Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005548

Physical Location & Seq

Genomic Coordinates Forward (+)

6976910 .. 6977959

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACATGTGTGAATAGCGTGATAGAGGTTTTGAAGAATGAAGAAGTTAAAATAATTGGGATTTGTGGTATGGGGGGTGTGGATAAAACCACAGTGGTGAAAGAAATCATCATAAGATTGGCAGGATTGAAAGTATCCGATAATGTTGTGATGGCAGTTGTGTCCCAAAGCCAAAGCATTCGGAAGATTCAATCCGAAATTGCAGACGAGTTGGGATTTACATATGACAGGGAGGATAGCGAAACTAGAAGAGCATTAAGGCTCTACTTAAGACTCAAGCAAATAAATAAGATCCTGATTCTATTAGATGATGTGTGGACAGAGCTCGATTTTAAGGCTATTGGACTTCCTTATGGACCTCATAAAGAGTGCAAAGTTCTGTTGACCTCGCGAAACTTGGAAGTGTGCAATGCAATGGAAAGTCAACAAATTTTTACAATCCCAGTTTTAACACCAAAGGAATCATGGGAACTCTTCCGTGAAATCATAGGTAAACCCTTGGACTATCCTGATTTGGCCAAACGAGTCACAAAGAAGTGTGCAGGTTTACCTATTGCTATTTTAACTGTTGCGAAAGCACTAGAAAATAAGAGGAACATCTCTTCGATGAATGACAAAGTTTATTCAAGCATACAATGGAGTTATGATAGATTGGAGAGTGATGATGCGAAGAATTGCCTTTTGCTTTGTCCTTTATTTCTTGAAGATTATGATATTCCAATTGAGTATTTGGGTCGAGGGTATTTTGGTAACACTGATTCAGTGGAAGAAGCAAGAAATAGAGTGCATTATTTGGTTGACAAACTTCAAAGAAGGTTTTTGTTGCTAGATAGCAAATTGAAAGACCATACCAAGATGCATGACATAGTTCGTGATGTTGCCATACAAATTGCCTCAAGAGATCCACATAGATTTCTAATAAGATGTGACGCTGAAAAGAAAGGGTGGCCAAAGATGGGGTTACTTGATCCTCGCCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

328

Amino Acids

37.45

Weight (kDa)

8.02

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005548)

Species	Orthologous Gene IDs
malus_domestica	MD03G1081300.v1.1 MD11G1085800.v1.1 MD11G1086000.v1.1 MD11G1086600.v1.1 MD11G1087300.v1.1 MD11G1088400.v1.1 MD11G1089600.v1.1 MD11G1090100.v1.1
prunus_persica	Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025400_v2.0.a1 Prupe.2G027200_v2.0.a1 Prupe.2G029200_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.3G141500_v2.0.a1 Prupe.7G035000_v2.0.a1 Prupe.7G035600_v2.0.a1 Prupe.7G036900_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037700_v2.0.a1
pyrus_communis	pycom11g07400 pycom11g07460 pycom11g07480 pycom11g07490 pycom15g14960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	533
AccII	CGCG	1 cut(s)	391
AclWI	GGATC	3 cut(s)	286, 896, 962
AcoI	YGGCCR	2 cut(s)	516, 947
AcsI	RAATTY	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	956
AflII	CTTAAG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	7 cut(s)	34, 130, 191, 627, 704, 809, 841
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	3 cut(s)	286, 896, 962
AoxI	GGCC	2 cut(s)	516, 947
ApoI	RAATTY	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	356
BalI	TGGCCA	2 cut(s)	518, 949
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	2 cut(s)	145, 949
BciVI	GTATCC	1 cut(s)	145
BfaI	CTAG	3 cut(s)	246, 581, 827
BfrI	CTTAAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	2 cut(s)	655, 846
BmuI	ACTGGG	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	260, 880
BsaJI	CCNNGG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	956
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	2 cut(s)	415, 420
BseDI	CCNNGG	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	956
BseMI	GCAATG	2 cut(s)	415, 420
BseNI	ACTGG	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	518, 949
BsiHKAI	GWGCWC	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	518, 949
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	291, 901, 967
Bsp68I	TCGCGA	1 cut(s)	391
BspANI	GGCC	2 cut(s)	518, 949
BspFNI	CGCG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	3 cut(s)	286, 896, 962
BspQI	GCTCTTC	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	415, 420
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	291, 901, 967
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	94, 568
Bst6I	CTCTTC	3 cut(s)	244, 479, 607
BstAFI	CTTAAG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	391
BstKTI	GATC	3 cut(s)	294, 904, 970
BstMBI	GATC	3 cut(s)	291, 901, 967
BstNSI	RCATGY	1 cut(s)	9
BstUI	CGCG	1 cut(s)	391
BstX2I	RGATCY	2 cut(s)	291, 901
BstYI	RGATCY	2 cut(s)	291, 901
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	518, 949
BtsIMutI	CAGTG	3 cut(s)	99, 753, 768
BtuMI	TCGCGA	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	1 cut(s)	938
CviAII	CATG	3 cut(s)	6, 465, 860
CviJI	RGCY	6 cut(s)	171, 262, 325, 338, 518, 949
CviKI_1	RGCY	6 cut(s)	171, 262, 325, 338, 518, 949
DpnI	GATC	3 cut(s)	293, 903, 969
DpnII	GATC	3 cut(s)	291, 901, 967
EaeI	YGGCCR	2 cut(s)	516, 947
Eam1104I	CTCTTC	3 cut(s)	244, 479, 607
EarI	CTCTTC	3 cut(s)	244, 479, 607
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	3 cut(s)	9, 468, 863
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	3 cut(s)	5, 464, 859
FauNDI	CATATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	246, 581, 827
HaeIII	GGCC	2 cut(s)	518, 949
HgaI	GACGC	1 cut(s)	938
Hin1II	CATG	3 cut(s)	9, 468, 863
HincII	GTYRAC	3 cut(s)	384, 425, 799
HindII	GTYRAC	3 cut(s)	384, 425, 799
HinfI	GANTC	6 cut(s)	187, 273, 298, 461, 525, 758
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	6 cut(s)	318, 384, 425, 494, 548, 799
Hpy188I	TCNGA	3 cut(s)	139, 183, 196
Hpy188III	TCNNGA	6 cut(s)	295, 390, 509, 701, 872, 897
Hpy8I	GTNNAC	6 cut(s)	318, 384, 425, 494, 548, 799
HpyAV	CCTTC	1 cut(s)	807
HpyCH4III	ACNGT	2 cut(s)	94, 568
HpyCH4V	TGCA	7 cut(s)	203, 372, 408, 413, 542, 787, 859
Hsp92II	CATG	3 cut(s)	9, 468, 863
Kzo9I	GATC	3 cut(s)	291, 901, 967
LguI	GCTCTTC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	108, 214, 308, 456, 522, 528
LweI	GCATC	2 cut(s)	655, 846
MaeI	CTAG	3 cut(s)	246, 581, 827
MaeIII	GTNAC	4 cut(s)	526, 749, 926, 960
MalI	GATC	3 cut(s)	293, 903, 969
MboI	GATC	3 cut(s)	291, 901, 967
MboII	GAAGA	9 cut(s)	46, 53, 196, 261, 466, 594, 682, 716, 779
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	2 cut(s)	291, 901
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	2 cut(s)	518, 949
MluCI	AATT	8 cut(s)	54, 198, 429, 673, 720, 836, 888, 979
MluNI	TGGCCA	2 cut(s)	518, 949
MlyI	GAGTC	2 cut(s)	267, 534
MnlI	CCTC	8 cut(s)	19, 226, 369, 397, 585, 731, 904, 981
Mox20I	TGGCCA	2 cut(s)	518, 949
Mph1103I	ATGCAT	1 cut(s)	861
MscI	TGGCCA	2 cut(s)	518, 949
MseI	TTAA	7 cut(s)	48, 257, 269, 333, 449, 563, 978
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	2 cut(s)	518, 949
MspCI	CTTAAG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	1 cut(s)	391
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	3 cut(s)	291, 901, 967
NlaIII	CATG	3 cut(s)	9, 468, 863
NmuCI	GTSAC	2 cut(s)	526, 926
NruI	TCGCGA	1 cut(s)	391
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	1 cut(s)	9
OliI	CACNNNNGTG	1 cut(s)	95
PciI	ACATGT	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	244
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	4 cut(s)	187, 298, 461, 758
PleI	GAGTC	2 cut(s)	267, 533
PpsI	GAGTC	2 cut(s)	267, 533
PscI	ACATGT	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	291, 901
RruI	TCGCGA	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	7 cut(s)	48, 257, 269, 333, 449, 563, 978
Sau3AI	GATC	3 cut(s)	291, 901, 967
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	2 cut(s)	267, 534
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	8 cut(s)	30, 327, 361, 389, 493, 547, 553, 818
SfaNI	GCATC	2 cut(s)	655, 846
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	3 cut(s)	268, 275, 895
SmoI	CTYRAG	3 cut(s)	268, 275, 895
Sse9I	AATT	8 cut(s)	54, 198, 429, 673, 720, 836, 888, 979
SspMI	CTAG	3 cut(s)	246, 581, 827
SstI	GAGCTC	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	94, 568
TaqI	TCGA	3 cut(s)	327, 605, 736
TasI	AATT	8 cut(s)	54, 198, 429, 673, 720, 836, 888, 979
TfiI	GAWTC	4 cut(s)	187, 298, 461, 758
Tru1I	TTAA	7 cut(s)	48, 257, 269, 333, 449, 563, 978
Tru9I	TTAA	7 cut(s)	48, 257, 269, 333, 449, 563, 978
TscAI	CASTG	3 cut(s)	99, 760, 768
TseFI	GTSAC	2 cut(s)	526, 926
Tsp45I	GTSAC	2 cut(s)	526, 926
TspDTI	ATGAA	2 cut(s)	54, 623
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	3 cut(s)	99, 760, 768
Vha464I	CTTAAG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	429
XceI	RCATGY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XspI	CTAG	3 cut(s)	246, 581, 827
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.