MD11G1089600.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
7428274 .. 7430278
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1089600.v1.1.491

Sequence Viewer

Length: 1932 bp
ATGGAAATTATAATTGCAATTGCCTCAAAAATTGGAGAGTCCTTGGTCACACCAATAGGAACAGAGTTTGGCTATTTGGTTAATTACCATTCCAACCTTGAAAGTCTTAGGGGTGAGATAAAAAAGCTTTTTGACAAGAAAGATGGAGTGCAGGGATTGGTAGATGCTGCCAAAAGGAACGGTGAAATCATCAAACCTGATGTTCAGAGTTGGCTAAAGAATGTGAACGACGACATGGTCAAAAAAGTGTTGCAGTTTGAGGATGAAATTAACAAGAAAAGGCGATGTGTGTATCGATGGAGCTTGAGTCGGAGAGCCTATAAGATTAAACAAGAAGTTCTTCAGCTCCAAAACGAAGGAAGATTTGAAAATGTGGCCCATCCTGCACCTCCACCAGAGATATGGTCAACATTTGAAAATGTTTTTAAGGATTTTAAGTCCAGAATGGCAAACATGAATGAGGTGATAGAGGGTTTGACGAGGGAAGAAGTACGACTGATTGGGATTTGTGGAATGGGGGGTGTGGGTAAAACCACAATGGTAAAAGAAATCATCACGAGATTGGCAAAACTGAACCTGTTTGATAAAATTGTAATGGCAACTGTGTCTCAAAGTCCAAGTATTAGGACGATCCAGTCGGAAATTGCAGAAGAAATAGGTTTGGAATTGAAGGAGGAATCCGAGTCCGGAAGAGCACGAAGGCTACATGGGAGACTCATGGAAATAAAGAGGATCCTGATTGTATTAGATGATGTCTGGGCAGAGCTTGATTTTAAGGCTATAGGACTCCCTTCTGGAGATGCTCATAAAGGGTGCAAAGTTTTGTTGACATCACGAGATTCGGACGTTTGCAACAGGATGCGAAGTCAACAAATTATTGCAGTCCCGATTTTAACAACAGAAGAATCACATGAGCTCTTTCGAGAAATGGTGGGTGAATCCTTTAATGATCCTGATTTACGTTCCACTGCAAAAGATGTATTAAAGGAATGTGGAGGTTTACCTATTGCAATTGTAACTGTTGGAAAAGCCCTAGAAAAGAAAAACAAACGTGAATGGGATGATGCCCTTAATCAGTTGCGAAATTCTACCCCAGTGAACATCCCTGGAGTGAATGACAAAGTTTATTCTAGCATAAAATGGAGTTATGATAGATTGGAGAGTGATGAAGCCAGGTTATGTCTTTTACTTTGTTGTTTATTTCCAGAAGACTATGATATTCCAATTGAATATTTGGTTCGATATGGGTGGGGTCGAGGATATTTTAGCAGCTGCGTTACTTTGGAAGATGCAAGAAATAGAGTGCATTCTTTGGTTGGCCAACTAAAAAGAAGGTTTTTGTTGCTAGATAGTGGCAAGAGTGAGGCTACAAAAATGCATGACGTAGTTCGTGATGTTGCCATATGGATTGCTTCAAGAGATGCACATGGATTTTTGATAAGAAGTGATGCTGAAAATAAAGGGTGGCCAAATTTAGCTACATATGACCATTACACTACAATCTCACTTGTTGGCGATTTGGAGATTCAAGATGGTTTGAAATGCCCAAAACTTGAGCTTCTACAGACGATGGAAGGACTTTTTTCAGAAGGTAGCATGGACAACATTTGTAAGGCGATGAAAGAACTGAAGGTTTTAGCTTTGGTGCAAATGAAAAACCGAGGCTCATCAAGCTCACTAGGATTACTGAAGAACCTGCGGACCTTGACCCTAAATGGGTCTAAATTTGATGGCATGTCTACTGATGTTATTGGGAGTTTGGAGAATTTAGAAATCCTCAGCTTTCGGGATTGTGATTCCATGCGTGAGTTGCCGAGGGAAATTGGACGACTTAAACAGTTGAGGTTGTTAGATACGACAAACTGCAGGAATCTTGAGGTGATTCCACATGAGGAAGAGAAGATAAGGGGATGGCAAGTATTTCTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

644

Amino Acids

73.0

Weight (kDa)

6.61

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 150 - 313 5.2e-37 NB-ARC domain
AAA_22 PF13401 165 - 252 2e-06 AAA domain
LRR_14 PF23598 540 - 624 3.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AasI GACNNNNNNGTC 2 cut(s) 236, 634
Acc36I ACCTGC 1 cut(s) 1704
AccI GTMKAC 1 cut(s) 1739
AccIII TCCGGA 1 cut(s) 686
AciI CCGC 1 cut(s) 1699
AclWI GGATC 4 cut(s) 625, 727, 740, 944
AcoI YGGCCR 2 cut(s) 1318, 1466
AcsI RAATTY 4 cut(s) 1084, 1471, 1724, 1765
AcuI CTGAAG 3 cut(s) 326, 1649, 1709
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 1 cut(s) 1716
AgsI TTSAA 8 cut(s) 101, 368, 416, 670, 1229, 1416, 1529, 1540
AjnI CCWGG 2 cut(s) 1105, 1172
Alw21I GWGCWC 2 cut(s) 697, 918
Alw26I GTCTC 2 cut(s) 612, 706
AlwI GGATC 4 cut(s) 625, 727, 740, 944
Aor13HI TCCGGA 1 cut(s) 686
AoxI GGCC 3 cut(s) 375, 1318, 1466
ApeKI GCWGC 3 cut(s) 167, 1269, 1272
ApoI RAATTY 4 cut(s) 1084, 1471, 1724, 1765
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 376, 1701
AsuHPI GGTGA 5 cut(s) 125, 194, 475, 947, 1891
AvaII GGWCC 1 cut(s) 1701
BalI TGGCCA 2 cut(s) 1320, 1468
BamHI GGATCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 918
BauI CACGAG 2 cut(s) 556, 834
BbsI GAAGAC 1 cut(s) 1215
Bbv12I GWGCWC 2 cut(s) 697, 918
BbvCI CCTCAGC 1 cut(s) 1778
BbvI GCAGC 3 cut(s) 154, 1259, 1281
BccI CCATC 7 cut(s) 137, 291, 387, 1526, 1564, 1724, 1905
BciT130I CCWGG 2 cut(s) 1107, 1174
BcoDI GTCTC 2 cut(s) 612, 706
BfaI CTAG 4 cut(s) 1034, 1131, 1346, 1679
BfmI CTRYAG 3 cut(s) 780, 1562, 1864
BfuAI ACCTGC 1 cut(s) 1704
BisI GCNGC 3 cut(s) 168, 1270, 1273
BlsI GCNGC 3 cut(s) 169, 1271, 1274
Bme1390I CCNGG 2 cut(s) 1107, 1174
Bme18I GGWCC 1 cut(s) 1701
BmgT120I GGNCC 2 cut(s) 376, 1701
BmiI GGNNCC 1 cut(s) 734
BmrFI CCNGG 2 cut(s) 1107, 1174
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 7 cut(s) 154, 790, 849, 1054, 1279, 1411, 1438
BmuI ACTGGG 1 cut(s) 1088
BpiI GAAGAC 1 cut(s) 1215
BpmI CTGGAG 2 cut(s) 816, 1128
Bpu10I CCTNAGC 1 cut(s) 1778
BpuEI CTTGAG 3 cut(s) 325, 1574, 1895
Bsa29I ATCGAT 1 cut(s) 295
BsaJI CCNNGG 4 cut(s) 42, 1105, 1660, 1814
BsaWI WCCGGW 1 cut(s) 686
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 1716
Bse1I ACTGG 2 cut(s) 634, 1094
BseAI TCCGGA 1 cut(s) 686
BseBI CCWGG 2 cut(s) 1107, 1174
BseCI ATCGAT 1 cut(s) 295
BseDI CCNNGG 4 cut(s) 42, 1105, 1660, 1814
BseGI GGATG 6 cut(s) 268, 379, 864, 1066, 1101, 1916
BseLI CCNNNNNNNGG 1 cut(s) 1716
BseMII CTCAG 2 cut(s) 1792, 1916
BseNI ACTGG 2 cut(s) 634, 1094
BseXI GCAGC 3 cut(s) 154, 1259, 1281
BsgI GTGCAG 2 cut(s) 170, 369
BshFI GGCC 3 cut(s) 377, 1320, 1468
BshVI ATCGAT 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 697, 918
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 1 cut(s) 1716
BsmAI GTCTC 2 cut(s) 612, 706
BsmFI GGGAC 1 cut(s) 869
BsmI GAATGC 1 cut(s) 1306
BsnI GGCC 3 cut(s) 377, 1320, 1468
Bsp1286I GDGCHC 2 cut(s) 697, 918
Bsp13I TCCGGA 1 cut(s) 686
Bsp143I GATC 3 cut(s) 630, 732, 949
BspACI CCGC 1 cut(s) 1699
BspANI GGCC 3 cut(s) 377, 1320, 1468
BspCNI CTCAG 2 cut(s) 1791, 1917
BspDI ATCGAT 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 686
BspLI GGNNCC 1 cut(s) 734
BspMAI CTGCAG 1 cut(s) 1868
BspMI ACCTGC 1 cut(s) 1704
BspPI GGATC 4 cut(s) 625, 727, 740, 944
BspQI GCTCTTC 1 cut(s) 685
BsrI ACTGG 2 cut(s) 634, 1094
BssECI CCNNGG 4 cut(s) 42, 1105, 1660, 1814
BssMI GATC 3 cut(s) 630, 732, 949
BssSI CACGAG 2 cut(s) 556, 834
BssT1I CCWWGG 1 cut(s) 42
Bst2BI CACGAG 2 cut(s) 556, 834
Bst2UI CCWGG 2 cut(s) 1107, 1174
Bst4CI ACNGT 4 cut(s) 182, 604, 1021, 1839
Bst6I CTCTTC 2 cut(s) 685, 1890
BstDEI CTNAG 3 cut(s) 107, 1778, 1925
BstF5I GGATG 6 cut(s) 268, 379, 864, 1066, 1101, 1916
BstKTI GATC 3 cut(s) 633, 735, 952
BstMAI GTCTC 2 cut(s) 612, 706
BstMBI GATC 3 cut(s) 630, 732, 949
BstMWI GCNNNNNNNGC 3 cut(s) 383, 1671, 1810
BstNI CCWGG 2 cut(s) 1107, 1174
BstNSI RCATGY 1 cut(s) 1738
BstSCI CCNGG 2 cut(s) 1105, 1172
BstSFI CTRYAG 3 cut(s) 780, 1562, 1864
BstV1I GCAGC 3 cut(s) 154, 1259, 1281
BstV2I GAAGAC 1 cut(s) 1215
BstX2I RGATCY 1 cut(s) 732
BstXI CCANNNNNNTGG 1 cut(s) 402
BstYI RGATCY 1 cut(s) 732
Bsu15I ATCGAT 1 cut(s) 295
BsuRI GGCC 3 cut(s) 377, 1320, 1468
BsuTUI ATCGAT 1 cut(s) 295
BtgZI GCGATG 2 cut(s) 298, 1631
BtsCI GGATG 6 cut(s) 268, 379, 864, 1066, 1101, 1916
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 2 cut(s) 966, 1101
BveI ACCTGC 1 cut(s) 1704
Cfr13I GGNCC 2 cut(s) 376, 1701
ClaI ATCGAT 1 cut(s) 295
Csp6I GTAC 1 cut(s) 491
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 3 cut(s) 107, 1778, 1925
DpnI GATC 3 cut(s) 632, 734, 951
DpnII GATC 3 cut(s) 630, 732, 949
DrdI GACNNNNNNGTC 2 cut(s) 236, 634
DseDI GACNNNNNNGTC 2 cut(s) 236, 634
EaeI YGGCCR 2 cut(s) 1318, 1466
Eam1104I CTCTTC 2 cut(s) 685, 1890
EarI CTCTTC 2 cut(s) 685, 1890
Ecl136II GAGCTC 1 cut(s) 916
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 1701
Eco53kI GAGCTC 1 cut(s) 916
Eco57I CTGAAG 3 cut(s) 326, 1649, 1709
EcoICRI GAGCTC 1 cut(s) 916
EcoRII CCWGG 2 cut(s) 1105, 1172
EcoT14I CCWWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 1380
EcoT38I GRGCYC 1 cut(s) 918
ErhI CCWWGG 1 cut(s) 42
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 869
FauNDI CATATG 2 cut(s) 1403, 1483
FblI GTMKAC 1 cut(s) 1739
Fnu4HI GCNGC 3 cut(s) 168, 1270, 1273
FokI GGATG 6 cut(s) 275, 366, 871, 1073, 1088, 1923
FriOI GRGCYC 1 cut(s) 918
Fsp4HI GCNGC 3 cut(s) 168, 1270, 1273
FspBI CTAG 4 cut(s) 1034, 1131, 1346, 1679
GluI GCNGC 3 cut(s) 168, 1270, 1273
GsuI CTGGAG 2 cut(s) 816, 1128
HaeIII GGCC 3 cut(s) 377, 1320, 1468
HapII CCGG 1 cut(s) 687
HincII GTYRAC 3 cut(s) 408, 828, 869
HindII GTYRAC 3 cut(s) 408, 828, 869
HindIII AAGCTT 1 cut(s) 125
HpaII CCGG 1 cut(s) 687
HphI GGTGA 5 cut(s) 125, 194, 475, 947, 1891
Hpy166II GTNNAC 7 cut(s) 226, 408, 828, 869, 1001, 1099, 1740
Hpy188I TCNGA 7 cut(s) 207, 312, 640, 682, 844, 1588, 1926
Hpy8I GTNNAC 7 cut(s) 226, 408, 828, 869, 1001, 1099, 1740
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 8 cut(s) 350, 664, 693, 801, 1326, 1568, 1583, 1624
HpyCH4III ACNGT 4 cut(s) 182, 604, 1021, 1839
HpyCH4IV ACGT 4 cut(s) 846, 961, 1051, 1383
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 1671, 1810
HpyF3I CTNAG 3 cut(s) 107, 1778, 1925
HpySE526I ACGT 4 cut(s) 846, 961, 1051, 1383
Kpn2I TCCGGA 1 cut(s) 686
Kzo9I GATC 3 cut(s) 630, 732, 949
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 2 cut(s) 300, 351
Lsp1109I GCAGC 3 cut(s) 154, 1259, 1281
LweI GCATC 7 cut(s) 154, 790, 849, 1054, 1279, 1411, 1438
MaeI CTAG 4 cut(s) 1034, 1131, 1346, 1679
MaeII ACGT 4 cut(s) 846, 961, 1051, 1383
MaeIII GTNAC 3 cut(s) 46, 1015, 1276
MalI GATC 3 cut(s) 632, 734, 951
MboI GATC 3 cut(s) 630, 732, 949
MfeI CAATTG 3 cut(s) 18, 1011, 1224
MflI RGATCY 1 cut(s) 732
MhlI GDGCHC 2 cut(s) 697, 918
MlsI TGGCCA 2 cut(s) 1320, 1468
MluNI TGGCCA 2 cut(s) 1320, 1468
MlyI GAGTC 5 cut(s) 47, 316, 692, 708, 780
MmeI TCCRAC 4 cut(s) 117, 290, 618, 1003
Mox20I TGGCCA 2 cut(s) 1320, 1468
Mph1103I ATGCAT 1 cut(s) 1380
MroI TCCGGA 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 2 cut(s) 1320, 1468
Msp20I TGGCCA 2 cut(s) 1320, 1468
MspA1I CMGCKG 1 cut(s) 1272
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 2 cut(s) 1107, 1174
MunI CAATTG 3 cut(s) 18, 1011, 1224
Mva1269I GAATGC 1 cut(s) 1306
MvaI CCWGG 2 cut(s) 1107, 1174
MwoI GCNNNNNNNGC 3 cut(s) 383, 1671, 1810
NdeI CATATG 2 cut(s) 1403, 1483
NdeII GATC 3 cut(s) 630, 732, 949
NlaIV GGNNCC 1 cut(s) 734
NmeAIII GCCGAG 1 cut(s) 1839
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 1380
NspI RCATGY 1 cut(s) 1738
PciSI GCTCTTC 1 cut(s) 685
PctI GAATGC 1 cut(s) 1306
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 8 cut(s) 677, 839, 905, 938, 1525, 1796, 1870, 1882
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 169, 1271, 1274
PleI GAGTC 5 cut(s) 46, 315, 691, 708, 780
PpsI GAGTC 5 cut(s) 46, 315, 691, 708, 780
PsiI TTATAA 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 918
Psp6I CCWGG 2 cut(s) 1105, 1172
PspGI CCWGG 2 cut(s) 1105, 1172
PspN4I GGNNCC 1 cut(s) 734
PspPI GGNCC 2 cut(s) 376, 1701
PstI CTGCAG 1 cut(s) 1868
PsuI RGATCY 1 cut(s) 732
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 1272
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SacI GAGCTC 1 cut(s) 918
SapI GCTCTTC 1 cut(s) 685
SatI GCNGC 3 cut(s) 168, 1270, 1273
Sau3AI GATC 3 cut(s) 630, 732, 949
Sau96I GGNCC 2 cut(s) 376, 1701
SchI GAGTC 5 cut(s) 47, 316, 692, 708, 780
ScrFI CCNGG 2 cut(s) 1107, 1174
SduI GDGCHC 2 cut(s) 697, 918
SfaNI GCATC 7 cut(s) 154, 790, 849, 1054, 1279, 1411, 1438
SfcI CTRYAG 3 cut(s) 780, 1562, 1864
SinI GGWCC 1 cut(s) 1701
SmlI CTYRAG 3 cut(s) 304, 1553, 1874
SmoI CTYRAG 3 cut(s) 304, 1553, 1874
SsiI CCGC 1 cut(s) 1699
SspI AATATT 1 cut(s) 1232
SspMI CTAG 4 cut(s) 1034, 1131, 1346, 1679
SstI GAGCTC 1 cut(s) 918
StyD4I CCNGG 2 cut(s) 1105, 1172
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 4 cut(s) 182, 604, 1021, 1839
TaiI ACGT 4 cut(s) 849, 964, 1054, 1386
TaqI TCGA 4 cut(s) 295, 922, 1240, 1255
TfiI GAWTC 8 cut(s) 677, 839, 905, 938, 1525, 1796, 1870, 1882
TscAI CASTG 2 cut(s) 973, 1101
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 167, 1269, 1272
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 5 cut(s) 279, 470, 1182, 1634, 1667
TspRI CASTG 2 cut(s) 973, 1101
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 1701
XapI RAATTY 4 cut(s) 1084, 1471, 1724, 1765
XceI RCATGY 1 cut(s) 1738
XcmI CCANNNNNNNNNTGG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 1739
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 4 cut(s) 1034, 1131, 1346, 1679
Zsp2I ATGCAT 1 cut(s) 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.