Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8153082.1

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Reverse (-)

272 .. 653

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8153082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

tgttttcagcaagaagttgcaaatcgcaaaattcgggcaatccagattgatctcgaggacttgtttaattaccaggatttcgatgaagaatttctcagacgagttactgaaaacacccggcggtacgtgggtatttttgctgatgctattgatgagctcatgccgcagcccactgaggcctttacagatgatgatcatgacatcttgatgacacaaaggtctgatgatggacccgagaatatggatggttctgatccacatcagaagatgcctcctgaaatcaagcgctacttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

98

Amino Acids

11.61

Weight (kDa)

4.33

Isoelectric Point (pI)

63.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	217
AciI	CCGC	2 cut(s)	121, 164
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	30, 89
AfaI	GTAC	1 cut(s)	125
AfeI	AGCGCT	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	2 cut(s)	53, 233
Aor51HI	AGCGCT	1 cut(s)	287
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	30, 89
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	118
AvaI	CYCGRG	2 cut(s)	53, 233
AvaII	GGWCC	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	115, 148
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	221, 239
BciT130I	CCWGG	1 cut(s)	74
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	289
BisI	GCNGC	2 cut(s)	164, 167
BlsI	GCNGC	2 cut(s)	165, 168
Bme1390I	CCNGG	2 cut(s)	74, 118
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	2 cut(s)	53, 233
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	74, 118
BmsI	GCATC	2 cut(s)	133, 258
BpuMI	CCSGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	127
BsaBI	GATNNNNATC	2 cut(s)	192, 258
Bse8I	GATNNNNATC	2 cut(s)	192, 258
BseBI	CCWGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	2 cut(s)	192, 258
BseMII	CTCAG	2 cut(s)	109, 165
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	53, 233
BsiSI	CCGG	1 cut(s)	118
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	2 cut(s)	53, 233
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	49, 193, 253
BspACI	CCGC	2 cut(s)	121, 164
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	108, 166
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	248
BssMI	GATC	3 cut(s)	49, 193, 253
Bst2UI	CCWGG	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	95, 174
BstF5I	GGATG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	52, 196, 256
BstMBI	GATC	3 cut(s)	49, 193, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	72, 116
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	171
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	160, 197
CviJI	RGCY	3 cut(s)	157, 169, 179
CviKI_1	RGCY	3 cut(s)	157, 169, 179
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	95, 174
DpnI	GATC	3 cut(s)	51, 195, 255
DpnII	GATC	3 cut(s)	49, 193, 253
DrdI	GACNNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	230
Eco47III	AGCGCT	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	53, 233
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	163, 200
FaiI	YATR	3 cut(s)	161, 198, 242
FalI	AAGNNNNNCTT	1 cut(s)	275
FatI	CATG	2 cut(s)	159, 196
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	164, 167
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	164, 167
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	2 cut(s)	164, 167
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	163, 200
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	98, 223, 253, 264
Hpy188III	TCNNGA	5 cut(s)	43, 53, 197, 205, 275
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	95, 174
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	163, 200
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	49, 193, 253
LpnPI	CCDG	5 cut(s)	56, 59, 86, 131, 288
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	133, 258
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	3 cut(s)	51, 195, 255
MboI	GATC	3 cut(s)	49, 193, 253
MboII	GAAGA	2 cut(s)	98, 277
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	30, 67, 89
MnlI	CCTC	3 cut(s)	49, 169, 282
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	74, 118
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	49, 193, 253
NlaIII	CATG	2 cut(s)	163, 200
NlaIV	GGNNCC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	165, 168
Ppu21I	YACGTR	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	164, 167
Sau3AI	GATC	3 cut(s)	49, 193, 253
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	74, 118
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	3 cut(s)	129, 159, 221
SfaNI	GCATC	2 cut(s)	133, 258
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	30, 67, 89
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	121, 164
SstI	GAGCTC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	72, 116
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	54, 81
TasI	AATT	3 cut(s)	30, 67, 89
TauI	GCSGC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	30, 89
XhoI	CTCGAG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.