Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Reverse (-)

42417533 .. 42418087

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1312000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCGCATCCTTGAAGTTGCAAACCGCAAATTTCGAGCTATCGAGATTGATATTGAGGACTTGTTCAGTCCCACGGAGACAGATCATGATCATGACATTCTGATGACTCAGAGGTTTGATGATGGACCAGAGAATATGGATGGTTCGGATCCACATCAGAAGATGCCTCCTGAAGTCAAGCGCTATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

64

Amino Acids

7.46

Weight (kDa)

4.66

Isoelectric Point (pI)

69.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	143, 156
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	143, 156
Aor51HI	AGCGCT	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	6, 183
AspS9I	GGNCC	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	148
BccI	CCATC	2 cut(s)	116, 134
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	2 cut(s)	15, 153
BsaBI	GATNNNNATC	2 cut(s)	87, 153
BsaJI	CCNNGG	1 cut(s)	72
Bse8I	GATNNNNATC	2 cut(s)	87, 153
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	6, 145
BseJI	GATNNNNATC	2 cut(s)	87, 153
BseMII	CTCAG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	82, 88, 148
BspACI	CCGC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	2 cut(s)	85, 91
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	143, 156
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	82, 88, 148
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	6, 145
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	6, 183
BstKTI	GATC	3 cut(s)	85, 91, 151
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	82, 88, 148
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	6, 145
CciI	TCATGA	2 cut(s)	85, 91
CfoI	GCGC	2 cut(s)	6, 183
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	2 cut(s)	86, 92
CviJI	RGCY	1 cut(s)	38
CviKI_1	RGCY	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	84, 90, 150
DpnII	GATC	3 cut(s)	82, 88, 148
Eco47I	GGWCC	1 cut(s)	125
Eco47III	AGCGCT	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	192
FaeI	CATG	2 cut(s)	89, 95
FaiI	YATR	3 cut(s)	87, 93, 137
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	2 cut(s)	85, 91
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	1 cut(s)	152
FspAI	RTGCGCAY	1 cut(s)	5
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 182
HaeII	RGCGCY	1 cut(s)	184
HhaI	GCGC	2 cut(s)	6, 183
Hin1II	CATG	2 cut(s)	89, 95
Hin6I	GCGC	2 cut(s)	4, 181
HinP1I	GCGC	2 cut(s)	4, 181
HinfI	GANTC	1 cut(s)	106
Hpy188I	TCNGA	4 cut(s)	102, 111, 148, 159
Hpy188III	TCNNGA	4 cut(s)	43, 86, 92, 170
HpyCH4V	TGCA	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	89, 95
HspAI	GCGC	2 cut(s)	4, 181
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	82, 88, 148
LpnPI	CCDG	2 cut(s)	141, 183
LweI	GCATC	2 cut(s)	15, 153
MalI	GATC	3 cut(s)	84, 90, 150
MboI	GATC	3 cut(s)	82, 88, 148
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	49, 105, 177
MslI	CAYNNNNRTG	2 cut(s)	90, 101
NdeII	GATC	3 cut(s)	82, 88, 148
NlaIII	CATG	2 cut(s)	89, 95
NlaIV	GGNNCC	1 cut(s)	150
NsbI	TGCGCA	1 cut(s)	5
PagI	TCATGA	2 cut(s)	85, 91
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	90, 101
Sau3AI	GATC	3 cut(s)	82, 88, 148
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	100
SetI	ASST	2 cut(s)	40, 116
SfaNI	GCATC	2 cut(s)	15, 153
SgeI	CNNG	9 cut(s)	23, 47, 55, 73, 85, 98, 104, 140, 182
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	90, 101
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	25
TaqI	TCGA	2 cut(s)	34, 42
TasI	AATT	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.