MD11G1087300.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
7318219 .. 7320170
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1087300.v1.1.491

Sequence Viewer

Length: 1890 bp
ATGGAAATTATAATTGCAATTGCCTCAAAAATTGGAGAGTCCTTGGTCACACCAATAGGAACAGAGTTTGGCTATTTGGTTAATTACCATTCCAACCTTGAAAGTCTTAGGGGTGAGATAAAAAAGCTTTTTGACAAGAATGATGGAGTGCAAAGATTGGTAGATGCTGCCAAAAGGAATGGTGAAATCATCAAACCTGATGTTCAGAGTTGGCTAAAGAATGTGAACGACGACATGGTCAAAAAAGTGTTGCAGTTTGAGGATGAAATTAACAAGAAAAGGCGATGTGTGTATCGATGGAGCTTGAGTCGGAGAGCCTATAAGATTAAACAAGAAGTTCTTCAGCTCCAAAACGAAGGAGCATTTGAAAATATGGCCCATCCTGCACCTTCACCAGAGATATGGTCAACATTCAAGAAAGGTTTTAAGGATTTCAAGTCCAGAATGGCATACATGAATAAGGTGATAGAGGGTTTGAAGAGGGAACGAGTACGAATGATCGGGATTTGTGGAATGGGGGGTGTGGGTAAAACCATAATGGTGAAAGAAATCATCGTAAGATTGGCAAAACTAGACTTGTTTGATAAAATTGTAATGGCAACTGTGTCTCAAAGTCCAAGTATTAGGATGATCCAGTCGGAAATTGCAGACAAAATAGGTTTGAAATTTGAGGAGGAATCAGAGCCCGGAAGAGCACTAAAGCTACGTGGGAGACTCATGGAAATAAAGAGGATCCTGATTGTATTAGATGATGTCTGGACAGAGCTTAATTTTGAGGCTATAGGACTCCCTTGTGGAGATGATCATGAAGGGTGCAAAGTTTTGTTGACATCACGAGATTCGGAAGTCTGCAACAGGATGGGAAGTCAACAAATTATTGCTGTCCCGATTTTAACACCAGAAGAATCACAGGAGCTCTTTCGAGAAATGGTAGGTGAATCCTTCAATGATCCTTATTTACGTTCCACTACAAAAGATGTATTGAAGGAATGTGGAGGTTTACCTATTGCAATTGTAACTGTTGGAAAAGCCCTAGAAAAGAAAAACAAGTGTGAATGGGATGATGCCCTTAATCAGCTGCGAAAATCTACCCCAGTGAACATCCCTGGAGTGAATGACAAAGTTTATTCTAGCATAAAATGGAGTTATGATAGATTGGAGAGTGATGAAGCCAGGTCATGTCTTTTACTTTGTTGTTTATTTCCAGAAGATTATGATATTCCAATTGAGTATTTGATTCGATATGGGTGGGGTCGAGGATATTTTAGCAACATCTTTACTTTGGAAGATGCAAGAAATAGAGTGCATTATTTGGTTGGCCAACTAAAAAGAAGGTTTTTGTTGCTCGATAGTGGCAAGAGTGAGGCTACAAAAATGCATGACGTAGTTCGCGATGTTGCCATATGGATTGCTTCAAGAGATCCACATGGATTTTTGATAAGAAGTGATGCTGAAAATAAAGGGTGGCCAAATTTAGCTACATATGACCATTACACTACCATCTCACTTGTTGGCGAATTGGAGATTCAACATGGTTTGAAATGCCCAAAACTTGAGCTTCTACAGACGATGGAAGGACGTTTTTCAGAAGGTAGCATGGACAACATTTGTAAGGCGATGAAAGAACTGAAGGTTTTAGCTTTGGTGGGAATGGAAATGGAAGACCTAGGCTCATCAAGATCACTAGGATTACTGAAGAATCTGCGGACCTTGTGCCTAGATGGGTCTAATTTTGATGGCACGTCTACTGATGTTATTGGGAGTTTGGAGAATTTAGAAATCCTCAGCTTTCGGGAATGTGATTCCATGCGTGAGTTGCCGAGGGAAATTGGACGACTTAAACAGTTAAGGTTGTTAGATACGACAGACTGTCGGAAACTTGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

630

Amino Acids

71.62

Weight (kDa)

6.53

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 151 - 313 2.4e-34 NB-ARC domain
LRR_14 PF23598 540 - 625 6.6e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AasI GACNNNNNNGTC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 1745
AccII CGCG 1 cut(s) 1392
AciI CCGC 1 cut(s) 1705
AclWI GGATC 5 cut(s) 625, 727, 740, 944, 1415
AcoI YGGCCR 2 cut(s) 1318, 1466
AcsI RAATTY 3 cut(s) 665, 1471, 1771
AcuI CTGAAG 3 cut(s) 326, 1649, 1715
AfaI GTAC 1 cut(s) 492
AhdI GACNNNNNGTC 1 cut(s) 1869
AjiI CACGTC 1 cut(s) 1743
AjnI CCWGG 2 cut(s) 1105, 1172
Alw21I GWGCWC 2 cut(s) 697, 918
Alw26I GTCTC 2 cut(s) 612, 706
AlwI GGATC 5 cut(s) 625, 727, 740, 944, 1415
AoxI GGCC 3 cut(s) 375, 1318, 1466
ApeKI GCWGC 2 cut(s) 167, 1078
ApoI RAATTY 3 cut(s) 665, 1471, 1771
Asp700I GAANNNNTTC 1 cut(s) 339
AspA2I CCTAGG 1 cut(s) 1666
AspS9I GGNCC 2 cut(s) 376, 1707
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 6 cut(s) 125, 194, 384, 475, 553, 947
AvaII GGWCC 1 cut(s) 1707
AvrII CCTAGG 1 cut(s) 1666
BalI TGGCCA 2 cut(s) 1320, 1468
BamHI GGATCC 1 cut(s) 732
BanII GRGCYC 2 cut(s) 687, 918
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 1668
Bbv12I GWGCWC 2 cut(s) 697, 918
BbvCI CCTCAGC 1 cut(s) 1784
BbvI GCAGC 2 cut(s) 154, 1065
BccI CCATC 8 cut(s) 137, 291, 387, 853, 1508, 1564, 1715, 1730
BciT130I CCWGG 2 cut(s) 1107, 1174
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 612, 706
BfaI CTAG 6 cut(s) 572, 1034, 1131, 1667, 1685, 1718
BfmI CTRYAG 2 cut(s) 780, 1562
BisI GCNGC 2 cut(s) 168, 1079
BlnI CCTAGG 1 cut(s) 1666
BlsI GCNGC 2 cut(s) 169, 1080
Bme1390I CCNGG 3 cut(s) 687, 1107, 1174
Bme18I GGWCC 1 cut(s) 1707
BmeRI GACNNNNNGTC 1 cut(s) 1869
BmgBI CACGTC 1 cut(s) 1743
BmgT120I GGNCC 2 cut(s) 376, 1707
BmiI GGNNCC 1 cut(s) 734
BmrFI CCNGG 3 cut(s) 687, 1107, 1174
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 4 cut(s) 154, 1054, 1279, 1438
BmuI ACTGGG 1 cut(s) 1088
BpiI GAAGAC 1 cut(s) 1668
BpmI CTGGAG 1 cut(s) 1128
Bpu10I CCTNAGC 1 cut(s) 1784
BpuEI CTTGAG 2 cut(s) 325, 1574
BpuMI CCSGG 1 cut(s) 687
Bsa29I ATCGAT 1 cut(s) 295
BsaAI YACGTR 1 cut(s) 707
BsaJI CCNNGG 4 cut(s) 42, 1105, 1666, 1820
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bse1I ACTGG 2 cut(s) 634, 1094
BseBI CCWGG 2 cut(s) 1107, 1174
BseCI ATCGAT 1 cut(s) 295
BseDI CCNNGG 4 cut(s) 42, 1105, 1666, 1820
BseGI GGATG 6 cut(s) 268, 379, 633, 864, 1066, 1101
BseMII CTCAG 1 cut(s) 1798
BseNI ACTGG 2 cut(s) 634, 1094
BseRI GAGGAG 1 cut(s) 686
BseXI GCAGC 2 cut(s) 154, 1065
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 1392
BshFI GGCC 3 cut(s) 377, 1320, 1468
BshVI ATCGAT 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 697, 918
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 1 cut(s) 869
BsmAI GTCTC 2 cut(s) 612, 706
BsmFI GGGAC 1 cut(s) 869
BsnI GGCC 3 cut(s) 377, 1320, 1468
Bsp1286I GDGCHC 3 cut(s) 687, 697, 918
Bsp143I GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
Bsp68I TCGCGA 1 cut(s) 1392
BspACI CCGC 1 cut(s) 1705
BspANI GGCC 3 cut(s) 377, 1320, 1468
BspCNI CTCAG 1 cut(s) 1797
BspDI ATCGAT 1 cut(s) 295
BspFNI CGCG 1 cut(s) 1392
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 1 cut(s) 734
BspPI GGATC 5 cut(s) 625, 727, 740, 944, 1415
BspQI GCTCTTC 1 cut(s) 685
BsrI ACTGG 2 cut(s) 634, 1094
BssECI CCNNGG 4 cut(s) 42, 1105, 1666, 1820
BssMI GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
BssSI CACGAG 1 cut(s) 834
BssT1I CCWWGG 2 cut(s) 42, 1666
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 1107, 1174
Bst4CI ACNGT 4 cut(s) 604, 1021, 1845, 1871
Bst6I CTCTTC 2 cut(s) 473, 685
BstBAI YACGTR 1 cut(s) 707
BstDEI CTNAG 2 cut(s) 107, 1784
BstF5I GGATG 6 cut(s) 268, 379, 633, 864, 1066, 1101
BstFNI CGCG 1 cut(s) 1392
BstKTI GATC 7 cut(s) 501, 633, 735, 805, 952, 1423, 1682
BstMAI GTCTC 2 cut(s) 612, 706
BstMBI GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
BstMWI GCNNNNNNNGC 2 cut(s) 383, 1816
BstNI CCWGG 2 cut(s) 1107, 1174
BstSCI CCNGG 3 cut(s) 685, 1105, 1172
BstSFI CTRYAG 2 cut(s) 780, 1562
BstUI CGCG 1 cut(s) 1392
BstV1I GCAGC 2 cut(s) 154, 1065
BstV2I GAAGAC 1 cut(s) 1668
BstX2I RGATCY 2 cut(s) 732, 1420
BstXI CCANNNNNNTGG 1 cut(s) 402
BstYI RGATCY 2 cut(s) 732, 1420
Bsu15I ATCGAT 1 cut(s) 295
BsuRI GGCC 3 cut(s) 377, 1320, 1468
BsuTUI ATCGAT 1 cut(s) 295
BtgZI GCGATG 3 cut(s) 298, 1407, 1631
BtrI CACGTC 1 cut(s) 1743
BtsCI GGATG 6 cut(s) 268, 379, 633, 864, 1066, 1101
BtsIMutI CAGTG 1 cut(s) 1101
BtuMI TCGCGA 1 cut(s) 1392
CciI TCATGA 1 cut(s) 805
Cfr13I GGNCC 2 cut(s) 376, 1707
ClaI ATCGAT 1 cut(s) 295
Csp6I GTAC 1 cut(s) 491
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 2 cut(s) 107, 1784
DpnI GATC 7 cut(s) 500, 632, 734, 804, 951, 1422, 1681
DpnII GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
DrdI GACNNNNNNGTC 1 cut(s) 236
DriI GACNNNNNGTC 1 cut(s) 1869
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 2 cut(s) 1318, 1466
Eam1104I CTCTTC 2 cut(s) 473, 685
Eam1105I GACNNNNNGTC 1 cut(s) 1869
EarI CTCTTC 2 cut(s) 473, 685
Ecl136II GAGCTC 1 cut(s) 916
Eco130I CCWWGG 2 cut(s) 42, 1666
Eco24I GRGCYC 2 cut(s) 687, 918
Eco47I GGWCC 1 cut(s) 1707
Eco53kI GAGCTC 1 cut(s) 916
Eco57I CTGAAG 3 cut(s) 326, 1649, 1715
EcoICRI GAGCTC 1 cut(s) 916
EcoRII CCWGG 2 cut(s) 1105, 1172
EcoT14I CCWWGG 2 cut(s) 42, 1666
EcoT22I ATGCAT 1 cut(s) 1380
EcoT38I GRGCYC 2 cut(s) 687, 918
ErhI CCWWGG 2 cut(s) 42, 1666
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 869
FauNDI CATATG 2 cut(s) 1403, 1483
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 1 cut(s) 1745
Fnu4HI GCNGC 2 cut(s) 168, 1079
FokI GGATG 6 cut(s) 275, 366, 640, 871, 1073, 1088
FriOI GRGCYC 2 cut(s) 687, 918
Fsp4HI GCNGC 2 cut(s) 168, 1079
FspBI CTAG 6 cut(s) 572, 1034, 1131, 1667, 1685, 1718
GluI GCNGC 2 cut(s) 168, 1079
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 3 cut(s) 377, 1320, 1468
HapII CCGG 1 cut(s) 687
HincII GTYRAC 3 cut(s) 408, 828, 869
HindII GTYRAC 3 cut(s) 408, 828, 869
HindIII AAGCTT 1 cut(s) 125
HpaII CCGG 1 cut(s) 687
HphI GGTGA 6 cut(s) 125, 194, 384, 475, 553, 947
Hpy166II GTNNAC 7 cut(s) 226, 408, 828, 869, 1001, 1099, 1746
Hpy188I TCNGA 7 cut(s) 207, 312, 640, 682, 844, 1588, 1875
Hpy8I GTNNAC 7 cut(s) 226, 408, 828, 869, 1001, 1099, 1746
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 9 cut(s) 350, 399, 803, 952, 979, 1326, 1568, 1583, 1624
HpyCH4III ACNGT 4 cut(s) 604, 1021, 1845, 1871
HpyCH4IV ACGT 5 cut(s) 706, 961, 1383, 1579, 1742
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 1816
HpyF3I CTNAG 2 cut(s) 107, 1784
HpySE526I ACGT 5 cut(s) 706, 961, 1383, 1579, 1742
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 4 cut(s) 300, 351, 359, 913
Lsp1109I GCAGC 2 cut(s) 154, 1065
LweI GCATC 4 cut(s) 154, 1054, 1279, 1438
MaeI CTAG 6 cut(s) 572, 1034, 1131, 1667, 1685, 1718
MaeII ACGT 5 cut(s) 706, 961, 1383, 1579, 1742
MaeIII GTNAC 2 cut(s) 46, 1015
MalI GATC 7 cut(s) 500, 632, 734, 804, 951, 1422, 1681
MboI GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
MboII GAAGA 8 cut(s) 332, 490, 702, 914, 1220, 1298, 1673, 1708
MfeI CAATTG 3 cut(s) 18, 1011, 1224
MflI RGATCY 2 cut(s) 732, 1420
MhlI GDGCHC 3 cut(s) 687, 697, 918
MlsI TGGCCA 2 cut(s) 1320, 1468
MluNI TGGCCA 2 cut(s) 1320, 1468
MlyI GAGTC 4 cut(s) 47, 316, 708, 780
MmeI TCCRAC 5 cut(s) 117, 290, 618, 1003, 1853
Mox20I TGGCCA 2 cut(s) 1320, 1468
Mph1103I ATGCAT 1 cut(s) 1380
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 2 cut(s) 1320, 1468
MslI CAYNNNNRTG 1 cut(s) 539
Msp20I TGGCCA 2 cut(s) 1320, 1468
MspA1I CMGCKG 1 cut(s) 1078
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 3 cut(s) 687, 1107, 1174
MunI CAATTG 3 cut(s) 18, 1011, 1224
MvaI CCWGG 2 cut(s) 1107, 1174
MvnI CGCG 1 cut(s) 1392
MwoI GCNNNNNNNGC 2 cut(s) 383, 1816
NciI CCSGG 1 cut(s) 687
NdeI CATATG 2 cut(s) 1403, 1483
NdeII GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
NlaIV GGNNCC 1 cut(s) 734
NmeAIII GCCGAG 1 cut(s) 1845
NmuCI GTSAC 1 cut(s) 46
NruI TCGCGA 1 cut(s) 1392
NsiI ATGCAT 1 cut(s) 1380
PagI TCATGA 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 1389
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 8 cut(s) 677, 839, 905, 938, 1237, 1525, 1699, 1802
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 169, 1080
PleI GAGTC 4 cut(s) 46, 315, 708, 780
PpsI GAGTC 4 cut(s) 46, 315, 708, 780
Ppu21I YACGTR 1 cut(s) 707
PsiI TTATAA 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 918
Psp6I CCWGG 2 cut(s) 1105, 1172
PspGI CCWGG 2 cut(s) 1105, 1172
PspN4I GGNNCC 1 cut(s) 734
PspPI GGNCC 2 cut(s) 376, 1707
PsuI RGATCY 2 cut(s) 732, 1420
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 1078
RruI TCGCGA 1 cut(s) 1392
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 918
SapI GCTCTTC 1 cut(s) 685
SatI GCNGC 2 cut(s) 168, 1079
Sau3AI GATC 7 cut(s) 498, 630, 732, 802, 949, 1420, 1679
Sau96I GGNCC 2 cut(s) 376, 1707
SchI GAGTC 4 cut(s) 47, 316, 708, 780
ScrFI CCNGG 3 cut(s) 687, 1107, 1174
SduI GDGCHC 3 cut(s) 687, 697, 918
SfaNI GCATC 4 cut(s) 154, 1054, 1279, 1438
SfcI CTRYAG 2 cut(s) 780, 1562
SinI GGWCC 1 cut(s) 1707
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 3 cut(s) 304, 1553, 1880
SmoI CTYRAG 3 cut(s) 304, 1553, 1880
SsiI CCGC 1 cut(s) 1705
SspMI CTAG 6 cut(s) 572, 1034, 1131, 1667, 1685, 1718
SstI GAGCTC 1 cut(s) 918
StyD4I CCNGG 3 cut(s) 685, 1105, 1172
StyI CCWWGG 2 cut(s) 42, 1666
TaaI ACNGT 4 cut(s) 604, 1021, 1845, 1871
TaiI ACGT 5 cut(s) 709, 964, 1386, 1582, 1745
TaqI TCGA 5 cut(s) 295, 922, 1240, 1255, 1347
TfiI GAWTC 8 cut(s) 677, 839, 905, 938, 1237, 1525, 1699, 1802
TscAI CASTG 1 cut(s) 1101
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 167, 1078
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 5 cut(s) 279, 470, 822, 1182, 1634
TspRI CASTG 1 cut(s) 1101
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 1707
XapI RAATTY 3 cut(s) 665, 1471, 1771
XmaJI CCTAGG 1 cut(s) 1666
XmiI GTMKAC 1 cut(s) 1745
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 6 cut(s) 572, 1034, 1131, 1667, 1685, 1718
Zsp2I ATGCAT 1 cut(s) 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.