Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Forward (+)

42701582 .. 42701734

Gene Structure 153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1314500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGCAGTACGCAGAATTGGATGAAGAATTCCGCAATCGAGTTCAAGAAAATACTCGGCGTTATATTGGTGTATTTGCTGATGGCATCGATGAGCTCATGCCGGAGCCCACAGAGGCATTTACAGATGATGATCATGACATACTGATGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

51

Amino Acids

5.94

Weight (kDa)

4.05

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	26
BanII	GRGCYC	2 cut(s)	96, 108
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	87
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	96, 108
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	105
BssMI	GATC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	25
CciI	TCATGA	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	97, 134
CviJI	RGCY	2 cut(s)	94, 106
CviKI_1	RGCY	2 cut(s)	94, 106
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	96, 108
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	26
EcoT38I	GRGCYC	2 cut(s)	96, 108
FaeI	CATG	2 cut(s)	100, 137
FaiI	YATR	4 cut(s)	63, 98, 135, 140
FatI	CATG	2 cut(s)	96, 133
FbaI	TGATCA	1 cut(s)	130
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	2 cut(s)	96, 108
FspBI	CTAG	1 cut(s)	151
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	100, 137
HpaII	CCGG	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	44, 134
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	2 cut(s)	100, 137
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	1 cut(s)	114
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	151
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	96, 108
MluCI	AATT	2 cut(s)	14, 26
MnlI	CCTC	1 cut(s)	106
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	100, 137
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	34
PagI	TCATGA	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	130
SduI	GDGCHC	2 cut(s)	96, 108
SetI	ASST	2 cut(s)	96, 152
SfaNI	GCATC	1 cut(s)	93
SgeI	CNNG	6 cut(s)	50, 56, 66, 109, 113, 146
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	14, 26
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	151
SstI	GAGCTC	1 cut(s)	96
TaqI	TCGA	2 cut(s)	37, 87
TasI	AATT	2 cut(s)	14, 26
TspDTI	ATGAA	1 cut(s)	36
XapI	RAATTY	1 cut(s)	26
XspI	CTAG	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.