Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Reverse (-)

17036483 .. 17037156

Gene Structure 674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATCCAGGCTCATGGTGCTCAAACCCGATTCCGTCATCACCATCTACGATTGCCGAAGCTACACTAAGATTAGGTCCTTCCAAGTCCCCAATCTCACCGCCGCCGCCTTGTCCCCGCGTGGCACTTTTCTTCGGACTTTCCACAAGTCCTCAACGTCGCGTCTCCTCCGTCACCATGAAGGACCTCAACTTCGACGCCGACAAAGCGCTAGCGAAGGAATTCCTCTCCAACTTTGCAGATGCGGTTGGGGAACCCAAATACATGAACATCCTTCAAGAAGTTGCAAATCGCAAAATTCGGGCAATCCAGATTGATCTCGAAGACTTGTTTAATTACCGAGATTTCGACGAAGAATTCCTCGGACGGGTTACCGAAAACACCGGCGCCACCGAGGCTTTTACGGATGATGATCATGACATCTTGATGACACAAAGGTCGATGATGGACCCGAGAATATGGATGGTTCGATCCACATCGAAGATGCCTCCGAAAATCAAGCGCTACTTTGAAGTTTACTTAAGAGCATCTTCAAAGGGGCAGCCATTTACCATCGGGGAGGTGAAGGCTTCATTTATTGGTCGAGCTTGTGAGGATATCGGGTATTGTGACGCGGTGTTCGGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

209

Amino Acids

23.36

Weight (kDa)

5.33

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_N	PF14551	72 - 131	9.9e-07	MCM N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	386
AccII	CGCG	3 cut(s)	120, 162, 614
AciI	CCGC	6 cut(s)	101, 104, 107, 118, 245, 614
AclWI	GGATC	2 cut(s)	12, 465
AcsI	RAATTY	3 cut(s)	221, 297, 356
AcyI	GRCGYC	2 cut(s)	198, 387
AfeI	AGCGCT	2 cut(s)	210, 503
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	278, 512, 534
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	2 cut(s)	62, 587
AluI	AGCT	2 cut(s)	62, 587
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	12, 465
Ama87I	CYCGRG	1 cut(s)	451
Aor51HI	AGCGCT	2 cut(s)	210, 503
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	3 cut(s)	221, 297, 356
ArsI	GACNNNNNNTTYG	3 cut(s)	176, 208, 602
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	3 cut(s)	211, 389, 504
AspS9I	GGNCC	3 cut(s)	77, 184, 448
AsuHPI	GGTGA	4 cut(s)	33, 90, 166, 574
AsuNHI	GCTAGC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	3 cut(s)	77, 184, 448
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	4 cut(s)	52, 439, 457, 560
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	212
BfoI	RGCGCY	3 cut(s)	212, 390, 505
BfrI	CTTAAG	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	3 cut(s)	104, 107, 542
BlsI	GCNGC	3 cut(s)	105, 108, 543
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	3 cut(s)	77, 184, 448
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	3 cut(s)	77, 184, 448
BmiI	GGNNCC	4 cut(s)	6, 255, 388, 450
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	232, 474, 536
BmtI	GCTAGC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	330
BsaBI	GATNNNNATC	2 cut(s)	411, 475
BsaHI	GRCGYC	2 cut(s)	198, 387
BsaJI	CCNNGG	2 cut(s)	361, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	383
Bse8I	GATNNNNATC	2 cut(s)	411, 475
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	361, 393
BseGI	GGATG	4 cut(s)	270, 412, 468, 629
BseJI	GATNNNNATC	2 cut(s)	411, 475
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	3 cut(s)	120, 162, 614
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	73, 99
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	73, 99
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	4, 316, 412, 470
BspACI	CCGC	6 cut(s)	101, 104, 107, 118, 245, 614
BspFNI	CGCG	3 cut(s)	120, 162, 614
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	4 cut(s)	6, 255, 388, 450
BspOI	GCTAGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	12, 465
BspT107I	GGYRCC	1 cut(s)	386
BspTI	CTTAAG	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	361, 393
BssMI	GATC	4 cut(s)	4, 316, 412, 470
BssNI	GRCGYC	2 cut(s)	198, 387
Bst2UI	CCWGG	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	198, 387
BstAFI	CTTAAG	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	4 cut(s)	270, 412, 468, 629
BstFNI	CGCG	3 cut(s)	120, 162, 614
BstH2I	RGCGCY	3 cut(s)	212, 390, 505
BstHHI	GCGC	3 cut(s)	211, 389, 504
BstKTI	GATC	4 cut(s)	7, 319, 415, 473
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	4 cut(s)	4, 316, 412, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 206, 395
BstNI	CCWGG	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	7
BstUI	CGCG	3 cut(s)	120, 162, 614
BstV1I	GCAGC	1 cut(s)	553
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	4 cut(s)	270, 412, 468, 629
Cac8I	GCNNGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	3 cut(s)	211, 389, 504
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	77, 184, 448
CseI	GACGC	3 cut(s)	151, 206, 620
CviAII	CATG	4 cut(s)	15, 178, 265, 416
CviJI	RGCY	6 cut(s)	12, 62, 398, 544, 569, 587
CviKI_1	RGCY	6 cut(s)	12, 62, 398, 544, 569, 587
DdeI	CTNAG	1 cut(s)	68
DinI	GGCGCC	1 cut(s)	388
DpnI	GATC	4 cut(s)	6, 318, 414, 472
DpnII	GATC	4 cut(s)	4, 316, 412, 470
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	3 cut(s)	77, 184, 448
Eco47III	AGCGCT	2 cut(s)	210, 503
Eco88I	CYCGRG	1 cut(s)	451
Eco91I	GGTNACC	1 cut(s)	370
EcoO109I	RGGNCCY	2 cut(s)	77, 184
EcoO65I	GGTNACC	1 cut(s)	370
EcoRI	GAATTC	2 cut(s)	221, 356
EcoRII	CCWGG	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	598
EgeI	GGCGCC	1 cut(s)	388
EheI	GGCGCC	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	4 cut(s)	18, 181, 268, 419
FaiI	YATR	5 cut(s)	16, 179, 266, 417, 460
FalI	AAGNNNNNCTT	4 cut(s)	491, 523, 514, 546
FaqI	GGGAC	2 cut(s)	73, 99
FatI	CATG	4 cut(s)	14, 177, 264, 415
FauI	CCCGC	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	104, 107, 542
FokI	GGATG	3 cut(s)	257, 419, 475
Fsp4HI	GCNGC	3 cut(s)	104, 107, 542
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	3 cut(s)	210, 388, 503
GluI	GCNGC	3 cut(s)	104, 107, 542
HaeII	RGCGCY	3 cut(s)	212, 390, 505
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	3 cut(s)	151, 206, 620
HhaI	GCGC	3 cut(s)	211, 389, 504
Hin1I	GRCGYC	2 cut(s)	198, 387
Hin1II	CATG	4 cut(s)	18, 181, 268, 419
Hin6I	GCGC	3 cut(s)	209, 387, 502
HinP1I	GCGC	3 cut(s)	209, 387, 502
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	4 cut(s)	33, 90, 166, 574
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	4 cut(s)	137, 365, 492, 623
Hpy188III	TCNNGA	5 cut(s)	278, 310, 320, 416, 424
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	3 cut(s)	162, 200, 353
HpyAV	CCTTC	5 cut(s)	90, 175, 211, 284, 559
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	239, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 206, 395
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	2 cut(s)	198, 387
Hsp92II	CATG	4 cut(s)	18, 181, 268, 419
HspAI	GCGC	3 cut(s)	209, 387, 502
KasI	GGCGCC	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	4, 316, 412, 470
LpnPI	CCDG	3 cut(s)	21, 323, 397
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	3 cut(s)	232, 474, 536
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	172, 370, 608
MalI	GATC	4 cut(s)	6, 318, 414, 472
MboI	GATC	4 cut(s)	4, 316, 412, 470
MboII	GAAGA	5 cut(s)	124, 335, 365, 493, 522
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	221, 297, 334, 356
Mly113I	GGCGCC	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	162, 178, 197, 236, 371, 388, 498, 553, 586
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	3 cut(s)	333, 521, 628
MslI	CAYNNNNRTG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MvnI	CGCG	3 cut(s)	120, 162, 614
MwoI	GCNNNNNNNGC	3 cut(s)	18, 206, 395
NarI	GGCGCC	1 cut(s)	387
NdeII	GATC	4 cut(s)	4, 316, 412, 470
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	4 cut(s)	18, 181, 268, 419
NlaIV	GGNNCC	4 cut(s)	6, 255, 388, 450
NmuCI	GTSAC	2 cut(s)	172, 608
PagI	TCATGA	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	105, 108, 543
PluTI	GGCGCC	1 cut(s)	390
PpuMI	RGGWCCY	2 cut(s)	77, 184
Psp5II	RGGWCCY	2 cut(s)	77, 184
Psp6I	CCWGG	1 cut(s)	7
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	4 cut(s)	6, 255, 388, 450
PspPI	GGNCC	3 cut(s)	77, 184, 448
PspPPI	RGGWCCY	2 cut(s)	77, 184
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	333, 521, 628
SatI	GCNGC	3 cut(s)	104, 107, 542
Sau3AI	GATC	4 cut(s)	4, 316, 412, 470
Sau96I	GGNCC	3 cut(s)	77, 184, 448
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	7 cut(s)	64, 79, 160, 189, 440, 564, 589
SfaNI	GCATC	3 cut(s)	232, 474, 536
SfoI	GGCGCC	1 cut(s)	388
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	3 cut(s)	77, 184, 448
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	4 cut(s)	221, 297, 334, 356
SsiI	CCGC	6 cut(s)	101, 104, 107, 118, 245, 614
SspDI	GGCGCC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	7
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	7 cut(s)	195, 321, 348, 440, 469, 479, 583
TasI	AATT	4 cut(s)	221, 297, 334, 356
TauI	GCSGC	2 cut(s)	106, 109
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	3 cut(s)	333, 521, 628
Tru9I	TTAA	3 cut(s)	333, 521, 628
TseFI	GTSAC	2 cut(s)	172, 608
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	2 cut(s)	172, 608
TspDTI	ATGAA	3 cut(s)	194, 281, 561
TspGWI	ACGGA	3 cut(s)	24, 160, 419
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	3 cut(s)	77, 184, 448
XapI	RAATTY	3 cut(s)	221, 297, 356
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.