Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Forward (+)

33176311 .. 33176847

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAGCCTCGGCTTCATCTCCGCCGCCTCTTGATATCTTAGTTCGAGGGCACGAAGGCTTCTCACTCTGGAACGGACCCCCGTTCAGTATCAACGGCCAACCCGGAGTCAAGCTCGACAAAATCGCTTGCTCCGGTACCAAATTCGGTGACGATGGATCCGGGCTCATGTCCCCAATCTCACCGCCGCCGCCTTGTCCCCGCGTGGCACTTTTCTTCGGACTTTCCACAAGTCCTCAACGCCGCGTCTCCTCCGTCACCATGAAGGACCTCAACTTCTTCGACGCCGACAAAGCGCTAGCGAAGGAATTCCTCTCCAACTTTGCAGATGCGGTTGGGGAACCCAAATACATGAACATCCTTCAAGAAGTTGCAAATCGCAAAATTCGGGCAATCCAGATTGATCTCGAAGACTTGTTCAATTACCGAGATTTCGACGAAGAATTCCTCGGACGGGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

154

Amino Acids

16.84

Weight (kDa)

5.13

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_N	PF14551	101 - 142	2.4e-06	MCM N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	2 cut(s)	204, 246
AciI	CCGC	8 cut(s)	23, 26, 185, 188, 191, 202, 244, 332
AclWI	GGATC	2 cut(s)	153, 166
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	143, 308, 384, 443
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	139
AfeI	AGCGCT	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	365, 421
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	2 cut(s)	153, 166
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	4 cut(s)	143, 308, 384, 443
Asp700I	GAANNNNTTC	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	77, 268
AsuC2I	CCSGG	2 cut(s)	105, 163
AsuHPI	GGTGA	3 cut(s)	161, 174, 250
AsuNHI	GCTAGC	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	77, 268
BaeGI	GKGCMC	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	105, 163
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	5 cut(s)	6, 26, 188, 191, 244
BlsI	GCNGC	5 cut(s)	7, 27, 189, 192, 245
Bme1390I	CCNGG	2 cut(s)	105, 163
Bme18I	GGWCC	2 cut(s)	77, 268
BmgT120I	GGNCC	2 cut(s)	77, 268
BmiI	GGNNCC	4 cut(s)	79, 139, 160, 342
BmrFI	CCNGG	2 cut(s)	105, 163
BmsI	GCATC	1 cut(s)	319
BmtI	GCTAGC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
BpuMI	CCSGG	2 cut(s)	105, 163
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	9, 448
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	9, 448
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	204, 246
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	105, 135, 162
BslFI	GGGAC	2 cut(s)	157, 183
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	253
BsmBI	CGTCTC	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	157, 183
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	54, 168
Bsp143I	GATC	2 cut(s)	158, 403
BspACI	CCGC	8 cut(s)	23, 26, 185, 188, 191, 202, 244, 332
BspANI	GGCC	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	204, 246
BspLI	GGNNCC	4 cut(s)	79, 139, 160, 342
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	153, 166
BspT107I	GGYRCC	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	9, 448
BssMI	GATC	2 cut(s)	158, 403
BssNI	GRCGYC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	130, 300
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	2 cut(s)	204, 246
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	161, 406
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	158, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 293
BstSCI	CCNGG	2 cut(s)	103, 161
BstSLI	GKGCMC	1 cut(s)	54
BstUI	CGCG	2 cut(s)	204, 246
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	130, 300
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	77, 268
CseI	GACGC	2 cut(s)	235, 293
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	3 cut(s)	169, 262, 352
CviJI	RGCY	6 cut(s)	8, 14, 60, 99, 115, 166
CviKI_1	RGCY	6 cut(s)	8, 14, 60, 99, 115, 166
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	160, 405
DpnII	GATC	2 cut(s)	158, 403
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	77, 268
Eco47III	AGCGCT	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	2 cut(s)	308, 443
EcoRV	GATATC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	3 cut(s)	172, 265, 355
FaiI	YATR	3 cut(s)	170, 263, 353
FaqI	GGGAC	2 cut(s)	157, 183
FatI	CATG	3 cut(s)	168, 261, 351
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	5 cut(s)	6, 26, 188, 191, 244
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	6, 26, 188, 191, 244
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	5 cut(s)	6, 26, 188, 191, 244
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	3 cut(s)	105, 135, 162
HgaI	GACGC	2 cut(s)	235, 293
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	172, 265, 355
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	3 cut(s)	105, 135, 162
HphI	GGTGA	3 cut(s)	161, 174, 250
Hpy188I	TCNGA	2 cut(s)	221, 452
Hpy188III	TCNNGA	5 cut(s)	32, 70, 365, 397, 407
Hpy99I	CGWCG	2 cut(s)	287, 440
HpyAV	CCTTC	4 cut(s)	50, 259, 298, 371
HpyCH4V	TGCA	2 cut(s)	326, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 293
HpyF3I	CTNAG	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	172, 265, 355
HspAI	GCGC	1 cut(s)	296
KpnI	GGTACC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	158, 403
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	5 cut(s)	55, 118, 148, 175, 410
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	149, 256, 457
MalI	GATC	2 cut(s)	160, 405
MboI	GATC	2 cut(s)	158, 403
MboII	GAAGA	4 cut(s)	208, 271, 422, 452
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	54, 168
MluCI	AATT	5 cut(s)	143, 308, 384, 421, 443
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	19, 39, 41, 246, 262, 281, 323, 458
MroXI	GAANNNNTTC	1 cut(s)	308
MspI	CCGG	3 cut(s)	105, 135, 162
MspR9I	CCNGG	2 cut(s)	105, 163
MvnI	CGCG	2 cut(s)	204, 246
MwoI	GCNNNNNNNGC	2 cut(s)	11, 293
NciI	CCSGG	2 cut(s)	105, 163
NdeII	GATC	2 cut(s)	158, 403
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	172, 265, 355
NlaIV	GGNNCC	4 cut(s)	79, 139, 160, 342
NmuCI	GTSAC	2 cut(s)	149, 256
PdmI	GAANNNNTTC	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	7, 27, 189, 192, 245
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	4 cut(s)	79, 139, 160, 342
PspPI	GGNCC	2 cut(s)	77, 268
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SatI	GCNGC	5 cut(s)	6, 26, 188, 191, 244
Sau3AI	GATC	2 cut(s)	158, 403
Sau96I	GGNCC	2 cut(s)	77, 268
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	105, 163
SduI	GDGCHC	2 cut(s)	54, 168
SetI	ASST	2 cut(s)	117, 273
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	2 cut(s)	77, 268
Sse9I	AATT	5 cut(s)	143, 308, 384, 421, 443
SsiI	CCGC	8 cut(s)	23, 26, 185, 188, 191, 202, 244, 332
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	103, 161
TaqI	TCGA	5 cut(s)	46, 117, 282, 408, 435
TasI	AATT	5 cut(s)	143, 308, 384, 421, 443
TauI	GCSGC	4 cut(s)	28, 190, 193, 246
TseFI	GTSAC	2 cut(s)	149, 256
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	149, 256
TspDTI	ATGAA	3 cut(s)	6, 278, 368
TspGWI	ACGGA	2 cut(s)	90, 244
VpaK11BI	GGWCC	2 cut(s)	77, 268
XapI	RAATTY	4 cut(s)	143, 308, 384, 443
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.