Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005548

Physical Location & Seq

Genomic Coordinates Forward (+)

5732249 .. 5732998

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCAGCGGACTTTCTAATTTCAATTGCCTCAAAAATTGGAGAGTGCCTGGTCACACCAATAGGAAGGGAGTGTGGCTATTTTGTTAATTACCATTCCAACCTTGAAAGTCTTCAGGGTGAGATAGAAGAGCTTTGTCACGAGAAAGATAGAGTGCAGGGATTGGTAGATGCTGCCAAAAGGAACGGTGAAATCATCAAACCTGATGTTCAGAGTTGGCTAAAGAATGTGAACGACGAGGTCAGAAAAGTGTTGCAGTTTGAGGATGAAATTAACAAGAAAAGGCGACGTATGAATCGATGGAGCTTGAGTCGGAAAGCCTATAAGATTAAACAAGATGTTCTTGTCCTCCAAATCAAGGTAACAAATGTGGTCGATCCTGCATCTCCACCAGAGATAAGGTCAACATGCGAAAAATATTTTAAGGATTTTAAGTCCAGAATGGCAAACATGAATGAGGTGATAGAGGGTTTGAAGGGGGAAGAAGTACGAATGATCGGGATTTGTGGAATGGGGGGTGTGGGTAAAACCACAATGGTGAAAGTAATCATCACAAGATTGGCAAAACTAGACTTGTTTGATAAAATTGTAATGGCAACTGTGTCTCAAAGTCCAAGTATTAAGATCGATCCAGTTGGACATTGCAGCACAAATAGGTTTGGAATTGAAGGAGGAATCCGAGTCCGGAAGAGCAGGAAGGCTACTTGCGAGACTCATGCATATAGAGAGGATCCTGATTGTGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

250

Amino Acids

28.19

Weight (kDa)

9.04

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	149 - 207	4.9e-08	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005548)

Species	Orthologous Gene IDs
malus_domestica	MD03G1081300.v1.1 MD11G1085800.v1.1 MD11G1086000.v1.1 MD11G1086600.v1.1 MD11G1087300.v1.1 MD11G1088400.v1.1 MD11G1089600.v1.1 MD11G1090100.v1.1
prunus_persica	Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025400_v2.0.a1 Prupe.2G027200_v2.0.a1 Prupe.2G029200_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.3G141500_v2.0.a1 Prupe.7G035000_v2.0.a1 Prupe.7G035600_v2.0.a1 Prupe.7G036900_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037700_v2.0.a1
pyrus_communis	pycom11g07400 pycom11g07460 pycom11g07480 pycom11g07490 pycom15g14960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	684
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	4 cut(s)	371, 623, 725, 738
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	24, 107, 475, 668
AjnI	CCWGG	1 cut(s)	48
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	2 cut(s)	133, 306
AluI	AGCT	2 cut(s)	133, 306
Alw26I	GTCTC	2 cut(s)	609, 704
AlwI	GGATC	4 cut(s)	371, 623, 725, 738
Aor13HI	TCCGGA	1 cut(s)	684
ApeKI	GCWGC	3 cut(s)	5, 173, 645
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuHPI	GGTGA	4 cut(s)	131, 200, 472, 550
BamHI	GGATCC	1 cut(s)	730
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	17, 160, 657
BccI	CCATC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	609, 704
BfaI	CTAG	1 cut(s)	569
BisI	GCNGC	3 cut(s)	6, 174, 646
BlsI	GCNGC	3 cut(s)	7, 175, 647
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	160, 392
BpiI	GAAGAC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	328
Bsa29I	ATCGAT	2 cut(s)	298, 627
BsaWI	WCCGGW	1 cut(s)	684
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	1 cut(s)	640
BseAI	TCCGGA	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	50
BseCI	ATCGAT	2 cut(s)	298, 627
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	640
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	17, 160, 657
BsgI	GTGCAG	1 cut(s)	176
BshVI	ATCGAT	2 cut(s)	298, 627
BsiSI	CCGG	1 cut(s)	685
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	609, 704
Bsp13I	TCCGGA	1 cut(s)	684
Bsp143I	GATC	5 cut(s)	376, 495, 624, 628, 730
BspACI	CCGC	1 cut(s)	8
BspDI	ATCGAT	2 cut(s)	298, 627
BspEI	TCCGGA	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	732
BspPI	GGATC	4 cut(s)	371, 623, 725, 738
BspQI	GCTCTTC	2 cut(s)	123, 683
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	632
BssMI	GATC	5 cut(s)	376, 495, 624, 628, 730
BssSI	CACGAG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	188, 601
Bst6I	CTCTTC	2 cut(s)	123, 683
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	379, 498, 627, 631, 733
BstMAI	GTCTC	2 cut(s)	609, 704
BstMBI	GATC	5 cut(s)	376, 495, 624, 628, 730
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	17, 160, 657
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
Bsu15I	ATCGAT	2 cut(s)	298, 627
BsuTUI	ATCGAT	2 cut(s)	298, 627
BtsCI	GGATG	1 cut(s)	271
ClaI	ATCGAT	2 cut(s)	298, 627
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	3 cut(s)	408, 451, 716
CviJI	RGCY	6 cut(s)	78, 133, 220, 306, 320, 701
CviKI_1	RGCY	6 cut(s)	78, 133, 220, 306, 320, 701
CviQI	GTAC	1 cut(s)	488
DpnI	GATC	5 cut(s)	378, 497, 626, 630, 732
DpnII	GATC	5 cut(s)	376, 495, 624, 628, 730
Eam1104I	CTCTTC	2 cut(s)	123, 683
EarI	CTCTTC	2 cut(s)	123, 683
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	721
FaeI	CATG	3 cut(s)	411, 454, 719
FaiI	YATR	7 cut(s)	293, 324, 409, 452, 717, 721, 723
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	3 cut(s)	407, 450, 715
Fnu4HI	GCNGC	3 cut(s)	6, 174, 646
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	6, 174, 646
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	3 cut(s)	6, 174, 646
HapII	CCGG	1 cut(s)	685
Hin1II	CATG	3 cut(s)	411, 454, 719
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	5 cut(s)	295, 310, 675, 681, 712
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	4 cut(s)	131, 200, 472, 550
Hpy166II	GTNNAC	2 cut(s)	232, 405
Hpy188I	TCNGA	4 cut(s)	213, 245, 315, 680
Hpy188III	TCNNGA	5 cut(s)	140, 438, 499, 685, 734
Hpy8I	GTNNAC	2 cut(s)	232, 405
Hpy99I	CGWCG	2 cut(s)	239, 291
HpyAV	CCTTC	4 cut(s)	60, 469, 662, 691
HpyCH4III	ACNGT	2 cut(s)	188, 601
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	5 cut(s)	157, 256, 383, 645, 719
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	411, 454, 719
Kpn2I	TCCGGA	1 cut(s)	684
Kzo9I	GATC	5 cut(s)	376, 495, 624, 628, 730
LguI	GCTCTTC	2 cut(s)	123, 683
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	3 cut(s)	17, 160, 657
LweI	GCATC	2 cut(s)	160, 392
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	3 cut(s)	52, 137, 361
MalI	GATC	5 cut(s)	378, 497, 626, 630, 732
MboI	GATC	5 cut(s)	376, 495, 624, 628, 730
MboII	GAAGA	4 cut(s)	104, 140, 494, 700
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	730
MluCI	AATT	7 cut(s)	18, 24, 36, 88, 270, 585, 663
MlyI	GAGTC	3 cut(s)	319, 690, 706
MmeI	TCCRAC	3 cut(s)	123, 293, 616
MnlI	CCTC	8 cut(s)	40, 232, 256, 359, 451, 460, 665, 721
Mph1103I	ATGCAT	1 cut(s)	721
MroI	TCCGGA	1 cut(s)	684
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	6 cut(s)	87, 273, 330, 423, 432, 621
MslI	CAYNNNNRTG	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	5 cut(s)	376, 495, 624, 628, 730
NlaIII	CATG	3 cut(s)	411, 454, 719
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	2 cut(s)	52, 137
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	1 cut(s)	411
OliI	CACNNNNGTG	1 cut(s)	536
PciSI	GCTCTTC	2 cut(s)	123, 683
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	295, 675
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	7, 175, 647
PleI	GAGTC	3 cut(s)	318, 689, 706
PpsI	GAGTC	3 cut(s)	318, 689, 706
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	732
PsuI	RGATCY	1 cut(s)	730
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	536
SapI	GCTCTTC	2 cut(s)	123, 683
SaqAI	TTAA	6 cut(s)	87, 273, 330, 423, 432, 621
SatI	GCNGC	3 cut(s)	6, 174, 646
Sau3AI	GATC	5 cut(s)	376, 495, 624, 628, 730
SchI	GAGTC	3 cut(s)	319, 690, 706
ScrFI	CCNGG	1 cut(s)	50
SfaNI	GCATC	2 cut(s)	160, 392
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	7 cut(s)	18, 24, 36, 88, 270, 585, 663
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	188, 601
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	3 cut(s)	298, 375, 627
TasI	AATT	7 cut(s)	18, 24, 36, 88, 270, 585, 663
TfiI	GAWTC	2 cut(s)	295, 675
Tru1I	TTAA	6 cut(s)	87, 273, 330, 423, 432, 621
Tru9I	TTAA	6 cut(s)	87, 273, 330, 423, 432, 621
TseFI	GTSAC	2 cut(s)	52, 137
TseI	GCWGC	3 cut(s)	5, 173, 645
Tsp45I	GTSAC	2 cut(s)	52, 137
TspDTI	ATGAA	3 cut(s)	282, 308, 467
Tth111I	GACNNNGTC	1 cut(s)	239
XceI	RCATGY	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.