Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005548

Physical Location & Seq

Genomic Coordinates Forward (+)

7294489 .. 7295247

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1086600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAATTATAATTGCAATTGCCTCAAAAGTTGGAGAGTGCTTGGTCACACCAATAGGAACAGAGTTTGGCTATTTGATTAATTACCATTCCAACCTGGAAAATCTTAAGGGTGAGATAAAAAAGCTTTTTGACAAGAAAGATGGAGTGCAAGGATTGGTAGATGCTGCCCAAAGGAACAGTGAAAGTATCAAACCTGATGTTCAGAGTTGGCTAAAGAATGTGAACAACATGATCCAGAAAGTGTTACATTTTGAGGATGAAATTAACAAGAAAAGGCGATGTATGAATCGATGGAGCTTGAGTCGGAAAGCCTATAAGATTACACAACATGTTCTTCAGCTCCAAAACGAAGGAACATTTGAAAATGTGGCCCATCCTGCACCTCCACGAGGGATATGGTCAAAATTCAAGAAAGGTTTCAAGGACTTTAAGTCCAGAACGGCATACATGAATGAGGTGATAGAGGGTTTGAAGAGGGAACAAGTACGAATGATCGGGATTTGTGGAATGGGGGGTGTGGGTAAAACGACAATGGCGAAAGAAATCATCACAAGATTGGCAAAACTGAACCTGTTTGATAATATTGTAATGGCAACTGTGTCTCAAAGTCCAAGTATTAGCAAGATCCAGTCGGAAATTGCAGACCAAATAGGTTTGGAATTGAAGGAGGAATCCGAGTCCGGAAGAGCAATAAAGCTGCATGGGAAACTCATGGAAATAAAGATCCTGATTGTATTAGATGATGTCTGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

253

Amino Acids

28.53

Weight (kDa)

9.29

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	149 - 252	1.8e-19	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005548)

Species	Orthologous Gene IDs
malus_domestica	MD03G1081300.v1.1 MD11G1085800.v1.1 MD11G1086000.v1.1 MD11G1086600.v1.1 MD11G1087300.v1.1 MD11G1088400.v1.1 MD11G1089600.v1.1 MD11G1090100.v1.1
prunus_persica	Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025400_v2.0.a1 Prupe.2G027200_v2.0.a1 Prupe.2G029200_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.3G141500_v2.0.a1 Prupe.7G035000_v2.0.a1 Prupe.7G035600_v2.0.a1 Prupe.7G036900_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037700_v2.0.a1
pyrus_communis	pycom11g07400 pycom11g07460 pycom11g07480 pycom11g07490 pycom15g14960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	683
AclWI	GGATC	3 cut(s)	229, 622, 721
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	365, 412, 424, 475, 667
AhdI	GACNNNNNGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	127, 300, 343, 700
AluI	AGCT	4 cut(s)	127, 300, 343, 700
Alw26I	GTCTC	1 cut(s)	609
AlwI	GGATC	3 cut(s)	229, 622, 721
Aor13HI	TCCGGA	1 cut(s)	683
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	167, 700
ApoI	RAATTY	1 cut(s)	407
AseI	ATTAAT	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	125, 472
BauI	CACGAG	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	154, 687
BccI	CCATC	3 cut(s)	137, 288, 384
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	2 cut(s)	168, 701
BlsI	GCNGC	2 cut(s)	169, 702
Bme1390I	CCNGG	1 cut(s)	98
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	683
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	631
BseAI	TCCGGA	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	292
BseGI	GGATG	2 cut(s)	265, 376
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	631
BseXI	GCAGC	2 cut(s)	154, 687
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	374
BshVI	ATCGAT	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	374
Bsp13I	TCCGGA	1 cut(s)	683
Bsp143I	GATC	4 cut(s)	234, 495, 627, 726
BspANI	GGCC	1 cut(s)	374
BspDI	ATCGAT	1 cut(s)	292
BspEI	TCCGGA	1 cut(s)	683
BspPI	GGATC	3 cut(s)	229, 622, 721
BspQI	GCTCTTC	1 cut(s)	682
BspTI	CTTAAG	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	631
BssMI	GATC	4 cut(s)	234, 495, 627, 726
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	182, 601
Bst6I	CTCTTC	2 cut(s)	470, 682
BstAFI	CTTAAG	1 cut(s)	107
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	265, 376
BstKTI	GATC	4 cut(s)	237, 498, 630, 729
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	4 cut(s)	234, 495, 627, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	154, 687
BstX2I	RGATCY	2 cut(s)	627, 726
BstYI	RGATCY	2 cut(s)	627, 726
Bsu15I	ATCGAT	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	374
BsuTUI	ATCGAT	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	265, 376
BtsIMutI	CAGTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	5 cut(s)	232, 332, 451, 704, 715
CviJI	RGCY	8 cut(s)	72, 127, 214, 300, 314, 343, 374, 700
CviKI_1	RGCY	8 cut(s)	72, 127, 214, 300, 314, 343, 374, 700
CviQI	GTAC	1 cut(s)	488
DpnI	GATC	4 cut(s)	236, 497, 629, 728
DpnII	GATC	4 cut(s)	234, 495, 627, 726
DriI	GACNNNNNGTC	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	470, 682
Eam1105I	GACNNNNNGTC	1 cut(s)	433
EarI	CTCTTC	2 cut(s)	470, 682
Eco57I	CTGAAG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	5 cut(s)	235, 335, 454, 707, 718
FatI	CATG	5 cut(s)	231, 331, 450, 703, 714
Fnu4HI	GCNGC	2 cut(s)	168, 701
FokI	GGATG	2 cut(s)	272, 363
Fsp4HI	GCNGC	2 cut(s)	168, 701
GluI	GCNGC	2 cut(s)	168, 701
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	684
Hin1II	CATG	5 cut(s)	235, 335, 454, 707, 718
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	4 cut(s)	289, 304, 674, 680
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	2 cut(s)	125, 472
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	4 cut(s)	207, 309, 637, 679
Hpy188III	TCNNGA	7 cut(s)	238, 412, 438, 499, 684, 730, 751
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	347, 661
HpyCH4III	ACNGT	2 cut(s)	182, 601
HpyCH4V	TGCA	5 cut(s)	17, 151, 383, 644, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
Hsp92II	CATG	5 cut(s)	235, 335, 454, 707, 718
Kpn2I	TCCGGA	1 cut(s)	683
Kzo9I	GATC	4 cut(s)	234, 495, 627, 726
LguI	GCTCTTC	1 cut(s)	682
LmnI	GCTCC	2 cut(s)	297, 348
Lsp1109I	GCAGC	2 cut(s)	154, 687
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	2 cut(s)	46, 246
MalI	GATC	4 cut(s)	236, 497, 629, 728
MboI	GATC	4 cut(s)	234, 495, 627, 726
MboII	GAAGA	3 cut(s)	329, 487, 699
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	2 cut(s)	627, 726
MluCI	AATT	8 cut(s)	6, 12, 18, 82, 264, 407, 639, 662
MlyI	GAGTC	2 cut(s)	313, 689
MmeI	TCCRAC	4 cut(s)	13, 117, 287, 615
MnlI	CCTC	8 cut(s)	34, 250, 386, 396, 451, 460, 471, 664
MroI	TCCGGA	1 cut(s)	683
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	4 cut(s)	81, 108, 267, 432
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	4 cut(s)	234, 495, 627, 726
NlaIII	CATG	5 cut(s)	235, 335, 454, 707, 718
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	335
PciI	ACATGT	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	289, 674
PkrI	GCNGC	2 cut(s)	169, 702
PleI	GAGTC	2 cut(s)	312, 688
PpsI	GAGTC	2 cut(s)	312, 688
PscI	ACATGT	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	627, 726
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	682
SaqAI	TTAA	4 cut(s)	81, 108, 267, 432
SatI	GCNGC	2 cut(s)	168, 701
Sau3AI	GATC	4 cut(s)	234, 495, 627, 726
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	313, 689
ScrFI	CCNGG	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	107, 301
SmoI	CTYRAG	2 cut(s)	107, 301
Sse9I	AATT	8 cut(s)	6, 12, 18, 82, 264, 407, 639, 662
SspI	AATATT	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	182, 601
TaqI	TCGA	1 cut(s)	292
TasI	AATT	8 cut(s)	6, 12, 18, 82, 264, 407, 639, 662
TfiI	GAWTC	2 cut(s)	289, 674
Tru1I	TTAA	4 cut(s)	81, 108, 267, 432
Tru9I	TTAA	4 cut(s)	81, 108, 267, 432
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	167, 700
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	276, 302, 467
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	107
VspI	ATTAAT	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.