Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0016411

Physical Location & Seq

Genomic Coordinates Reverse (-)

10390965 .. 10391341

Gene Structure 377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1084900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGATTGAAGAAGGCCATTAACTCATCGTTGGAGGATGTAATAGAGAAAGCAGGGGGCTGTGCTGTGGTGGACAGAGGTTGCGCCACCCAATTGGAGAGGCACGGCGCTGCCATCAACAACCCTCTCTGGAGCACCGTCTGCCTCATCAAACAACCCAACCTCATCAAACGGGTTCACTTAAACTACTTGGAAGCCGGTGCTGATATTCTCATCACTTCTTCTTACCAGGTTGATTTCTTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008757 GO:0008898 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

83

Amino Acids

8.92

Weight (kDa)

6.7

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-methyl_trans	PF02574	23 - 79	6.9e-14	Homocysteine S-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016411)

Species	Orthologous Gene IDs
malus_domestica	MD12G1084900.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350231
rosa_laevigata	RLG00000010133 RLG00000034428
rosa_multiflora	Rmu_sc0000013.1_g000008 Rmu_sc0015829.1_g000001
rosa_samantha	Rh4AG011900 Rh4AG015300 Rh4BG010300 Rh4CG014800 Rh4CG016400 Rh4CG016500 Rh6AG322400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	228
Alw21I	GWGCWC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	86, 110
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	198
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	86, 110
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	43
CfoI	GCGC	2 cut(s)	86, 110
Cfr10I	RCCGGY	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	228
CviJI	RGCY	3 cut(s)	17, 60, 197
CviKI_1	RGCY	3 cut(s)	17, 60, 197
EcoRII	CCWGG	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	2 cut(s)	85, 109
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	2 cut(s)	86, 110
Hin6I	GCGC	2 cut(s)	84, 108
HinP1I	GCGC	2 cut(s)	84, 108
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	2 cut(s)	73, 178
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	73, 178
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HspAI	GCGC	2 cut(s)	84, 108
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	39, 115, 211, 215, 242
Lsp1109I	GCAGC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	228
MboII	GAAGA	2 cut(s)	22, 213
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	6 cut(s)	28, 71, 93, 135, 155, 173
MseI	TTAA	2 cut(s)	21, 182
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	21, 182
SatI	GCNGC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	3 cut(s)	82, 165, 234
SexAI	ACCWGGT	1 cut(s)	228
SgeI	CNNG	8 cut(s)	66, 116, 142, 185, 202, 210, 241, 242
Sse9I	AATT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	21, 182
Tru9I	TTAA	2 cut(s)	21, 182
TseI	GCWGC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.