 cut(s)	32, 161
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	398
ApaLI	GTGCAC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	278, 362
BaeGI	GKGCMC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	32, 161
BccI	CCATC	2 cut(s)	167, 207
BciT130I	CCWGG	2 cut(s)	62, 290
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	3 cut(s)	66, 206, 272
BlsI	GCNGC	3 cut(s)	67, 207, 273
Bme1390I	CCNGG	2 cut(s)	62, 290
BmrFI	CCNGG	2 cut(s)	62, 290
BmsI	GCATC	2 cut(s)	98, 210
BpuEI	CTTGAG	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	237, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 431
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	62, 290
BseDI	CCNNGG	2 cut(s)	237, 289
BseGI	GGATG	4 cut(s)	113, 178, 218, 225
BseLI	CCNNNNNNNGG	2 cut(s)	290, 431
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	32, 161
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	290, 431
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	32, 161
Bsp143I	GATC	2 cut(s)	256, 390
BspACI	CCGC	4 cut(s)	65, 111, 206, 271
BspPI	GGATC	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	237, 289
BssMI	GATC	2 cut(s)	256, 390
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	62, 290
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	162
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	4 cut(s)	113, 178, 218, 225
BstKTI	GATC	2 cut(s)	259, 393
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	256, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	2 cut(s)	62, 290
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	60, 288
BstSLI	GKGCMC	1 cut(s)	161
BtsCI	GGATG	4 cut(s)	113, 178, 218, 225
BtsIMutI	CAGTG	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	7 cut(s)	30, 149, 182, 187, 229, 253, 421
CviKI_1	RGCY	7 cut(s)	30, 149, 182, 187, 229, 253, 421
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	2 cut(s)	258, 392
DpnII	GATC	2 cut(s)	256, 390
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	116, 245
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	60, 288
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	288
FaiI	YATR	4 cut(s)	267, 286, 335, 438
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	66, 206, 272
FokI	GGATG	4 cut(s)	120, 185, 225, 232
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	66, 206, 272
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	3 cut(s)	66, 206, 272
HinfI	GANTC	1 cut(s)	13
Hpy166II	GTNNAC	2 cut(s)	159, 165
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	4 cut(s)	25, 94, 394, 425
Hpy8I	GTNNAC	2 cut(s)	159, 165
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	159, 352, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpySE526I	ACGT	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	256, 390
LmnI	GCTCC	1 cut(s)	418
LweI	GCATC	2 cut(s)	98, 210
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	10, 56
MalI	GATC	2 cut(s)	258, 392
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	2 cut(s)	256, 390
MboII	GAAGA	5 cut(s)	28, 31, 109, 311, 323
MhlI	GDGCHC	2 cut(s)	32, 161
MluCI	AATT	2 cut(s)	278, 362
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	112, 235, 240, 375, 393
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	62, 290
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	62, 290
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	2 cut(s)	256, 390
NmuCI	GTSAC	1 cut(s)	10
PctI	GAATGC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	67, 207, 273
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	60, 288
PspEI	GGTNACC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	60, 288
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	66, 206, 272
Sau3AI	GATC	2 cut(s)	256, 390
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	62, 290
SduI	GDGCHC	2 cut(s)	32, 161
SetI	ASST	9 cut(s)	32, 58, 164, 184, 255, 291, 386, 411, 423
SfaNI	GCATC	2 cut(s)	98, 210
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	2 cut(s)	278, 362
SsiI	CCGC	4 cut(s)	65, 111, 206, 271
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	60, 288
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	278, 362
TauI	GCSGC	3 cut(s)	68, 208, 274
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	278, 362
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.