Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Forward (+)

33184468 .. 33193973

Gene Structure 9506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCGGGAGGAATCGATCCTCATACTCACCTAGCCATGGAGTTCATGGTACAGAATCAAGATATTAAGGATTTCGGTTTGTCTACACGTGTTGAGTATCGATGGAGAGAAAGAAAGTTGGTTGTTGATCTCGAAGACTTGTTTAATTACCGAGATTTCGACGAAGAATTCCTCGGACGGGTTCTTGAAAACACCCGGCGGTATGTGGGTATTTTGCTGATGCTATTGATGAGCTCCCGCCGCAGCCACCGAGGCTTTTACAGGATGATGATCATGACATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

94

Amino Acids

11.37

Weight (kDa)

6.83

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	3 cut(s)	199, 238, 241
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	37, 178
AflIII	ACRYGT	2 cut(s)	86, 88
AgsI	TTSAA	1 cut(s)	188
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	196
BfaI	CTAG	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	241, 244
BlsI	GCNGC	2 cut(s)	242, 245
Bme1390I	CCNGG	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	196
Bsa29I	ATCGAT	2 cut(s)	15, 100
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	36, 172, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 178
Bse8I	GATNNNNATC	1 cut(s)	269
BseCI	ATCGAT	2 cut(s)	15, 100
BseDI	CCNNGG	3 cut(s)	36, 172, 250
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	37, 178
BseXI	GCAGC	1 cut(s)	255
BshVI	ATCGAT	2 cut(s)	15, 100
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	37, 178
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	16, 127, 270
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	3 cut(s)	199, 238, 241
BspDI	ATCGAT	2 cut(s)	15, 100
BspHI	TCATGA	1 cut(s)	273
BspPI	GGATC	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	36, 172, 250
BssMI	GATC	3 cut(s)	16, 127, 270
BssT1I	CCWWGG	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	19, 130, 273
BstMBI	GATC	3 cut(s)	16, 127, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 252
BstSCI	CCNGG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	141
Bsu15I	ATCGAT	2 cut(s)	15, 100
BsuTUI	ATCGAT	2 cut(s)	15, 100
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	273
ClaI	ATCGAT	2 cut(s)	15, 100
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	3 cut(s)	37, 46, 274
CviJI	RGCY	4 cut(s)	35, 234, 246, 255
CviKI_1	RGCY	4 cut(s)	35, 234, 246, 255
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	3 cut(s)	18, 129, 272
DpnII	GATC	3 cut(s)	16, 127, 270
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
Eco72I	CACGTG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	40, 49, 277
FaiI	YATR	5 cut(s)	24, 38, 47, 204, 275
FatI	CATG	3 cut(s)	36, 45, 273
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	241, 244
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	241, 244
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	241, 244
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	3 cut(s)	40, 49, 277
HinfI	GANTC	2 cut(s)	12, 55
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	6 cut(s)	6, 59, 131, 185, 274, 282
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 252
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	40, 49, 277
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	16, 127, 270
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	2 cut(s)	209, 247
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	88
MalI	GATC	3 cut(s)	18, 129, 272
MboI	GATC	3 cut(s)	16, 127, 270
MboII	GAAGA	2 cut(s)	146, 176
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	2 cut(s)	145, 167
MnlI	CCTC	3 cut(s)	30, 182, 245
MseI	TTAA	2 cut(s)	66, 144
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	240, 252
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	16, 127, 270
NlaIII	CATG	3 cut(s)	40, 49, 277
PagI	TCATGA	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	12, 55
PkrI	GCNGC	2 cut(s)	242, 245
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	236
PspCI	CACGTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	66, 144
SatI	GCNGC	2 cut(s)	241, 244
Sau3AI	GATC	3 cut(s)	16, 127, 270
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	3 cut(s)	33, 91, 236
SfaNI	GCATC	1 cut(s)	210
Sse9I	AATT	2 cut(s)	145, 167
SsiI	CCGC	3 cut(s)	199, 238, 241
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	4 cut(s)	15, 100, 132, 159
TasI	AATT	2 cut(s)	145, 167
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	12, 55
Tru1I	TTAA	2 cut(s)	66, 144
Tru9I	TTAA	2 cut(s)	66, 144
TseI	GCWGC	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	34
XapI	RAATTY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.