MD11G1090100.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
7467122 .. 7473069
5948 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1090100.v1.1.491

Sequence Viewer

Length: 3834 bp
ATGGAAATTATAATTGCAATTGCCTCAAAAATTGGACAGTACTTGGTCAAACCGATAGGAAGAGAGTTTGGCTATTTGTTTAATTACCATTCCAACCTTGAAAGTCTTCAGGCCGAGACAAAAAAGCTTTTTGACAAGAAAAATGGAGTGCAGGGATTGGTAGATGCTGCCAAAAGGAACGGTCTAATCATCAAACCTGATGTTCAGAGTTGGCTACAGAATGTGAACGACGACATGGTCAAAAAAGTGTTGCAGTTTGAGGTTGAAATTAACAAGCGATGTGTGTGTCAATGGAGCCTGAGTCGGAAAGCCTATAAGATTAAACAAGAAGTTCTTCAGCTCCAAAACGAAGGAACATTTGAAAATGTGGCCCATCCTGCACCTCCACCAGCGATATGGTCAACATTCGAAAAAGGATTTAAGGATTTTCAGTCCAGAAAGGCAAACATGAATGAGGTGATAGAGGGTTTGAAGAGGGAAGAAGTACGTATGATCGGGATTTGTGGAATGGGGGGTGTGGGTAAAACCACAATGATAAAAGAAATCATGACAAGATTGGCAAAACTGAACCTGTTTGATAAAATTGTAATGGCAACTGTGTCTCAAAGTCCAAGTATTAGGACTATCCAGTCGGAAATTGCAGACGAAATAGGTTTGCAATTTAAGGAGGAATCTGAGTCCGGAAGAGCACGAAGGCTACATGGGAGACTCATGGGCATAGAGAGGATCCTGATTGTATTAGATGATGCATGGACAGAGCTTGGTTTTGCGGCTATAGGACTTCCTTACGGAGATGCTCATAAAGGGTGCAAAGTTTTGTTGACATCACGAGATTCGGACGTTTGCAACAGGATGGGAAGTCAACAAATTATTGCAGTCCCGATTTTAACAACAGAAGAATCAGAGGAGCTGTTTCGAGAAATGGTGGGTGAATCCTTTAATGATCCTGATTTACGTTCCACTGCAAAAGATGTATTGAAGGAATGTGGAGGTTTACCTATTGTAATTGTAACTGTTGGAAAAGCCCTAGAAAAGAAAAACAAGCATGAATGGGATGATGCCCTTAATCAGTTGCGAAATTCTACCCCAGTGAACATCCCTGGAGTGAATGACAAAGTTTATTCTAGCATAAAATGGAGTTATGATAGATTGGAGAGTGATGAAGCCAGGTCATGTCTTTTACTTTGTTGTTTATTTCCAGAAGATTATGATATTCCAATTGAGTACTTGGTTCGATATGGGTGGGGTCGAGAATATTTTAGCAGCAGCTTTACTTTGGAAGATGCAAGAAATAGAGTGCATTCTTTGGTTGGCCAACTAAAAAGAAGGTTTTTGTTGCTGGATAGTGGCAAGGGTAAGTATACAAAAAAAGTTCAGTATACGAAAATGCATGACATAGTTCGCGATGTTGCTATATCGATTGCTTCAAGAGATCCACATGGATTTCTGATAAGAAGTAATGCTGAAAATAATGGGTGGTCAAATTTAGCTACGTATGACCATTACACTACAATCTCACTTGTTGGCAAATTGGAGATTCCGGTTGGTTTGAAATGCCCAAAACTTGAGCTTCTACAGACGATGAAAGGACGTTTTTCAAAAGGTAGCATGGACATCATTTGTGATGCGATGAAAGAACTGAAGGTTTTAGCTTTGGTGGGAATGGAAATGGAAGACCTAGGCTCATCAAGATCACTAGGAGTACTGAAGAACCTGCGGACCTTGTGCCTAGATGGGTCTAAATTTGATGGCATGTCTACTGATGTTATTGGGAGTTTGGAGAATTTAGAAATCCTCAGCTTTCGGGATTGTCGTTCCATGCGTGAGTTGCCGAGGGAAATTGGACGACTTAAACAGTTAAGGTTGTTAGATACGACAGATTGCAGGAATCTTGAGGTGATTCCACGTGGTATCTTCTCCAGCTTATGTAGACTTGAAGAGTTGTATATGCTTAATAGCTTTACGAAATGGGAAATTGGAAGAGAAAGAGAAGAAAAGGGGATGGCAAGCATTTCTGAGGTGATGTCTCTGTCCGATCATTTGAAGGTTCTATCCATAAATATACCCAGTGTCATCCACTTGTTTCCAAAAGACATAGTCTTGAAAAGCCCGACAATAAGATTCGCTATATGCTTTGATACATGGGGAGGGCATATTTCGGAGATGAGTACTTATGCATTCGAAAATTGTTTGGAGATTAGTGAAAGTGATGCAAGGGAGTTGGAGAGTCAAGCAGTTAGACTTTTGTTGAAAAAATCTAAAAAATTGTATTTGCACAAAGTTAAGAATTTATCTGTCCTCACTGATTTAGACCATGAGGTATTTCAAGATTTGAATGATTTACGTCTTGTGGATTGTCCAAATACCGAGTATCTTGCAAATGGGACAAGTGCGACCCAGCTTCCGGATAGCTTTTTGACCAACCTAAGATTCCTTGAATTAGGAAGTTGTCGTGTCTTAAAATATGTCTTTTCACTATCAATAGCGAGAAACTTGGTACAACTCCAGGAATTAAATATTGGTGGATGTAATCAAATGGAAGAAATTGTGTCGAAGCAGGGGAGGGAACATGAGGAGGAAGCCGATATGATATCTTTCCATAAATTAACCAAATTGTATCTCTGGGATCTACAGAGTTTGGTTAATTTCTTCCAAGCCAAGAAGCTATACTCCAACCAAGAGGAAACAACGGCAAGGGTTGAGCATCAATCTGCAGGCATATTTGAAAAAGCAATATTTCCATCAAAGTGCATTTCATGGTTTCCAAGTTTAGAAGAGGTACAATTGAAGCATATGAAGTTTGAAGGCGTGCTATTTGATCTGAAAATCCATATGGTTATGGATGGGCAGACAACTCCAATATTTCCTCAGTTAAGTAAGTTGGATATATCCGGTGGTTCATTTACACACTTGTGGAAAAACATTCCGTTTGGATTTCAAGGCTTCCGAAATTTGAGAAATTTGAAAGTAGGTGGATGTCGTGGTCTAAAATATGTGTTCTCGCATTTAATTGCCCGAGAACTTTTGAATCTTGAAGAGGTAAAGATATCTGGATGTCCGGACATGGAAACTATAGTAAGAATCACAGAGGAAAATGAAGAAGAGGCGACAAAATACATGATTTTGTTTCCGAAACTGAACACATTTGAACTAGAAGACCTGCCTCGTCTCACAAGTCTTTGTCCAGAGGGATTTACATTTCTATGGTCATCCGCAAAAAATATGCACGTGAAAGAATGTGAAAATTTGAAGACATTGGGTGCTGTAATTCCACAAAGAAAGAAGTTAGAGAATAAGTCTGAGAAGGATTCAAGAGCAAACGCACACCGCTCCATTGAAATATTGCCACGTCCATTTAATTTGGAGGTTACACCAACTAATCTTGAGGACTCAAATGATGATGATAATCTCGAAAATCTTCTTGTCCACGACTGTGCATCATTGGAAGTGATTTTCCAACTCAAGGGACCAAAGCATGAAGAAAGTAGTCACTCCTTTGAAGCATTCAATAAATTGAGGTCCTTATGGTTATATAAGTTGCCAAGTTTAACGCGTCTTTGGGAGACGGGTAGTTCACAACAGATGTTCACAGGTAGCAGCTTCGGAAACTTGAAATCGTTGGAGGTCCATCGTTGCAACCAGTTGAAATACTTGTTTTCTTCGTCCATTGTCAAACTTCTTGTGAGTGTAGAGGACATAAGAGTTTATGACTGTGAGCAGATGGAAGAAATCGTTGCCGCAGAAGAAGAAACAGCTGAAATAATTACATTACCTAAAGTGAAGTCCATCAAGCTTATAAGGCTGCCAAAACTCAAGTATTTTTGTGGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1278

Amino Acids

145.48

Weight (kDa)

6.32

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 147 - 311 8.6e-34 NB-ARC domain
LRR_14 PF23598 544 - 687 1e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 799 - 885 2.2e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 908 - 1019 4.4e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1008 - 1086 4.8e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1135 - 1239 2e-21 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1194 - 1273 2.8e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 11, 3797
AasI GACNNNNNNGTC 2 cut(s) 236, 628
Acc36I ACCTGC 2 cut(s) 1722, 3168
AccBSI CCGCTC 1 cut(s) 3330
AccI GTMKAC 4 cut(s) 1361, 1379, 1757, 1930
AccII CGCG 2 cut(s) 1404, 3553
AccIII TCCGGA 3 cut(s) 680, 2404, 3058
AciI CCGC 5 cut(s) 770, 1717, 3213, 3328, 3738
AclWI GGATC 5 cut(s) 721, 734, 938, 1427, 2634
AcoI YGGCCR 1 cut(s) 1312
AcsI RAATTY 8 cut(s) 1078, 1483, 1742, 1783, 2287, 2950, 2959, 3244
AcuI CTGAAG 4 cut(s) 92, 320, 1661, 1727
AcvI CACGTG 2 cut(s) 1907, 3229
AfaI GTAC 7 cut(s) 41, 486, 1226, 1704, 2170, 2499, 2781
AfiI CCNNNNNNNGG 2 cut(s) 2404, 3463
AflIII ACRYGT 1 cut(s) 3551
AjiI CACGTC 1 cut(s) 3350
AjnI CCWGG 3 cut(s) 1099, 1166, 2505
AjuI GAANNNNNNNTTGG 4 cut(s) 2414, 2446, 2502, 2534
AleI CACNNNNGTG 2 cut(s) 2911, 3432
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 6 cut(s) 110, 606, 700, 2031, 3173, 3557
AlwI GGATC 5 cut(s) 721, 734, 938, 1427, 2634
Ama87I CYCGRG 1 cut(s) 3015
Aor13HI TCCGGA 3 cut(s) 680, 2404, 3058
AoxI GGCC 3 cut(s) 111, 369, 1312
ApeKI GCWGC 5 cut(s) 167, 1263, 1266, 3597, 3802
ApoI RAATTY 8 cut(s) 1078, 1483, 1742, 1783, 2287, 2950, 2959, 3244
Asp700I GAANNNNTTC 3 cut(s) 105, 333, 3417
AspA2I CCTAGG 1 cut(s) 1678
AspS9I GGNCC 5 cut(s) 370, 1719, 3467, 3519, 3625
AsuHPI GGTGA 4 cut(s) 469, 941, 1909, 2032
AsuII TTCGAA 2 cut(s) 408, 2181
AvaI CYCGRG 1 cut(s) 3015
AvaII GGWCC 4 cut(s) 1719, 3467, 3519, 3625
AvrII CCTAGG 1 cut(s) 1678
BalI TGGCCA 1 cut(s) 1314
BamHI GGATCC 1 cut(s) 726
BauI CACGAG 1 cut(s) 828
BbrPI CACGTG 2 cut(s) 1907, 3229
BbsI GAAGAC 4 cut(s) 98, 1680, 3162, 3257
Bbv12I GWGCWC 1 cut(s) 691
BbvCI CCTCAGC 1 cut(s) 1796
BbvI GCAGC 5 cut(s) 154, 1275, 1278, 3609, 3789
BceAI ACGGC 1 cut(s) 2706
BcgI CGANNNNNNTGC 2 cut(s) 2357, 2391
BciT130I CCWGG 3 cut(s) 1101, 1168, 2507
BcoDI GTCTC 6 cut(s) 110, 606, 700, 2031, 3173, 3557
BfaI CTAG 6 cut(s) 1028, 1125, 1679, 1697, 1730, 3152
BfmI CTRYAG 6 cut(s) 215, 774, 1574, 2630, 2712, 3072
BfuAI ACCTGC 2 cut(s) 1722, 3168
BisI GCNGC 7 cut(s) 168, 771, 1264, 1267, 3598, 3738, 3803
BlnI CCTAGG 1 cut(s) 1678
BlsI GCNGC 7 cut(s) 169, 772, 1265, 1268, 3599, 3739, 3804
BmcAI AGTACT 4 cut(s) 41, 1226, 1704, 2170
Bme1390I CCNGG 3 cut(s) 1101, 1168, 2507
Bme18I GGWCC 4 cut(s) 1719, 3467, 3519, 3625
BmeT110I CYCGRG 1 cut(s) 3015
BmgBI CACGTC 1 cut(s) 3350
BmgT120I GGNCC 5 cut(s) 370, 1719, 3467, 3519, 3625
BmiI GGNNCC 3 cut(s) 296, 728, 3468
BmrFI CCNGG 3 cut(s) 1101, 1168, 2507
BmrI ACTGGG 2 cut(s) 1082, 2061
BmsI GCATC 9 cut(s) 154, 736, 784, 1048, 1273, 1615, 2200, 2713, 3446
BmuI ACTGGG 2 cut(s) 1082, 2061
BpiI GAAGAC 4 cut(s) 98, 1680, 3162, 3257
BpmI CTGGAG 3 cut(s) 1122, 1903, 2489
Bpu10I CCTNAGC 1 cut(s) 1796
Bpu14I TTCGAA 2 cut(s) 408, 2181
BpuEI CTTGAG 5 cut(s) 1586, 1913, 3404, 3446, 3797
Bsa29I ATCGAT 1 cut(s) 1418
BsaAI YACGTR 4 cut(s) 488, 1494, 1907, 3229
BsaBI GATNNNNATC 1 cut(s) 3405
BsaJI CCNNGG 3 cut(s) 1099, 1678, 1832
BsaWI WCCGGW 5 cut(s) 680, 1540, 2404, 2891, 3058
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 2404, 3463
Bse1I ACTGG 4 cut(s) 628, 1088, 2067, 3640
Bse8I GATNNNNATC 1 cut(s) 3405
BseAI TCCGGA 3 cut(s) 680, 2404, 3058
BseBI CCWGG 3 cut(s) 1101, 1168, 2507
BseCI ATCGAT 1 cut(s) 1418
BseDI CCNNGG 3 cut(s) 1099, 1678, 1832
BseJI GATNNNNATC 1 cut(s) 3405
BseLI CCNNNNNNNGG 2 cut(s) 2404, 3463
BseMII CTCAG 6 cut(s) 290, 666, 1810, 2007, 2882, 3291
BseNI ACTGG 4 cut(s) 628, 1088, 2067, 3640
BseRI GAGGAG 2 cut(s) 920, 2588
BseXI GCAGC 5 cut(s) 154, 1275, 1278, 3609, 3789
BseYI CCCAGC 1 cut(s) 2397
BsgI GTGCAG 2 cut(s) 170, 363
Bsh1236I CGCG 2 cut(s) 1404, 3553
BshFI GGCC 3 cut(s) 113, 371, 1314
BshVI ATCGAT 1 cut(s) 1418
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 1 cut(s) 3015
BsiSI CCGG 5 cut(s) 681, 1541, 2405, 2892, 3059
BslFI GGGAC 3 cut(s) 863, 2398, 3480
BslI CCNNNNNNNGG 2 cut(s) 2404, 3463
BsmAI GTCTC 6 cut(s) 110, 606, 700, 2031, 3173, 3557
BsmBI CGTCTC 2 cut(s) 3173, 3557
BsmFI GGGAC 3 cut(s) 863, 2398, 3480
BsmI GAATGC 3 cut(s) 1300, 2177, 3503
BsnI GGCC 3 cut(s) 113, 371, 1314
BsoBI CYCGRG 1 cut(s) 3015
Bsp119I TTCGAA 2 cut(s) 408, 2181
Bsp1286I GDGCHC 1 cut(s) 691
Bsp13I TCCGGA 3 cut(s) 680, 2404, 3058
Bsp143I GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
Bsp68I TCGCGA 1 cut(s) 1404
BspACI CCGC 5 cut(s) 770, 1717, 3213, 3328, 3738
BspANI GGCC 3 cut(s) 113, 371, 1314
BspCNI CTCAG 6 cut(s) 291, 667, 1809, 2008, 2881, 3292
BspDI ATCGAT 1 cut(s) 1418
BspEI TCCGGA 3 cut(s) 680, 2404, 3058
BspFNI CGCG 2 cut(s) 1404, 3553
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 3 cut(s) 296, 728, 3468
BspMAI CTGCAG 1 cut(s) 2716
BspMI ACCTGC 2 cut(s) 1722, 3168
BspPI GGATC 5 cut(s) 721, 734, 938, 1427, 2634
BspQI GCTCTTC 1 cut(s) 679
BspT104I TTCGAA 2 cut(s) 408, 2181
BsrBI CCGCTC 1 cut(s) 3330
BsrI ACTGG 4 cut(s) 628, 1088, 2067, 3640
BssECI CCNNGG 3 cut(s) 1099, 1678, 1832
BssMI GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
BssNAI GTATAC 2 cut(s) 1362, 1380
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 1 cut(s) 1678
Bst1107I GTATAC 2 cut(s) 1362, 1380
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 3 cut(s) 1101, 1168, 2507
Bst4CI ACNGT 7 cut(s) 39, 182, 598, 1015, 1857, 3434, 3713
Bst6I CTCTTC 8 cut(s) 55, 467, 679, 1932, 1975, 2769, 3030, 3096
BstBAI YACGTR 4 cut(s) 488, 1494, 1907, 3229
BstBI TTCGAA 2 cut(s) 408, 2181
BstC8I GCNNGC 3 cut(s) 2008, 2716, 2810
BstDEI CTNAG 7 cut(s) 299, 675, 1796, 2016, 2426, 2868, 3300
BstFNI CGCG 2 cut(s) 1404, 3553
BstKTI GATC 8 cut(s) 495, 729, 946, 1435, 1694, 2038, 2629, 2821
BstMAI GTCTC 6 cut(s) 110, 606, 700, 2031, 3173, 3557
BstMBI GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
BstMWI GCNNNNNNNGC 3 cut(s) 377, 1828, 3799
BstNI CCWGG 3 cut(s) 1101, 1168, 2507
BstNSI RCATGY 1 cut(s) 1756
BstSCI CCNGG 3 cut(s) 1099, 1166, 2505
BstSFI CTRYAG 6 cut(s) 215, 774, 1574, 2630, 2712, 3072
BstSNI TACGTA 2 cut(s) 488, 1494
BstUI CGCG 2 cut(s) 1404, 3553
BstV1I GCAGC 5 cut(s) 154, 1275, 1278, 3609, 3789
BstV2I GAAGAC 4 cut(s) 98, 1680, 3162, 3257
BstX2I RGATCY 3 cut(s) 726, 1432, 2626
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 3 cut(s) 726, 1432, 2626
BstZ17I GTATAC 2 cut(s) 1362, 1380
Bsu15I ATCGAT 1 cut(s) 1418
BsuRI GGCC 3 cut(s) 113, 371, 1314
BsuTUI ATCGAT 1 cut(s) 1418
BtgZI GCGATG 3 cut(s) 292, 1419, 1643
BtrI CACGTC 1 cut(s) 3350
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 4 cut(s) 960, 1095, 2074, 2301
BtuMI TCGCGA 1 cut(s) 1404
BveI ACCTGC 2 cut(s) 1722, 3168
Cac8I GCNNGC 3 cut(s) 2008, 2716, 2810
CciI TCATGA 1 cut(s) 546
Cfr13I GGNCC 5 cut(s) 370, 1719, 3467, 3519, 3625
ClaI ATCGAT 1 cut(s) 1418
CseI GACGC 1 cut(s) 3542
Csp6I GTAC 7 cut(s) 40, 485, 1225, 1703, 2169, 2498, 2780
CviQI GTAC 7 cut(s) 40, 485, 1225, 1703, 2169, 2498, 2780
DdeI CTNAG 7 cut(s) 299, 675, 1796, 2016, 2426, 2868, 3300
DpnI GATC 8 cut(s) 494, 728, 945, 1434, 1693, 2037, 2628, 2820
DpnII GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
DrdI GACNNNNNNGTC 2 cut(s) 236, 628
DseDI GACNNNNNNGTC 2 cut(s) 236, 628
EaeI YGGCCR 1 cut(s) 1312
Eam1104I CTCTTC 8 cut(s) 55, 467, 679, 1932, 1975, 2769, 3030, 3096
EarI CTCTTC 8 cut(s) 55, 467, 679, 1932, 1975, 2769, 3030, 3096
Eco105I TACGTA 2 cut(s) 488, 1494
Eco130I CCWWGG 1 cut(s) 1678
Eco32I GATATC 2 cut(s) 2592, 3048
Eco47I GGWCC 4 cut(s) 1719, 3467, 3519, 3625
Eco57I CTGAAG 4 cut(s) 92, 320, 1661, 1727
Eco72I CACGTG 2 cut(s) 1907, 3229
Eco88I CYCGRG 1 cut(s) 3015
EcoO109I RGGNCCY 1 cut(s) 3519
EcoRII CCWGG 3 cut(s) 1099, 1166, 2505
EcoRV GATATC 2 cut(s) 2592, 3048
EcoT14I CCWWGG 1 cut(s) 1678
EcoT22I ATGCAT 3 cut(s) 751, 1392, 2179
ErhI CCWWGG 1 cut(s) 1678
Esp3I CGTCTC 2 cut(s) 3173, 3557
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 3 cut(s) 863, 2398, 3480
FauNDI CATATG 2 cut(s) 2793, 2832
FblI GTMKAC 4 cut(s) 1361, 1379, 1757, 1930
Fnu4HI GCNGC 7 cut(s) 168, 771, 1264, 1267, 3598, 3738, 3803
Fsp4HI GCNGC 7 cut(s) 168, 771, 1264, 1267, 3598, 3738, 3803
FspBI CTAG 6 cut(s) 1028, 1125, 1679, 1697, 1730, 3152
GluI GCNGC 7 cut(s) 168, 771, 1264, 1267, 3598, 3738, 3803
GsaI CCCAGC 1 cut(s) 2401
GsuI CTGGAG 3 cut(s) 1122, 1903, 2489
HaeIII GGCC 3 cut(s) 113, 371, 1314
HapII CCGG 5 cut(s) 681, 1541, 2405, 2892, 3059
HgaI GACGC 1 cut(s) 3542
HincII GTYRAC 3 cut(s) 402, 822, 863
HindII GTYRAC 3 cut(s) 402, 822, 863
HindIII AAGCTT 2 cut(s) 125, 3791
HpaII CCGG 5 cut(s) 681, 1541, 2405, 2892, 3059
HphI GGTGA 4 cut(s) 469, 941, 1909, 2032
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 8 cut(s) 344, 687, 973, 1320, 1636, 2038, 2798, 3298
HpyCH4III ACNGT 7 cut(s) 39, 182, 598, 1015, 1857, 3434, 3713
HpyCH4IV ACGT 9 cut(s) 487, 840, 955, 1493, 1591, 1906, 2344, 3228, 3349
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 1828, 3799
HpyF3I CTNAG 7 cut(s) 299, 675, 1796, 2016, 2426, 2868, 3300
HpySE526I ACGT 9 cut(s) 487, 840, 955, 1493, 1591, 1906, 2344, 3228, 3349
Kpn2I TCCGGA 3 cut(s) 680, 2404, 3058
Kzo9I GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
LguI GCTCTTC 1 cut(s) 679
LmnI GCTCC 4 cut(s) 294, 345, 907, 3335
Lsp1109I GCAGC 5 cut(s) 154, 1275, 1278, 3609, 3789
LweI GCATC 9 cut(s) 154, 736, 784, 1048, 1273, 1615, 2200, 2713, 3446
MaeI CTAG 6 cut(s) 1028, 1125, 1679, 1697, 1730, 3152
MaeII ACGT 9 cut(s) 487, 840, 955, 1493, 1591, 1906, 2344, 3228, 3349
MaeIII GTNAC 3 cut(s) 1009, 3367, 3488
MalI GATC 8 cut(s) 494, 728, 945, 1434, 1693, 2037, 2628, 2820
MbiI CCGCTC 1 cut(s) 3330
MboI GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
MfeI CAATTG 3 cut(s) 18, 1218, 2783
MflI RGATCY 3 cut(s) 726, 1432, 2626
MhlI GDGCHC 1 cut(s) 691
MlsI TGGCCA 1 cut(s) 1314
MluI ACGCGT 1 cut(s) 3551
MluNI TGGCCA 1 cut(s) 1314
MlyI GAGTC 5 cut(s) 310, 686, 702, 2236, 3383
MmeI TCCRAC 9 cut(s) 117, 284, 612, 997, 2202, 2697, 2862, 3481, 3600
Mox20I TGGCCA 1 cut(s) 1314
Mph1103I ATGCAT 3 cut(s) 751, 1392, 2179
MroI TCCGGA 3 cut(s) 680, 2404, 3058
MroXI GAANNNNTTC 3 cut(s) 105, 333, 3417
MscI TGGCCA 1 cut(s) 1314
MslI CAYNNNNRTG 4 cut(s) 2746, 2911, 3202, 3432
Msp20I TGGCCA 1 cut(s) 1314
MspA1I CMGCKG 1 cut(s) 3755
MspI CCGG 5 cut(s) 681, 1541, 2405, 2892, 3059
MspR9I CCNGG 3 cut(s) 1101, 1168, 2507
MunI CAATTG 3 cut(s) 18, 1218, 2783
Mva1269I GAATGC 3 cut(s) 1300, 2177, 3503
MvaI CCWGG 3 cut(s) 1101, 1168, 2507
MvnI CGCG 2 cut(s) 1404, 3553
MwoI GCNNNNNNNGC 3 cut(s) 377, 1828, 3799
NdeI CATATG 2 cut(s) 2793, 2832
NdeII GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
NlaIV GGNNCC 3 cut(s) 296, 728, 3468
NmeAIII GCCGAG 2 cut(s) 139, 1857
NmuCI GTSAC 1 cut(s) 3488
NruI TCGCGA 1 cut(s) 1404
NsiI ATGCAT 3 cut(s) 751, 1392, 2179
NspI RCATGY 1 cut(s) 1756
NspV TTCGAA 2 cut(s) 408, 2181
OliI CACNNNNGTG 2 cut(s) 2911, 3432
PagI TCATGA 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 679
PcsI WCGNNNNNNNCGW 2 cut(s) 1810, 1819
PctI GAATGC 3 cut(s) 1300, 2177, 3503
PdmI GAANNNNTTC 3 cut(s) 105, 333, 3417
PflFI GACNNNGTC 2 cut(s) 236, 2096
PfoI TCCNGGA 1 cut(s) 2505
PkrI GCNGC 7 cut(s) 169, 772, 1265, 1268, 3599, 3739, 3804
PleI GAGTC 5 cut(s) 309, 685, 702, 2235, 3383
PmaCI CACGTG 2 cut(s) 1907, 3229
PmlI CACGTG 2 cut(s) 1907, 3229
PpsI GAGTC 5 cut(s) 309, 685, 702, 2235, 3383
Ppu21I YACGTR 4 cut(s) 488, 1494, 1907, 3229
PpuMI RGGWCCY 1 cut(s) 3519
PsiI TTATAA 2 cut(s) 11, 3797
Psp5II RGGWCCY 1 cut(s) 3519
Psp6I CCWGG 3 cut(s) 1099, 1166, 2505
PspCI CACGTG 2 cut(s) 1907, 3229
PspFI CCCAGC 1 cut(s) 2397
PspGI CCWGG 3 cut(s) 1099, 1166, 2505
PspN4I GGNNCC 3 cut(s) 296, 728, 3468
PspPI GGNCC 5 cut(s) 370, 1719, 3467, 3519, 3625
PspPPI RGGWCCY 1 cut(s) 3519
PstI CTGCAG 1 cut(s) 2716
PsuI RGATCY 3 cut(s) 726, 1432, 2626
PsyI GACNNNGTC 2 cut(s) 236, 2096
PvuII CAGCTG 1 cut(s) 3755
RruI TCGCGA 1 cut(s) 1404
RsaI GTAC 7 cut(s) 41, 486, 1226, 1704, 2170, 2499, 2781
RsaNI GTAC 7 cut(s) 40, 485, 1225, 1703, 2169, 2498, 2780
RseI CAYNNNNRTG 4 cut(s) 2746, 2911, 3202, 3432
SapI GCTCTTC 1 cut(s) 679
SatI GCNGC 7 cut(s) 168, 771, 1264, 1267, 3598, 3738, 3803
Sau3AI GATC 8 cut(s) 492, 726, 943, 1432, 1691, 2035, 2626, 2818
Sau96I GGNCC 5 cut(s) 370, 1719, 3467, 3519, 3625
ScaI AGTACT 4 cut(s) 41, 1226, 1704, 2170
SchI GAGTC 5 cut(s) 310, 686, 702, 2236, 3383
ScrFI CCNGG 3 cut(s) 1101, 1168, 2507
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 9 cut(s) 154, 736, 784, 1048, 1273, 1615, 2200, 2713, 3446
SfcI CTRYAG 6 cut(s) 215, 774, 1574, 2630, 2712, 3072
SfuI TTCGAA 2 cut(s) 408, 2181
SinI GGWCC 4 cut(s) 1719, 3467, 3519, 3625
SmiMI CAYNNNNRTG 4 cut(s) 2746, 2911, 3202, 3432
SmlI CTYRAG 5 cut(s) 1565, 1892, 3383, 3461, 3812
SmoI CTYRAG 5 cut(s) 1565, 1892, 3383, 3461, 3812
SnaBI TACGTA 2 cut(s) 488, 1494
SsiI CCGC 5 cut(s) 770, 1717, 3213, 3328, 3738
SspI AATATT 5 cut(s) 1256, 2518, 2736, 2862, 3342
SspMI CTAG 6 cut(s) 1028, 1125, 1679, 1697, 1730, 3152
StyD4I CCNGG 3 cut(s) 1099, 1166, 2505
StyI CCWWGG 1 cut(s) 1678
TaaI ACNGT 7 cut(s) 39, 182, 598, 1015, 1857, 3434, 3713
TaiI ACGT 9 cut(s) 490, 843, 958, 1496, 1594, 1909, 2347, 3231, 3352
TaqI TCGA 8 cut(s) 408, 916, 1234, 1249, 1418, 2181, 2552, 3411
TatI WGTACW 4 cut(s) 39, 1224, 1702, 2168
TauI GCSGC 2 cut(s) 773, 3740
TscAI CASTG 4 cut(s) 967, 1095, 2074, 2308
TseFI GTSAC 1 cut(s) 3488
TseI GCWGC 5 cut(s) 167, 1263, 1266, 3597, 3802
Tsp45I GTSAC 1 cut(s) 3488
TspGWI ACGGA 2 cut(s) 804, 2916
TspRI CASTG 4 cut(s) 967, 1095, 2074, 2308
Tth111I GACNNNGTC 2 cut(s) 236, 2096
VpaK11BI GGWCC 4 cut(s) 1719, 3467, 3519, 3625
XapI RAATTY 8 cut(s) 1078, 1483, 1742, 1783, 2287, 2950, 2959, 3244
XceI RCATGY 1 cut(s) 1756
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmaJI CCTAGG 1 cut(s) 1678
XmiI GTMKAC 4 cut(s) 1361, 1379, 1757, 1930
XmnI GAANNNNTTC 3 cut(s) 105, 333, 3417
XspI CTAG 6 cut(s) 1028, 1125, 1679, 1697, 1730, 3152
ZrmI AGTACT 4 cut(s) 41, 1226, 1704, 2170
Zsp2I ATGCAT 3 cut(s) 751, 1392, 2179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.