Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

1306269 .. 1310016

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G018900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGCTTAGGAGGCCAGGAAACGTCGTCGTTTGTGAGTGATTTTCTGGAAAAGTGTGGTGGCTATGCTGTTCTTGACGGTGGGTTTGCCACTGAGCTTGAACGACATGGAGCTGACCTCAACGACCCTCTCTGGAGCGCCAAATGCCTTATCAGTTCTCCTCACCTTGTCAGAAGGGTACACTTGGACTACCTTGATGCTGGCGCAAACGTCATAATAACCGCGTCTTATCAGGCCACCATTCAGGGTTTTGAGGCCAAAGGTTTCTCTAAAGAAGAAGCCAAAGCCTTGATTAGGAAAAGTGTAGAAATTGCAATTGAGGCAAGGGAAATTTATTATGACAAATTGCAATCAAGACGTCCAGTTCTAGTTGCAGCATCTGTGGGCAGCTATGGGGCATACTTGGCTGATGGCTCTGAGTATAGTGGAAACTACGGTGATGCAGTTACCGTAGAGACGTTGAAGGATTTCCACAGGGAAAGGGTACAGATTCTGGCCAACTCCGGTGCTGATCTTATCGCATTTGAGACAACGCCGAATAAGATAGAAGCAAAGGCATATGCTGAGTTGCTTGAGGAAGAAGGAATAGACATTCCAGCCTGGTTTTCCTTCACTTCTAAGGATGGAATCAATGTGGTCAGTGGCGATTCGATCTCAGAGTGCACCTCTATTGCAGATTCATGCAAGCAAGTTGTTGCTGTTGGAATCAACTGCACACCTCCTAGATTCATCCATGGACTGGTTTCATTGATTCGGAAGGTTACAAGCAAACCAATAGTCATATACCCCAACAGTGGTGAGACTTATGATGGTCTGACCAAGCAATGGGTGCAATCAAGCGGGGAGGTCGATGAAGAGTTTGCAGACATAGTGATAGGCAAGTGGCATGAGGCCGGGGCTTCTCTATTCGGAGGCTGCTGCAGGACAACTCCAAATACCATAAGGGCCATATCTAGAGTTCTCTCCAACCAGAAGTCTTCTGCAATTAACGAGGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

334

Amino Acids

35.99

Weight (kDa)

4.94

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	361
AccB7I	CCANNNNNTGG	2 cut(s)	739, 825
AccII	CGCG	1 cut(s)	224
AciI	CCGC	2 cut(s)	222, 840
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	2 cut(s)	180, 486
AfiI	CCNNNNNNNGG	4 cut(s)	294, 739, 794, 825
AgsI	TTSAA	2 cut(s)	101, 463
AjnI	CCWGG	2 cut(s)	15, 599
AluBI	AGCT	3 cut(s)	97, 113, 390
AluI	AGCT	3 cut(s)	97, 113, 390
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	3 cut(s)	449, 521, 794
Alw44I	GTGCAC	1 cut(s)	661
AlwNI	CAGNNNCTG	2 cut(s)	380, 493
AoxI	GGCC	6 cut(s)	13, 234, 255, 495, 891, 945
ApaLI	GTGCAC	1 cut(s)	661
ApeKI	GCWGC	4 cut(s)	374, 387, 915, 918
ApoI	RAATTY	1 cut(s)	330
ArsI	GACNNNNNNTTYG	4 cut(s)	68, 100, 762, 794
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	140, 206
AspS9I	GGNCC	1 cut(s)	945
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	3 cut(s)	155, 449, 809
BaeGI	GKGCMC	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	969
Bbv12I	GWGCWC	1 cut(s)	665
BbvI	GCAGC	4 cut(s)	386, 399, 902, 905
BccI	CCATC	3 cut(s)	404, 617, 803
BciT130I	CCWGG	2 cut(s)	17, 601
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	3 cut(s)	449, 521, 794
BfaI	CTAG	3 cut(s)	368, 723, 954
BfmI	CTRYAG	1 cut(s)	919
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	4 cut(s)	375, 388, 916, 919
BlsI	GCNGC	4 cut(s)	376, 389, 917, 920
Bme1390I	CCNGG	3 cut(s)	17, 601, 895
BmgT120I	GGNCC	1 cut(s)	945
BmrFI	CCNGG	3 cut(s)	17, 601, 895
BmsI	GCATC	4 cut(s)	187, 386, 430, 985
BpiI	GAAGAC	1 cut(s)	969
BplI	GAGNNNNNCTC	4 cut(s)	102, 134, 650, 682
BpmI	CTGGAG	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	895
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	733, 894
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 739, 794, 825
Bse1I	ACTGG	2 cut(s)	362, 744
Bse3DI	GCAATG	1 cut(s)	830
BseBI	CCWGG	2 cut(s)	17, 601
BseDI	CCNNGG	2 cut(s)	733, 894
BseGI	GGATG	3 cut(s)	628, 729, 1000
BseLI	CCNNNNNNNGG	4 cut(s)	294, 739, 794, 825
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	4 cut(s)	84, 408, 555, 669
BseNI	ACTGG	2 cut(s)	362, 744
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	665
BseXI	GCAGC	4 cut(s)	386, 399, 902, 905
BsgI	GTGCAG	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	6 cut(s)	15, 236, 257, 497, 893, 947
BsiHKAI	GWGCWC	1 cut(s)	665
BsiSI	CCGG	2 cut(s)	504, 894
BslI	CCNNNNNNNGG	4 cut(s)	294, 739, 794, 825
BsmAI	GTCTC	3 cut(s)	449, 521, 794
BsmBI	CGTCTC	1 cut(s)	449
BsnI	GGCC	6 cut(s)	15, 236, 257, 497, 893, 947
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	511, 651
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	2 cut(s)	222, 840
BspANI	GGCC	6 cut(s)	15, 236, 257, 497, 893, 947
BspCNI	CTCAG	4 cut(s)	85, 409, 556, 668
BspFNI	CGCG	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	923
BsrDI	GCAATG	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	362, 744
BssECI	CCNNGG	2 cut(s)	733, 894
BssMI	GATC	2 cut(s)	511, 651
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	2 cut(s)	17, 601
Bst4CI	ACNGT	4 cut(s)	80, 437, 451, 794
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstC8I	GCNNGC	2 cut(s)	202, 686
BstDEI	CTNAG	6 cut(s)	7, 93, 417, 564, 618, 655
BstDSI	CCRYGG	1 cut(s)	733
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	628, 729, 1000
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	140, 206
BstKTI	GATC	2 cut(s)	514, 654
BstMAI	GTCTC	3 cut(s)	449, 521, 794
BstMBI	GATC	2 cut(s)	511, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 144, 320, 404, 829
BstNI	CCWGG	2 cut(s)	17, 601
BstSCI	CCNGG	3 cut(s)	15, 599, 893
BstSFI	CTRYAG	1 cut(s)	919
BstSLI	GKGCMC	1 cut(s)	665
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	4 cut(s)	386, 399, 902, 905
BstV2I	GAAGAC	1 cut(s)	969
BsuRI	GGCC	6 cut(s)	15, 236, 257, 497, 893, 947
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	3 cut(s)	628, 729, 1000
BtsIMutI	CAGTG	3 cut(s)	90, 646, 799
Cac8I	GCNNGC	2 cut(s)	202, 686
CaiI	CAGNNNCTG	2 cut(s)	380, 493
CfoI	GCGC	2 cut(s)	140, 206
Cfr13I	GGNCC	1 cut(s)	945
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	179, 485
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	4 cut(s)	107, 681, 734, 887
CviQI	GTAC	2 cut(s)	179, 485
DdeI	CTNAG	6 cut(s)	7, 93, 417, 564, 618, 655
DpnI	GATC	2 cut(s)	513, 653
DpnII	GATC	2 cut(s)	511, 651
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	733
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	15, 599
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	4 cut(s)	110, 684, 737, 890
FatI	CATG	4 cut(s)	106, 680, 733, 886
FauI	CCCGC	1 cut(s)	833
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	375, 388, 916, 919
FokI	GGATG	2 cut(s)	635, 716
Fsp4HI	GCNGC	4 cut(s)	375, 388, 916, 919
FspBI	CTAG	3 cut(s)	368, 723, 954
GlaI	GCGC	2 cut(s)	139, 205
GluI	GCNGC	4 cut(s)	375, 388, 916, 919
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	6 cut(s)	15, 236, 257, 497, 893, 947
HapII	CCGG	2 cut(s)	504, 894
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	2 cut(s)	140, 206
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	4 cut(s)	110, 684, 737, 890
Hin6I	GCGC	2 cut(s)	138, 204
HinP1I	GCGC	2 cut(s)	138, 204
HinfI	GANTC	7 cut(s)	490, 627, 647, 677, 705, 726, 751
HpaII	CCGG	2 cut(s)	504, 894
HphI	GGTGA	3 cut(s)	155, 449, 809
Hpy166II	GTNNAC	2 cut(s)	181, 663
Hpy188I	TCNGA	6 cut(s)	173, 418, 658, 756, 816, 911
Hpy188III	TCNNGA	5 cut(s)	47, 74, 133, 354, 954
Hpy8I	GTNNAC	2 cut(s)	181, 663
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	5 cut(s)	168, 457, 575, 619, 751
HpyCH4III	ACNGT	4 cut(s)	80, 437, 451, 794
HpyCH4IV	ACGT	4 cut(s)	23, 210, 358, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 144, 320, 404, 829
HpyF3I	CTNAG	6 cut(s)	7, 93, 417, 564, 618, 655
HpySE526I	ACGT	4 cut(s)	23, 210, 358, 458
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	4 cut(s)	110, 684, 737, 890
HspAI	GCGC	2 cut(s)	138, 204
Kzo9I	GATC	2 cut(s)	511, 651
LmnI	GCTCC	2 cut(s)	110, 135
Lsp1109I	GCAGC	4 cut(s)	386, 399, 902, 905
LweI	GCATC	4 cut(s)	187, 386, 430, 985
MaeI	CTAG	3 cut(s)	368, 723, 954
MaeII	ACGT	4 cut(s)	23, 210, 358, 458
MaeIII	GTNAC	2 cut(s)	445, 760
MalI	GATC	2 cut(s)	513, 653
MboI	GATC	2 cut(s)	511, 651
MboII	GAAGA	4 cut(s)	287, 590, 866, 969
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	665
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	5 cut(s)	309, 315, 330, 344, 984
MluNI	TGGCCA	1 cut(s)	497
MmeI	TCCRAC	2 cut(s)	682, 990
Mox20I	TGGCCA	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	2 cut(s)	987, 1000
Msp20I	TGGCCA	1 cut(s)	497
MspI	CCGG	2 cut(s)	504, 894
MspR9I	CCNGG	3 cut(s)	17, 601, 895
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	17, 601
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	12, 144, 320, 404, 829
NciI	CCSGG	1 cut(s)	895
NcoI	CCATGG	1 cut(s)	733
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	2 cut(s)	511, 651
NlaIII	CATG	4 cut(s)	110, 684, 737, 890
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	7 cut(s)	490, 627, 647, 677, 705, 726, 751
PflMI	CCANNNNNTGG	2 cut(s)	739, 825
PkrI	GCNGC	4 cut(s)	376, 389, 917, 920
Psp6I	CCWGG	2 cut(s)	15, 599
PspGI	CCWGG	2 cut(s)	15, 599
PspPI	GGNCC	1 cut(s)	945
PstI	CTGCAG	1 cut(s)	923
PstNI	CAGNNNCTG	2 cut(s)	380, 493
RsaI	GTAC	2 cut(s)	180, 486
RsaNI	GTAC	2 cut(s)	179, 485
SaqAI	TTAA	2 cut(s)	987, 1000
SatI	GCNGC	4 cut(s)	375, 388, 916, 919
Sau3AI	GATC	2 cut(s)	511, 651
Sau96I	GGNCC	1 cut(s)	945
ScrFI	CCNGG	3 cut(s)	17, 601, 895
SduI	GDGCHC	1 cut(s)	665
SfaNI	GCATC	4 cut(s)	187, 386, 430, 985
SfcI	CTRYAG	1 cut(s)	919
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	5 cut(s)	309, 315, 330, 344, 984
SsiI	CCGC	2 cut(s)	222, 840
SspMI	CTAG	3 cut(s)	368, 723, 954
StyD4I	CCNGG	3 cut(s)	15, 599, 893
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	4 cut(s)	80, 437, 451, 794
TaiI	ACGT	4 cut(s)	26, 213, 361, 461
TaqI	TCGA	2 cut(s)	650, 849
TasI	AATT	5 cut(s)	309, 315, 330, 344, 984
TfiI	GAWTC	7 cut(s)	490, 627, 647, 677, 705, 726, 751
Tru1I	TTAA	2 cut(s)	987, 1000
Tru9I	TTAA	2 cut(s)	987, 1000
TscAI	CASTG	3 cut(s)	97, 646, 799
TseI	GCWGC	4 cut(s)	374, 387, 915, 918
TspDTI	ATGAA	4 cut(s)	669, 718, 735, 867
TspRI	CASTG	3 cut(s)	97, 646, 799
Van91I	CCANNNNNTGG	2 cut(s)	739, 825
VneI	GTGCAC	1 cut(s)	661
XagI	CCTNNNNNAGG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	330
XbaI	TCTAGA	1 cut(s)	953
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	3 cut(s)	368, 723, 954
ZraI	GACGTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.