Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005152

Physical Location & Seq

Genomic Coordinates Forward (+)

33183113 .. 33184432

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATCCGTGCTCATGGTGCTCAAACCCGATTCCGTCATCACCATCTACGATTGCCGAAGCTACACTAAGATTAGGTCCTTCCAAGTCCCCAATCTCACCGCCGCCGCCTTGTCCCCGCGTGGCACTTTTCTTCGGACTTTCCACAAGTCCTCAACGCGCGTCTCCTCCGTCACCCATGAAGGACCTCAACTTCGACGCCGACAAAGCGCTAGCGAAGTGGAGCCGTGGGCGTGGCGGAGAAGCCGACCGAACCGGAGGAGATCTTGAAGCGAAGAAGGCTGCGGTGGACATGCGTACGGGGCGATCGTGGCTCGCGCGCCACCCGGCGAGACCCGGCCGAGATCGTCGAGCTTATCACCCAACCGGAGGCCCAAAACCCGACTCCGGCTCCGACCGAAGCCTTGCCTCTCCTAATGCGGAAATGGATTCGGCGTCCACATCATTGCGGTTTGTTTCCATTATTGTCCGGAGGAACTCTTCCTTTGGTGAAGGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.73

Weight (kDa)

10.2

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02060 AT4G02060
fragaria_vesca	FvH4_5g39230 FvH4_5g39230 FvH4_5g39230 FvH4_5g39230
malus_domestica	MD01G1012600.v1.1 MD03G1295400.v1.1 MD11G1312000.v1.1 MD11G1312600.v1.1 MD11G1314500.v1.1
prunus_persica	Prupe.8G272000_v2.0.a1
pyrus_communis	pycom01g04470
rosa_chinensis	RchiOBHm_Chr7g0241501
rosa_laevigata	RLG00000000575
rosa_multiflora	Rmu_co8153082.1_g000001 Rmu_sc0040921.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219090 Rroxscaffold_3G00241100 Rroxscaffold_3G00241110 Rroxscaffold_3G00241120 Rroxscaffold_5G00346280
rosa_rugosa	Rorug03G0267600 Rorug07G0344400 Rorug07G0344500
rosa_samantha	Rh7AG498900 Rh7BG469600 Rh7CG515900 Rh7DG483700
rosa_wichuraiana	Rw7G042140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	120, 159, 161, 317, 319
AccIII	TCCGGA	1 cut(s)	468
AciI	CCGC	8 cut(s)	101, 104, 107, 118, 237, 284, 419, 448
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	337
AcyI	GRCGYC	2 cut(s)	198, 434
AfaI	GTAC	1 cut(s)	298
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	368, 386
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	2 cut(s)	62, 353
AluI	AGCT	2 cut(s)	62, 353
Alw21I	GWGCWC	2 cut(s)	14, 23
Alw26I	GTCTC	2 cut(s)	168, 325
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	468
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	2 cut(s)	337, 370
ApeKI	GCWGC	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspLEI	GCGC	4 cut(s)	161, 211, 319, 321
AspS9I	GGNCC	3 cut(s)	77, 184, 371
AsuC2I	CCSGG	2 cut(s)	326, 336
AsuHPI	GGTGA	5 cut(s)	33, 90, 165, 350, 500
AsuNHI	GCTAGC	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	77, 184
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	14, 23
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	210
BcnI	CCSGG	2 cut(s)	326, 336
BcoDI	GTCTC	2 cut(s)	168, 325
BfaI	CTAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	212
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	3 cut(s)	104, 107, 282
BlsI	GCNGC	3 cut(s)	105, 108, 283
Bme1390I	CCNGG	2 cut(s)	326, 336
Bme18I	GGWCC	2 cut(s)	77, 184
BmgT120I	GGNCC	3 cut(s)	77, 184, 371
BmiI	GGNNCC	3 cut(s)	6, 224, 391
BmrFI	CCNGG	2 cut(s)	326, 336
BmtI	GCTAGC	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	326, 336
BsaHI	GRCGYC	2 cut(s)	198, 434
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	3 cut(s)	254, 365, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 386
Bse3DI	GCAATG	1 cut(s)	443
BseAI	TCCGGA	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	368, 386
BseMI	GCAATG	1 cut(s)	443
BsePI	GCGCGC	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	156, 273
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	5 cut(s)	120, 159, 161, 317, 319
Bsh1285I	CGRYCG	4 cut(s)	250, 308, 340, 397
BshFI	GGCC	2 cut(s)	339, 372
BsiEI	CGRYCG	4 cut(s)	250, 308, 340, 397
BsiHKAI	GWGCWC	2 cut(s)	14, 23
BsiSI	CCGG	6 cut(s)	255, 326, 336, 366, 387, 469
BsiWI	CGTACG	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	73, 99
BslI	CCNNNNNNNGG	2 cut(s)	368, 386
BsmAI	GTCTC	2 cut(s)	168, 325
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	73, 99
BsnI	GGCC	2 cut(s)	339, 372
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	14, 23
Bsp13I	TCCGGA	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	4, 262, 305, 343
BspACI	CCGC	8 cut(s)	101, 104, 107, 118, 237, 284, 419, 448
BspANI	GGCC	2 cut(s)	339, 372
BspEI	TCCGGA	1 cut(s)	468
BspFNI	CGCG	5 cut(s)	120, 159, 161, 317, 319
BspLI	GGNNCC	3 cut(s)	6, 224, 391
BspOI	GCTAGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	226
BssHII	GCGCGC	1 cut(s)	317
BssMI	GATC	4 cut(s)	4, 262, 305, 343
BssNI	GRCGYC	2 cut(s)	198, 434
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	2 cut(s)	198, 434
BstC8I	GCNNGC	3 cut(s)	213, 315, 319
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	226
BstFNI	CGCG	5 cut(s)	120, 159, 161, 317, 319
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	4 cut(s)	161, 211, 319, 321
BstKTI	GATC	4 cut(s)	7, 265, 308, 346
BstMAI	GTCTC	2 cut(s)	168, 325
BstMBI	GATC	4 cut(s)	4, 262, 305, 343
BstMCI	CGRYCG	4 cut(s)	250, 308, 340, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 206, 278, 301, 310
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	324, 334
BstUI	CGCG	5 cut(s)	120, 159, 161, 317, 319
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	4, 262
BstYI	RGATCY	2 cut(s)	4, 262
BstZI	CGGCCG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	339, 372
BtgI	CCRYGG	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	213, 315, 319
CfoI	GCGC	4 cut(s)	161, 211, 319, 321
Cfr13I	GGNCC	3 cut(s)	77, 184, 371
CseI	GACGC	3 cut(s)	150, 206, 423
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	3 cut(s)	15, 178, 292
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	4 cut(s)	6, 264, 307, 345
DpnII	GATC	4 cut(s)	4, 262, 305, 343
EaeI	YGGCCR	1 cut(s)	337
EagI	CGGCCG	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	252
EclXI	CGGCCG	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	77, 184
Eco47III	AGCGCT	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	337
EcoO109I	RGGNCCY	2 cut(s)	77, 184
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	18, 181, 295
FaiI	YATR	3 cut(s)	16, 179, 293
FaqI	GGGAC	2 cut(s)	73, 99
FatI	CATG	3 cut(s)	14, 177, 291
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	104, 107, 282
Fsp4HI	GCNGC	3 cut(s)	104, 107, 282
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	4 cut(s)	160, 210, 318, 320
GluI	GCNGC	3 cut(s)	104, 107, 282
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	339, 372
HapII	CCGG	6 cut(s)	255, 326, 336, 366, 387, 469
HgaI	GACGC	3 cut(s)	150, 206, 423
HhaI	GCGC	4 cut(s)	161, 211, 319, 321
Hin1I	GRCGYC	2 cut(s)	198, 434
Hin1II	CATG	3 cut(s)	18, 181, 295
Hin6I	GCGC	4 cut(s)	159, 209, 317, 319
HinP1I	GCGC	4 cut(s)	159, 209, 317, 319
HinfI	GANTC	3 cut(s)	31, 383, 428
HpaII	CCGG	6 cut(s)	255, 326, 336, 366, 387, 469
HphI	GGTGA	5 cut(s)	33, 90, 165, 350, 500
Hpy166II	GTNNAC	2 cut(s)	289, 438
Hpy188I	TCNGA	2 cut(s)	137, 394
Hpy188III	TCNNGA	2 cut(s)	266, 469
Hpy8I	GTNNAC	2 cut(s)	289, 438
Hpy99I	CGWCG	2 cut(s)	200, 351
HpyAV	CCTTC	4 cut(s)	90, 175, 271, 485
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 206, 278, 301, 310
HpyF3I	CTNAG	1 cut(s)	68
Hsp92I	GRCGYC	2 cut(s)	198, 434
Hsp92II	CATG	3 cut(s)	18, 181, 295
HspAI	GCGC	4 cut(s)	159, 209, 317, 319
Kpn2I	TCCGGA	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	4, 262, 305, 343
LmnI	GCTCC	2 cut(s)	222, 395
LpnPI	CCDG	6 cut(s)	268, 339, 349, 379, 400, 482
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	4 cut(s)	6, 264, 307, 345
MboI	GATC	4 cut(s)	4, 262, 305, 343
MboII	GAAGA	3 cut(s)	124, 286, 471
MflI	RGATCY	2 cut(s)	4, 262
MhlI	GDGCHC	2 cut(s)	14, 23
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	7 cut(s)	162, 177, 197, 251, 362, 418, 465
MroI	TCCGGA	1 cut(s)	468
MspI	CCGG	6 cut(s)	255, 326, 336, 366, 387, 469
MspR9I	CCNGG	2 cut(s)	326, 336
MvnI	CGCG	5 cut(s)	120, 159, 161, 317, 319
MwoI	GCNNNNNNNGC	5 cut(s)	18, 206, 278, 301, 310
NciI	CCSGG	2 cut(s)	326, 336
NdeII	GATC	4 cut(s)	4, 262, 305, 343
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	18, 181, 295
NlaIV	GGNNCC	3 cut(s)	6, 224, 391
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	295
PauI	GCGCGC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	31, 428
Pfl23II	CGTACG	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	105, 108, 283
Ple19I	CGATCG	1 cut(s)	308
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PpuMI	RGGWCCY	2 cut(s)	77, 184
Psp5II	RGGWCCY	2 cut(s)	77, 184
PspLI	CGTACG	1 cut(s)	296
PspN4I	GGNNCC	3 cut(s)	6, 224, 391
PspPI	GGNCC	3 cut(s)	77, 184, 371
PspPPI	RGGWCCY	2 cut(s)	77, 184
PsuI	RGATCY	2 cut(s)	4, 262
PteI	GCGCGC	1 cut(s)	317
PvuI	CGATCG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SatI	GCNGC	3 cut(s)	104, 107, 282
Sau3AI	GATC	4 cut(s)	4, 262, 305, 343
Sau96I	GGNCC	3 cut(s)	77, 184, 371
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	326, 336
SduI	GDGCHC	2 cut(s)	14, 23
SetI	ASST	5 cut(s)	64, 79, 189, 355, 496
SinI	GGWCC	2 cut(s)	77, 184
SsiI	CCGC	8 cut(s)	101, 104, 107, 118, 237, 284, 419, 448
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	324, 334
TaqI	TCGA	2 cut(s)	195, 349
TaqII	GACCGA	2 cut(s)	264, 411
TauI	GCSGC	2 cut(s)	106, 109
TfiI	GAWTC	2 cut(s)	31, 428
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	2 cut(s)	24, 159
VpaK11BI	GGWCC	2 cut(s)	77, 184
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.