Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012658

Physical Location & Seq

Genomic Coordinates Reverse (-)

2326724 .. 2327464

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTGCCCTACAAGTCTTCCATGATTAAACTAGTTCTTTTTTTGAGCTTAACACATGTCCTCTTCTCCTCATCTGCTGCTGCAGCTTCTACCACTAGAAGCCTGAAGATAAATAAAGAAGCTCTACTGGGTCAGAGTTTGGTGGAGGAAGGTGTTGTTGGTTTGGGAGAAGGGTTTATTGAGGGACGGATGGATTTGGAAACCGCAGACTATTCAGGGGTGGGAGCAAATCCAGAGCACGATCCAAAACCCCCAGGAAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.33

Weight (kDa)

5.57

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012658)

Species	Orthologous Gene IDs
malus_domestica	MD12G1012300.v1.1 MD12G1012400.v1.1 MD14G1010100.v1.1 MD14G1010200.v1.1
prunus_persica	Prupe.7G016200_v2.0.a1 Prupe.7G016300_v2.0.a1
pyrus_communis	pycom12g00970 pycom12g00980 pycom14g00850 pycom14g00860
rosa_chinensis	RchiOBHm_Chr3g0495961
rosa_laevigata	RLG00000022576
rosa_roxburghii	Rroxscaffold_6G00389740
rosa_rugosa	Rorug03G0278000
rosa_samantha	Rh3AG325300 Rh3BG361800 Rh3CG357800 Rh3DG361100
rosa_wichuraiana	Rw3G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	55
AhlI	ACTAGT	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	3 cut(s)	48, 86, 122
AluI	AGCT	3 cut(s)	48, 86, 122
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	236
ApeKI	GCWGC	4 cut(s)	4, 77, 80, 83
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	64, 67, 95
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	255
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	2 cut(s)	32, 96
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	4 cut(s)	5, 78, 81, 84
BlsI	GCNGC	4 cut(s)	6, 79, 82, 85
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	64, 67, 95
BsiHKAI	GWGCWC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	2 cut(s)	68, 253
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	64, 67, 95
BstV2I	GAAGAC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	195
CviAII	CATG	2 cut(s)	22, 56
CviJI	RGCY	4 cut(s)	48, 86, 102, 122
CviKI_1	RGCY	4 cut(s)	48, 86, 102, 122
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	68, 253
EarI	CTCTTC	2 cut(s)	68, 253
Eco57I	CTGAAG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	25, 59
FaiI	YATR	2 cut(s)	23, 57
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	21, 55
Fnu4HI	GCNGC	4 cut(s)	5, 78, 81, 84
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	5, 78, 81, 84
FspBI	CTAG	2 cut(s)	32, 96
GluI	GCNGC	4 cut(s)	5, 78, 81, 84
Hin1II	CATG	2 cut(s)	25, 59
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	143, 164
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	25, 59
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	5 cut(s)	113, 116, 201, 240, 246
Lsp1109I	GCAGC	3 cut(s)	64, 67, 95
MaeI	CTAG	2 cut(s)	32, 96
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	3 cut(s)	9, 55, 118
MhlI	GDGCHC	1 cut(s)	240
MnlI	CCTC	4 cut(s)	71, 79, 139, 175
MseI	TTAA	2 cut(s)	27, 50
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	25, 59
NspI	RCATGY	1 cut(s)	59
PciI	ACATGT	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	6, 79, 82, 85
PscI	ACATGT	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	27, 50
SatI	GCNGC	4 cut(s)	5, 78, 81, 84
Sau3AI	GATC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	4 cut(s)	50, 88, 124, 154
SfcI	CTRYAG	1 cut(s)	81
SpeI	ACTAGT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	32, 96
StyD4I	CCNGG	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	27, 50
Tru9I	TTAA	2 cut(s)	27, 50
TseI	GCWGC	4 cut(s)	4, 77, 80, 83
TspGWI	ACGGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	2 cut(s)	32, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.