Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Forward (+)

38213218 .. 38215040

Gene Structure 1823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0344400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTCAACCAAATAATCCTACTAGCAATGACAGCAGAGATAGAAGATGGTCTCTTGAGGGAATGACTGCTCTTGTCACTGGGGGAACCAAAGGCATTGGATATGCTATTGTGGAGGAATTGGCAAGGCTAGGTGCAAAGGTCCATACTTGTTCCCGGAATGAAGTCCAACTCAATGAGCGGTTGAGTCAATGGAAGGCCAAGGGTTTTAATCAAGTCACTGGTTCTGTCTGTGATTTGGTCTCAAAGCCCCAACGAGAGGAGCTCATGAAGAAGGTCTCATCACTGTTCAATGGGAAACTAAACATCCTTGTAAACAATGTGGGAACCAATATAGCAAAGCCAACAACTGATATTACAGCTGAAGATTACTCATTTCTTATGGGAACCAATCTTGACTCTTATTACAATATGTGCCAACTTGCACATCCTCTCCTCAAAACATCAGGAGCTGGTAACATTGTTCTTATATCTTCTGTTGCTGGTGTGGTAACAGTTGGGGGGATTGGAAGTGTCTATGCTGCCACTAAAGGAGCAATTAACCAATTGGCAAGATACTTGGCGTGCGAGTGGGGAAAAGACAATATTAGAATCAACAGCGTTGCACCTTGGTTCATACGAACTCCCTTCGCCGAAGATATTCTCAGTAACCAAACGATGCTTGAGGCTATTAACTCTCGAACACCTTTACAACGCCCTGGCGAGCCGGAAGAGGTTTCTTCCTTGGTGGCGTTTCTGTGCTTGCCTGCTGCCTCATACATAACTGGGCAGACTATTTGCATTGACGGAGGGATGACTGTTAATGGCATAAGCTTACGCATTCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

276

Amino Acids

29.83

Weight (kDa)

7.56

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	21 - 265	2.3e-06	SDR-like rossmann domain
adh_short	PF00106	23 - 217	7e-47	short chain dehydrogenase
KR	PF08659	23 - 187	1.1e-09	KR domain
adh_short_C2	PF13561	31 - 266	1.9e-60	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	292, 824
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	4 cut(s)	265, 362, 452, 813
AluI	AGCT	4 cut(s)	265, 362, 452, 813
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	3 cut(s)	57, 247, 283
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	521, 749
Asp700I	GAANNNNTTC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	508, 736
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	3 cut(s)	57, 247, 283
BfaI	CTAG	3 cut(s)	24, 131, 829
BisI	GCNGC	2 cut(s)	522, 750
BlsI	GCNGC	2 cut(s)	523, 751
Bme1390I	CCNGG	2 cut(s)	157, 699
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	3 cut(s)	88, 328, 388
BmrFI	CCNGG	2 cut(s)	157, 699
BmrI	ACTGGG	2 cut(s)	90, 774
BmsI	GCATC	1 cut(s)	648
BmuI	ACTGGG	2 cut(s)	90, 774
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
BpuEI	CTTGAG	2 cut(s)	77, 683
BpuMI	CCSGG	1 cut(s)	157
BsaI	GGTCTC	3 cut(s)	57, 247, 283
BsaJI	CCNNGG	4 cut(s)	201, 608, 697, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	85, 226, 769
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	4 cut(s)	201, 608, 697, 723
BseGI	GGATG	3 cut(s)	306, 427, 798
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	658
BseNI	ACTGG	3 cut(s)	85, 226, 769
BseRI	GAGGAG	2 cut(s)	275, 425
BseXI	GCAGC	2 cut(s)	508, 736
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	157, 707
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	3 cut(s)	57, 247, 283
BsmI	GAATGC	1 cut(s)	819
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	3 cut(s)	57, 247, 283
Bsp1286I	GDGCHC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	657
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	88, 328, 388
BspTNI	GGTCTC	3 cut(s)	57, 247, 283
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	3 cut(s)	85, 226, 769
BssECI	CCNNGG	4 cut(s)	201, 608, 697, 723
BssT1I	CCWWGG	3 cut(s)	201, 608, 723
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	3 cut(s)	288, 496, 799
Bst6I	CTCTTC	1 cut(s)	705
BstC8I	GCNNGC	4 cut(s)	565, 704, 743, 747
BstDEI	CTNAG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	306, 427, 798
BstMAI	GTCTC	3 cut(s)	57, 247, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	155, 697
BstV1I	GCAGC	2 cut(s)	508, 736
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	3 cut(s)	306, 427, 798
BtsIMutI	CAGTG	3 cut(s)	78, 219, 284
Cac8I	GCNNGC	4 cut(s)	565, 704, 743, 747
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	644
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	3 cut(s)	201, 608, 723
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	3 cut(s)	57, 247, 283
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	3 cut(s)	201, 608, 723
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	3 cut(s)	201, 608, 723
FaeI	CATG	1 cut(s)	271
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	522, 750
FokI	GGATG	3 cut(s)	293, 414, 805
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	522, 750
FspBI	CTAG	3 cut(s)	24, 131, 829
GluI	GCNGC	2 cut(s)	522, 750
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	157, 707
Hin1II	CATG	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	3 cut(s)	187, 398, 591
HpaII	CCGG	2 cut(s)	157, 707
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	6 cut(s)	56, 268, 395, 447, 678, 824
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	190, 268, 637
HpyCH4III	ACNGT	3 cut(s)	288, 496, 799
HpyCH4V	TGCA	4 cut(s)	137, 425, 605, 780
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	644
Hsp92II	CATG	1 cut(s)	271
LmnI	GCTCC	3 cut(s)	262, 449, 533
Lsp1109I	GCAGC	2 cut(s)	508, 736
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	3 cut(s)	24, 131, 829
MaeIII	GTNAC	5 cut(s)	76, 217, 455, 490, 647
MbiI	CCGCTC	1 cut(s)	181
MboII	GAAGA	7 cut(s)	57, 283, 377, 465, 647, 711, 722
MfeI	CAATTG	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	119, 537, 545
MlyI	GAGTC	2 cut(s)	196, 392
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	9 cut(s)	52, 109, 253, 441, 446, 658, 706, 763, 782
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	4 cut(s)	210, 540, 672, 801
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	157, 707
MspR9I	CCNGG	2 cut(s)	157, 699
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	819
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	157
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	88, 328, 388
NmuCI	GTSAC	2 cut(s)	76, 217
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	819
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	591
PfoI	TCCNGGA	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	523, 751
PleI	GAGTC	2 cut(s)	195, 392
PpsI	GAGTC	2 cut(s)	195, 392
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	3 cut(s)	88, 328, 388
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	210, 540, 672, 801
SatI	GCNGC	2 cut(s)	522, 750
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	2 cut(s)	196, 392
ScrFI	CCNGG	2 cut(s)	157, 699
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	648
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	56, 662
SmoI	CTYRAG	2 cut(s)	56, 662
Sse9I	AATT	3 cut(s)	119, 537, 545
SsiI	CCGC	1 cut(s)	181
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	3 cut(s)	24, 131, 829
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	155, 697
StyI	CCWWGG	3 cut(s)	201, 608, 723
TaaI	ACNGT	3 cut(s)	288, 496, 799
TaqI	TCGA	1 cut(s)	679
TasI	AATT	3 cut(s)	119, 537, 545
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	4 cut(s)	210, 540, 672, 801
Tru9I	TTAA	4 cut(s)	210, 540, 672, 801
TscAI	CASTG	3 cut(s)	85, 226, 291
TseFI	GTSAC	2 cut(s)	76, 217
TseI	GCWGC	2 cut(s)	521, 749
Tsp45I	GTSAC	2 cut(s)	76, 217
TspDTI	ATGAA	3 cut(s)	177, 284, 604
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	3 cut(s)	85, 226, 291
VpaK11BI	GGWCC	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	3 cut(s)	24, 131, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.