Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012658

Physical Location & Seq

Genomic Coordinates Forward (+)

1267643 .. 1269189

Gene Structure 1547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1012400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCTGCAGAAGCCTTTCTTTAGACTGCTGCTGGTACTCTTATTGGTTTTCTCTCATGTTCTATTTTTGTCTGCAGTTCCTGCAACCAGGAGCCTCAAGTTAGAGGATGAAGACTTATCGGTCCAAAAATCTCTGGGTCTAGTGGATTTGGAGAGTGGAGAGGAGGTGTTTGATGTGGGTGGGGGAGAGGGGTTTATTGAAGGAAGGGTGACTATAGAAAGTGAAGACTATCCAGGAACAGGGGCAAACAACCATCATGACCCAAGAACCCCTGTTAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.29

Weight (kDa)

4.73

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012658)

Species	Orthologous Gene IDs
malus_domestica	MD12G1012300.v1.1 MD12G1012400.v1.1 MD14G1010100.v1.1 MD14G1010200.v1.1
prunus_persica	Prupe.7G016200_v2.0.a1 Prupe.7G016300_v2.0.a1
pyrus_communis	pycom12g00970 pycom12g00980 pycom14g00850 pycom14g00860
rosa_chinensis	RchiOBHm_Chr3g0495961
rosa_laevigata	RLG00000022576
rosa_roxburghii	Rroxscaffold_6G00389740
rosa_rugosa	Rorug03G0278000
rosa_samantha	Rh3AG325300 Rh3BG361800 Rh3CG357800 Rh3DG361100
rosa_wichuraiana	Rw3G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	86, 232
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	4, 28
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	121
BbsI	GAAGAC	2 cut(s)	117, 231
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	88, 234
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	3 cut(s)	5, 72, 213
BisI	GCNGC	2 cut(s)	5, 29
BlsI	GCNGC	2 cut(s)	6, 30
Bme1390I	CCNGG	2 cut(s)	88, 234
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	88, 234
BpiI	GAAGAC	2 cut(s)	117, 231
BpuEI	CTTGAG	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	88, 234
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	92
BspMAI	CTGCAG	2 cut(s)	9, 76
Bst2UI	CCWGG	2 cut(s)	88, 234
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 80
BstNI	CCWGG	2 cut(s)	88, 234
BstSCI	CCNGG	2 cut(s)	86, 232
BstSFI	CTRYAG	3 cut(s)	5, 72, 213
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	2 cut(s)	117, 231
BtsCI	GGATG	1 cut(s)	112
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	2 cut(s)	56, 257
CviJI	RGCY	3 cut(s)	13, 93, 281
CviKI_1	RGCY	3 cut(s)	13, 93, 281
CviQI	GTAC	1 cut(s)	35
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	86, 232
FaeI	CATG	2 cut(s)	59, 260
FaiI	YATR	3 cut(s)	57, 215, 258
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	2 cut(s)	55, 256
Fnu4HI	GCNGC	2 cut(s)	5, 29
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	5, 29
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	5, 29
Hin1II	CATG	2 cut(s)	59, 260
HindIII	AAGCTT	1 cut(s)	279
HphI	GGTGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	194, 198
HpyCH4V	TGCA	3 cut(s)	7, 74, 83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 80
Hsp92II	CATG	2 cut(s)	59, 260
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	8 cut(s)	17, 73, 93, 100, 119, 219, 225, 246
Lsp1109I	GCAGC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	122, 236
MnlI	CCTC	5 cut(s)	97, 104, 154, 157, 181
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	276, 283
MspR9I	CCNGG	2 cut(s)	88, 234
MvaI	CCWGG	2 cut(s)	88, 234
MwoI	GCNNNNNNNGC	2 cut(s)	10, 80
NlaIII	CATG	2 cut(s)	59, 260
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	6, 30
Psp6I	CCWGG	2 cut(s)	86, 232
PspGI	CCWGG	2 cut(s)	86, 232
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	2 cut(s)	9, 76
PstNI	CAGNNNCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	276, 283
SatI	GCNGC	2 cut(s)	5, 29
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	88, 234
SetI	ASST	2 cut(s)	168, 283
SfcI	CTRYAG	3 cut(s)	5, 72, 213
SinI	GGWCC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	86, 232
TaqII	GACCGA	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	276, 283
Tru9I	TTAA	2 cut(s)	276, 283
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	4, 28
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.